From 37de9db94c979d38a123312c66ecbee9be9a5243 Mon Sep 17 00:00:00 2001
From: Andreas Schmitz <schmitz@terrestris.de>
Date: Thu, 10 Oct 2024 12:54:35 +0200
Subject: [PATCH] fix: fix linting errors

---
 poetry.lock                                   | 1293 ++++++++++-------
 pyproject.toml                                |    2 +
 src/ump/__init__.py                           |    3 +-
 src/ump/api/db_handler.py                     |  114 +-
 src/ump/api/ensemble.py                       |    6 +-
 src/ump/api/job.py                            |   51 +-
 src/ump/api/job_comments.py                   |    4 +-
 src/ump/api/job_status.py                     |   17 +-
 src/ump/api/jobs.py                           |  214 ++-
 .../api/{keycloak.py => keycloak_utils.py}    |    3 +
 src/ump/api/process.py                        |   78 +-
 src/ump/api/processes.py                      |   20 +-
 src/ump/api/providers.py                      |   28 +-
 src/ump/api/routes/ensembles.py               |   70 +-
 src/ump/api/routes/jobs.py                    |   25 +-
 src/ump/api/routes/users.py                   |    5 +-
 src/ump/config.py                             |    4 +-
 src/ump/errors.py                             |   11 +-
 src/ump/geoserver/geoserver.py                |   41 +-
 19 files changed, 1147 insertions(+), 842 deletions(-)
 rename src/ump/api/{keycloak.py => keycloak_utils.py} (87%)

diff --git a/poetry.lock b/poetry.lock
index cf32dd2..299078b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -20,113 +20,113 @@ tests = ["hypothesis", "pytest"]
 
 [[package]]
 name = "aiohappyeyeballs"
-version = "2.4.0"
+version = "2.4.3"
 description = "Happy Eyeballs for asyncio"
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "aiohappyeyeballs-2.4.0.tar.gz", hash = "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2"},
+    {file = "aiohappyeyeballs-2.4.3-py3-none-any.whl", hash = "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572"},
+    {file = "aiohappyeyeballs-2.4.3.tar.gz", hash = "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586"},
 ]
 
 [[package]]
 name = "aiohttp"
-version = "3.10.6"
+version = "3.10.9"
 description = "Async http client/server framework (asyncio)"
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -262,13 +262,13 @@ files = [
 
 [[package]]
 name = "astroid"
-version = "3.3.4"
+version = "3.3.5"
 description = "An abstract syntax tree for Python with inference support."
 optional = false
 python-versions = ">=3.9.0"
 files = [
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 [[package]]
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 [[package]]
 name = "black"
-version = "24.8.0"
+version = "24.10.0"
 description = "The uncompromising code formatter."
 optional = false
-python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -408,7 +408,7 @@ platformdirs = ">=2"
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.7.4)", "aiohttp (>=3.7.4,!=3.9.0)"]
+d = ["aiohttp (>=3.10)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
@@ -526,101 +526,116 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.3.2"
+version = "3.4.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 [[package]]
@@ -766,83 +781,73 @@ test-no-images = ["pytest", "pytest-cov", "pytest-rerunfailures", "pytest-xdist"
 
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 [package.extras]
@@ -985,13 +990,13 @@ profile = ["gprof2dot (>=2022.7.29)"]
 
 [[package]]
 name = "distlib"
-version = "0.3.8"
+version = "0.3.9"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
 files = [
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 [[package]]
@@ -1098,6 +1103,22 @@ docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.
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 typing = ["typing-extensions (>=4.12.2)"]
 
+[[package]]
+name = "flake8"
+version = "7.1.1"
+description = "the modular source code checker: pep8 pyflakes and co"
+optional = false
+python-versions = ">=3.8.1"
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+pycodestyle = ">=2.12.0,<2.13.0"
+pyflakes = ">=3.2.0,<3.3.0"
+
 [[package]]
 name = "flask"
 version = "3.0.3"
@@ -1518,13 +1539,13 @@ files = [
 
 [[package]]
 name = "httpcore"
-version = "1.0.5"
+version = "1.0.6"
 description = "A minimal low-level HTTP client."
 optional = false
 python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -1535,7 +1556,7 @@ h11 = ">=0.13,<0.15"
 asyncio = ["anyio (>=4.0,<5.0)"]
 http2 = ["h2 (>=3,<5)"]
 socks = ["socksio (==1.*)"]
-trio = ["trio (>=0.22.0,<0.26.0)"]
+trio = ["trio (>=0.22.0,<1.0)"]
 
 [[package]]
 name = "httpx"
@@ -1670,13 +1691,13 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio
 
 [[package]]
 name = "ipython"
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+version = "8.28.0"
 description = "IPython: Productive Interactive Computing"
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 python-versions = ">=3.10"
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 [package.dependencies]
@@ -1800,13 +1821,13 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2023.12.1"
+version = "2024.10.1"
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 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
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 ]
 
 [package.dependencies]
@@ -1814,13 +1835,13 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-book"
-version = "1.0.2"
+version = "1.0.3"
 description = "Build a book with Jupyter Notebooks and Sphinx."
 optional = false
 python-versions = ">=3.9"
 files = [
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 [package.dependencies]
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 sphinx-jupyterbook-latex = ">=1,<2"
 sphinx-multitoc-numbering = ">=0.1.3,<1"
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+sphinx-thebe = ">=0.3.1,<1"
 sphinx_togglebutton = "*"
 sphinxcontrib-bibtex = ">=2.5.0,<3"
 
@@ -1847,7 +1868,7 @@ sphinxcontrib-bibtex = ">=2.5.0,<3"
 code-style = ["pre-commit (>=3.1,<4.0)"]
 pdfhtml = ["pyppeteer"]
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+testing = ["altair", "beautifulsoup4", "beautifulsoup4", "cookiecutter", "coverage", "jupytext", "matplotlib", "numpy (>=2)", "pandas", "pydata-sphinx-theme (>=0.15.3)", "pyppeteer", "pytest (>=6.2.4)", "pytest-cov", "pytest-regressions", "pytest-timeout", "pytest-xdist", "sphinx_click", "sphinx_inline_tabs", "texsoup"]
 
 [[package]]
 name = "jupyter-cache"
@@ -2132,71 +2153,72 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
 [[package]]
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+version = "3.0.1"
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+python-versions = ">=3.9"
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 [[package]]
@@ -2295,6 +2317,17 @@ files = [
 [package.dependencies]
 traitlets = "*"
 
+[[package]]
+name = "mccabe"
+version = "0.7.0"
+description = "McCabe checker, plugin for flake8"
+optional = false
+python-versions = ">=3.6"
+files = [
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+]
+
 [[package]]
 name = "mdit-py-plugins"
 version = "0.4.2"
@@ -2753,8 +2786,8 @@ files = [
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.23.2", markers = "python_version == \"3.11\""},
     {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
+    {version = ">=1.23.2", markers = "python_version == \"3.11\""},
 ]
 python-dateutil = ">=2.8.2"
 pytz = ">=2020.1"
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 [package.dependencies]
 wcwidth = "*"
 
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 version = "6.0.0"
@@ -3199,6 +3339,17 @@ files = [
 docutils = ">=0.14"
 pybtex = ">=0.16"
 
+[[package]]
+name = "pycodestyle"
+version = "2.12.1"
+description = "Python style guide checker"
+optional = false
+python-versions = ">=3.8"
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 version = "2.22"
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 [package.extras]
 windows-terminal = ["colorama (>=0.4.6)"]
 
+[[package]]
+name = "pylint"
+version = "3.3.1"
+description = "python code static checker"
+optional = false
+python-versions = ">=3.9.0"
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+dill = [
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+platformdirs = ">=2.2.0"
+tomlkit = ">=0.10.1"
+
+[package.extras]
+spelling = ["pyenchant (>=3.2,<4.0)"]
+testutils = ["gitpython (>3)"]
+
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+version = "0.10.0"
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 ]
 
 [package.dependencies]
@@ -3305,7 +3488,7 @@ packaging = "*"
 
 [package.extras]
 benchmark = ["pytest-benchmark"]
-dev = ["Cython"]
+dev = ["cython"]
 geopandas = ["geopandas"]
 test = ["pytest", "pytest-cov"]
 
@@ -3325,38 +3508,36 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyproj"
-version = "3.6.1"
+version = "3.7.0"
 description = "Python interface to PROJ (cartographic projections and coordinate transformations library)"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
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 [package.dependencies]
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 [[package]]
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+version = "4.6.2"
 description = "python-keycloak is a Python package providing access to the Keycloak API."
 optional = false
 python-versions = "<4.0,>=3.8"
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 [[package]]
@@ -4219,8 +4404,8 @@ files = [
 
 [package.dependencies]
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-    {version = ">=2.7", markers = "python_version < \"3.12\""},
     {version = ">=3.0.0a1", markers = "python_version >= \"3.12\""},
+    {version = ">=2.7", markers = "python_version < \"3.12\""},
 ]
 Jinja2 = "*"
 PyYAML = "*"
@@ -4731,13 +4916,13 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "termcolor"
-version = "2.4.0"
+version = "2.5.0"
 description = "ANSI color formatting for output in terminal"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 [package.extras]
@@ -4765,6 +4950,17 @@ files = [
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 ]
 
+[[package]]
+name = "tomlkit"
+version = "0.13.2"
+description = "Style preserving TOML library"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
 [[package]]
 name = "tornado"
 version = "6.4.1"
@@ -4886,13 +5082,13 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.26.5"
+version = "20.26.6"
 description = "Virtual Python Environment builder"
 optional = false
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 [package.dependencies]
@@ -5011,108 +5207,109 @@ test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
 
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+    {file = "yarl-1.14.0.tar.gz", hash = "sha256:88c7d9d58aab0724b979ab5617330acb1c7030b79379c8138c1c8c94e121d1b3"},
 ]
 
 [package.dependencies]
 idna = ">=2.0"
 multidict = ">=4.0"
+propcache = ">=0.2.0"
 
 [[package]]
 name = "zipp"
@@ -5136,4 +5333,4 @@ type = ["pytest-mypy"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.11,<3.13"
-content-hash = "87bec906b1822179f1fe419bbb2dbeb73f9431cea28b39f6b830f8d10ae9018e"
+content-hash = "b860d3d39e527c4b731333c46248d357a9c4d7f3d62bd17da530d86d9004a58a"
diff --git a/pyproject.toml b/pyproject.toml
index 9cb00a8..5686e94 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -112,6 +112,8 @@ pytest-xdist = ">=2.2.0,<3"
 types-toml = ">=0.10.1,<1"
 pre-commit = ">=3.4.0,<4"
 debugpy = "^1.8.5"
+flake8 = "^7.1.1"
+pylint = "^3.3.1"
 
 [tool.poetry.group.docs]
 optional = true
diff --git a/src/ump/__init__.py b/src/ump/__init__.py
index 7a39788..fa3d76d 100644
--- a/src/ump/__init__.py
+++ b/src/ump/__init__.py
@@ -1,6 +1,7 @@
 """urban-model-platform package.
 
-server federation api, OGC Api Processes-based to connect model servers and centralize access to them
+server federation api, OGC Api Processes-based to connect model servers and
+centralize access to them
 """
 
 from __future__ import annotations
diff --git a/src/ump/api/db_handler.py b/src/ump/api/db_handler.py
index 2871968..7cd4c3c 100644
--- a/src/ump/api/db_handler.py
+++ b/src/ump/api/db_handler.py
@@ -1,69 +1,81 @@
-import ump.config as config
+import logging
+
 import psycopg2 as db
 from psycopg2.extras import RealDictCursor
 
-import logging
+from ump import config
 
 logger = logging.getLogger(__name__)
 
 class DBHandler():
-  def __init__(self):
-    self.connection = db.connect(
-      database = config.postgres_db,
-      host     = config.postgres_host,
-      user     = config.postgres_user,
-      password = config.postgres_password,
-      port     = config.postgres_port
-    )
-    self.sortable_columns = []
-
-  def set_sortable_columns(self, sortable_columns):
-    self.sortable_columns = sortable_columns
+    def __init__(self):
+        self.connection = db.connect(
+            database = config.postgres_db,
+            host     = config.postgres_host,
+            user     = config.postgres_user,
+            password = config.postgres_password,
+            port     = config.postgres_port
+        )
+        self.sortable_columns = []
 
-  def run_query(self, query, conditions=[], query_params={}, order=[], limit=None, page=None):
-    if conditions:
-      query += " WHERE " + " AND ".join(conditions)
+    def set_sortable_columns(self, sortable_columns):
+        self.sortable_columns = sortable_columns
 
-    if order and set(order).issubset(set(self.sortable_columns)):
-      query += f" ORDER BY {', '.join(order)} DESC"
-    elif order:
-      logging.debug(f" --> Could not order by {order} since sortable_columns hasn't been set! Please call set_sortable_columns!")
+    def run_query(
+            self,
+            query,
+            conditions=None,
+            query_params=None,
+            order=None,
+            limit=None,
+            page=None
+        ):
+        if query_params is None:
+            query_params = {}
+        if conditions:
+            query += " WHERE " + " AND ".join(conditions)
 
-    if limit:
-      offset = 0
-      if page:
-        offset = (page - 1) * limit
+        if order and set(order).issubset(set(self.sortable_columns)):
+            query += f" ORDER BY {', '.join(order)} DESC"
+        elif order:
+            logging.debug(
+                " --> Could not order by %s since sortable_columns hasn't been set!" +
+                " Please call set_sortable_columns!",
+                order
+              )
 
-      query += " LIMIT %(limit)s OFFSET %(offset)s"
-      query_params['limit'] = limit
-      query_params['offset'] = offset
+        if limit:
+            offset = 0
+            if page:
+                offset = (page - 1) * limit
 
-    #logging.debug(f" --> SQL query = {query}")
-    #logging.debug(f" --> query_params = {query_params}")
+            query += " LIMIT %(limit)s OFFSET %(offset)s"
+            query_params['limit'] = limit
+            query_params['offset'] = offset
 
-    with self.connection:
-      with self.connection.cursor(cursor_factory = RealDictCursor) as cursor:
-        cursor.execute(query, query_params)
-        try:
-          results = cursor.fetchall()
-        except db.ProgrammingError as e:
-          if str(e) == "no results to fetch":
-            return
-          else:
-            raise e
+        with self.connection:
+            with self.connection.cursor(cursor_factory = RealDictCursor) as cursor:
+                cursor.execute(query, query_params)
+                try:
+                    results = cursor.fetchall()
+                except db.ProgrammingError as e:
+                    if str(e) == "no results to fetch":
+                        return
+                    else:
+                        raise e
 
-    return results
+        return results
 
-  # needed so that this class can be used as a context manager
-  def __enter__(self):
-    return self
+    # needed so that this class can be used as a context manager
+    def __enter__(self):
+        return self
 
-  def __exit__(self, type, value, traceback):
-    if (self.connection):
-      self.connection.close()
+    def __exit__(self, exc_type, value, traceback):
+        if self.connection:
+            self.connection.close()
 
-    if type is None and value is None and traceback is None:
-      return True
+        if exc_type is None and value is None and traceback is None:
+            return True
 
-    logger.error(f"{type}: {value} - {traceback}")
-    return False
+        logger.error("%s: %s - %s", exc_type, value, traceback)
+        return False
diff --git a/src/ump/api/ensemble.py b/src/ump/api/ensemble.py
index f685f03..cd8dc50 100644
--- a/src/ump/api/ensemble.py
+++ b/src/ump/api/ensemble.py
@@ -1,13 +1,15 @@
+"""Ensemble and related entities."""
 from datetime import datetime, timezone
 from typing import ClassVar
 
 from sqlalchemy import BigInteger, DateTime, ForeignKey, String
-from sqlalchemy.orm import Mapped, mapped_column, declarative_base
+from sqlalchemy.orm import Mapped, declarative_base, mapped_column
 from sqlalchemy_serializer import SerializerMixin
 
 Base = declarative_base()
 
 class JobsEnsembles(Base, SerializerMixin):
+    """Entity linking jobs and ensembles."""
     __tablename__ = 'jobs_ensembles'
 
     id: Mapped[int] = mapped_column(primary_key=True)
@@ -29,6 +31,7 @@ class EnsemblesUsers(Base, SerializerMixin):
     user_id: Mapped[str] = mapped_column(String())
 
 class Ensemble(Base, SerializerMixin):
+    """Ensemble entity"""
     __tablename__ = "ensembles"
 
     id: Mapped[int] = mapped_column(primary_key=True)
@@ -66,6 +69,7 @@ def _to_dict(self):
         }
 
 class Comment(Base, SerializerMixin):
+    """Comments for ensembles"""
     __tablename__ = "ensemble_comments"
 
     id: Mapped[int] = mapped_column(primary_key=True)
diff --git a/src/ump/api/job.py b/src/ump/api/job.py
index 14e6fca..5233bc2 100644
--- a/src/ump/api/job.py
+++ b/src/ump/api/job.py
@@ -60,9 +60,15 @@ def __init__(self, job_id=None, user=None):
         self.name = None
         self.process_title = None
         self.process_version = None
+        self.remote_job_id = None
+        self.process_id_with_prefix = None
+        self.parameters = None
+        self.provider_prefix = None
+        self.process_id = None
+        self.provider_url = None
 
         if job_id and not self._init_from_db(job_id, user):
-            raise CustomException(f"Job could not be found!")
+            raise CustomException("Job could not be found!")
 
     def create(
         self,
@@ -71,7 +77,7 @@ def create(
         process_id_with_prefix=None,
         process_title=None,
         name=None,
-        parameters={},
+        parameters=None,
         user=None,
         process_version=None,
     ):
@@ -100,7 +106,7 @@ def create(
             logging.error(self._to_dict())
             db.run_query(query, query_params=self._to_dict())
 
-        logging.info(f" --> Job {self.job_id} for {self.process_id} created.")
+        logging.info(" --> Job %s for %s created.", self.job_id, self.process_id)
 
     def _set_attributes(
         self,
@@ -109,7 +115,7 @@ def _set_attributes(
         process_id_with_prefix=None,
         process_title=None,
         name=None,
-        parameters={},
+        parameters=None,
         user_id=None,
         process_version=None,
     ):
@@ -134,7 +140,8 @@ def _set_attributes(
             match = re.search(r"(.*):(.*)", self.process_id_with_prefix)
             if not match:
                 raise InvalidUsage(
-                    f"Process ID {self.process_id_with_prefix} is not known! Please check endpoint api/processes for a list of available processes."
+                    f"Process ID {self.process_id_with_prefix} is not known! " +
+                    "Please check endpoint api/processes for a list of available processes."
                 )
 
             self.provider_prefix = match.group(1)
@@ -146,7 +153,7 @@ def _set_attributes(
 
     def _init_from_db(self, job_id, user):
         query = """
-      SELECT * FROM jobs j left join jobs_users u on j.job_id = u.job_id WHERE j.job_id = %(job_id)s
+      SELECT j.* FROM jobs j left join jobs_users u on j.job_id = u.job_id WHERE j.job_id = %(job_id)s
     """
         if user is None:
             query += " and j.user_id is null"
@@ -157,10 +164,10 @@ def _init_from_db(self, job_id, user):
             job_details = db.run_query(query, query_params={"job_id": job_id})
 
         if len(job_details) > 0:
+            logging.error(job_details[0])
             self._init_from_dict(dict(job_details[0]))
             return True
-        else:
-            return False
+        return False
 
     def _init_from_dict(self, data):
         self.job_id = data["job_id"]
@@ -182,6 +189,10 @@ def _init_from_dict(self, data):
         self.process_title = data["process_title"]
         self.name = data["name"]
         self.process_version = data["process_version"]
+        logging.error('next')
+        logging.error(data)
+        logging.error(self._to_dict())
+        logging.error(self.display())
 
     def _to_dict(self):
         return {
@@ -232,14 +243,14 @@ def set_results_metadata(self, results_as_json):
         values = []
         for column in maximal_values_dict:
 
-            type = str(types[column])
-            if type == "float64" and results_df[column].apply(float.is_integer).all():
-                type = "int"
+            data_type = str(types[column])
+            if data_type == "float64" and results_df[column].apply(float.is_integer).all():
+                data_type = "int"
 
             values.append(
                 {
                     column: {
-                        "type": type,
+                        "type": data_type,
                         "min": minimal_values_dict[column],
                         "max": maximal_values_dict[column],
                     }
@@ -257,7 +268,7 @@ def set_results_metadata(self, results_as_json):
                     }
                 )
             except Exception as e:
-                logging.error(f"Unable to store column {column}, skipping: {e}")
+                logging.error("Unable to store column %s, skipping: %s", column, e)
 
         self.results_metadata = {"values": values}
 
@@ -290,7 +301,8 @@ def display(self):
                     "rel": "service",
                     "type": "application/json",
                     "hreflang": "en",
-                    "title": f"Results of job {self.job_id} as geojson - available when job is finished.",
+                    "title": f"Results of job {self.job_id} as geojson" +
+                        " - available when job is finished.",
                 }
             ]
 
@@ -322,7 +334,8 @@ async def results(self):
                 return await response.json()
             else:
                 raise CustomException(
-                    f"Could not retrieve results from model server {self.provider_url} - {response.status}: {response.reason}"
+                    "Could not retrieve results from model server " +
+                    f"{self.provider_url} - {response.status}: {response.reason}"
                 )
 
     async def results_to_geoserver(self):
@@ -338,12 +351,16 @@ async def results_to_geoserver(self):
             geoserver.save_results(job_id=self.job_id, data=results)
 
             logging.info(
-                f" --> Successfully stored results for job {self.process_id_with_prefix} (={self.process_id})/{self.job_id} to geoserver."
+                " --> Successfully stored results for job %s (=%s)/%s to geoserver.",
+                self.process_id_with_prefix, self.process_id, self.job_id
             )
 
         except Exception as e:
             logging.error(
-                f" --> Could not store results for job {self.process_id_with_prefix} (={self.process_id})/{self.job_id} to geoserver: {e}",
+                " --> Could not store results for job %s (=%s)/%s to geoserver: %s",
+                self.process_id_with_prefix,
+                self.process_id,
+                self.job_id,
                 e,
             )
 
diff --git a/src/ump/api/job_comments.py b/src/ump/api/job_comments.py
index b220a81..7c1d00b 100644
--- a/src/ump/api/job_comments.py
+++ b/src/ump/api/job_comments.py
@@ -1,12 +1,14 @@
+"""Comments for jobs."""
 from datetime import datetime
 
 from sqlalchemy import DateTime, String
-from sqlalchemy.orm import Mapped, mapped_column, declarative_base
+from sqlalchemy.orm import Mapped, declarative_base, mapped_column
 from sqlalchemy_serializer import SerializerMixin
 
 Base = declarative_base()
 
 class JobComment(Base, SerializerMixin):
+    """Comments for jobs."""
     __tablename__ = "job_comments"
 
     id: Mapped[int] = mapped_column(primary_key=True)
diff --git a/src/ump/api/job_status.py b/src/ump/api/job_status.py
index 938107f..977cf7d 100644
--- a/src/ump/api/job_status.py
+++ b/src/ump/api/job_status.py
@@ -1,11 +1,12 @@
 from enum import Enum
 
+
 class JobStatus(Enum):
-  """
-  Enum for the job status options specified in the WPS 2.0 specification
-  """
-  accepted = 'accepted'
-  running = 'running'
-  successful = 'successful'
-  failed = 'failed'
-  dismissed = 'dismissed'
+    """
+    Enum for the job status options specified in the WPS 2.0 specification
+    """
+    accepted = 'accepted'
+    running = 'running'
+    successful = 'successful'
+    failed = 'failed'
+    dismissed = 'dismissed'
diff --git a/src/ump/api/jobs.py b/src/ump/api/jobs.py
index 5cf2c12..d386258 100644
--- a/src/ump/api/jobs.py
+++ b/src/ump/api/jobs.py
@@ -3,123 +3,121 @@
 from sqlalchemy import create_engine, select
 from sqlalchemy.orm import Session
 
-from ump.api.ensemble import JobsEnsembles, Ensemble
 from ump.api.db_handler import DBHandler
+from ump.api.ensemble import Ensemble, JobsEnsembles
 from ump.api.job import Job
 from ump.api.job_status import JobStatus
 
 engine = create_engine("postgresql+psycopg2://postgres:postgres@postgis/cut_dev")
 def append_ensemble_list(job):
-  with Session(engine) as session:
-    stmt = select(JobsEnsembles).where(JobsEnsembles.job_id == job['jobID'])
-    ids = session.scalars(stmt).fetchall()
-    list = []
-    for id in ids:
-      list.append(id.ensemble_id)
-    stmt = select(Ensemble).where(Ensemble.id.in_(list))
-    ensembles = session.scalars(stmt).fetchall()
-    job['ensembles'] = []
-    for ensemble in ensembles:
-      job['ensembles'].append(ensemble.to_dict())
+    with Session(engine) as session:
+        stmt = select(JobsEnsembles).where(JobsEnsembles.job_id == job['jobID'])
+        ids = session.scalars(stmt).fetchall()
+        results = []
+        for id_pair in ids:
+            results.append(id_pair.ensemble_id)
+        stmt = select(Ensemble).where(Ensemble.id.in_(results))
+        ensembles = session.scalars(stmt).fetchall()
+        job['ensembles'] = []
+        for ensemble in ensembles:
+            job['ensembles'].append(ensemble.to_dict())
 
 def get_jobs(args, user = None):
-  page  = int(args["page"][0]) if "page" in args else 1
-  limit = int(args["limit"][0]) if "limit" in args else None
-
-  jobs = []
-  query = """
-    SELECT j.job_id FROM jobs j left join jobs_users u on j.job_id = u.job_id
-  """
-  query_params = {}
-  conditions = []
-  user = None if user is None else user['sub']
-  if user is not None:
-    conditions.append(f"j.user_id = '{user}' or j.user_id is null or u.user_id = '{user}'")
-  else:
-    conditions.append('j.user_id is null')
-
-  if 'processID' in args and args['processID']:
-    # this processID is actually the process_id_with_prefix!!!
-    # we cannot change the name because it would not be OGC processes compliant anymore
-    process_ids = []
-
-    for process_id_with_prefix in args['processID']:
-      match = re.search(r'(.*):(.*)', process_id_with_prefix)
-      provider_prefix = match.group(1)
-      process_ids.append(match.group(2))
-
-    conditions.append("process_id IN %(process_id)s")
-    query_params['process_id'] = tuple(process_ids)
-
-    conditions.append("provider_prefix = %(provider_prefix)s")
-    query_params['provider_prefix'] = provider_prefix
-
-  if 'status' in args:
-    query_params['status'] = tuple(args['status'])
-
-  else:
-    query_params['status'] = (
-      JobStatus.running.value, JobStatus.successful.value,
-      JobStatus.failed.value, JobStatus.dismissed.value
-    )
-  conditions.append("status IN %(status)s")
-
-  db_handler = DBHandler()
-  db_handler.set_sortable_columns(Job.SORTABLE_COLUMNS)
-
-  with db_handler as db:
-    job_ids = db.run_query(query,
-      conditions   = conditions,
-      query_params = query_params,
-      order        = ['created'],
-      limit        = limit,
-      page         = page
-    )
-
-  for row in job_ids:
-    job = Job(row['job_id'], user)
-    jobs.append(job.display())
-
-  count_jobs = count(conditions, query_params)
-  links = next_links(page, limit, count_jobs)
-
-  return { "jobs": jobs, "links": links, "total_count": count_jobs }
+    page  = int(args["page"][0]) if "page" in args else 1
+    limit = int(args["limit"][0]) if "limit" in args else None
+
+    jobs = []
+    query = """
+      SELECT j.job_id FROM jobs j left join jobs_users u on j.job_id = u.job_id
+    """
+    query_params = {}
+    conditions = []
+    user = None if user is None else user['sub']
+    if user is not None:
+        conditions.append(f"j.user_id = '{user}' or j.user_id is null or u.user_id = '{user}'")
+    else:
+        conditions.append('j.user_id is null')
+
+    if 'processID' in args and args['processID']:
+        # this processID is actually the process_id_with_prefix!!!
+        # we cannot change the name because it would not be OGC processes compliant anymore
+        process_ids = []
+
+        for process_id_with_prefix in args['processID']:
+            match = re.search(r'(.*):(.*)', process_id_with_prefix)
+            provider_prefix = match.group(1)
+            process_ids.append(match.group(2))
+
+        conditions.append("process_id IN %(process_id)s")
+        query_params['process_id'] = tuple(process_ids)
+
+        conditions.append("provider_prefix = %(provider_prefix)s")
+        query_params['provider_prefix'] = provider_prefix
+
+    if 'status' in args:
+        query_params['status'] = tuple(args['status'])
+
+    else:
+        query_params['status'] = (
+            JobStatus.running.value, JobStatus.successful.value,
+            JobStatus.failed.value, JobStatus.dismissed.value
+        )
+    conditions.append("status IN %(status)s")
+
+    db_handler = DBHandler()
+    db_handler.set_sortable_columns(Job.SORTABLE_COLUMNS)
+
+    with db_handler as db:
+        job_ids = db.run_query(query,
+            conditions   = conditions,
+            query_params = query_params,
+            order        = ['created'],
+            limit        = limit,
+            page         = page
+        )
+
+    for row in job_ids:
+        job = Job(row['job_id'], user)
+        jobs.append(job.display())
+
+    count_jobs = count(conditions, query_params)
+    links = next_links(page, limit, count_jobs)
+
+    return { "jobs": jobs, "links": links, "total_count": count_jobs }
 
 def next_links(page, limit, count_jobs):
-  if not limit or count_jobs <= limit:
-    return []
-
-  links = []
-  if count_jobs > (page - 1) * limit:
-    links.append({
-      "href": f"/api/jobs?page={page+1}&limit={limit}",
-      "rel": "service",
-      "type": "application/json",
-      "hreflang": "en",
-      "title": f"Next page of jobs."
-    })
-
-  if page > 1:
-    links.append({
-      "href": f"/api/jobs?page={page-1}&limit={limit}",
-      "rel": "service",
-      "type": "application/json",
-      "hreflang": "en",
-      "title": f"Previous page of jobs."
-    })
-
-  return links
+    if not limit or count_jobs <= limit:
+        return []
+
+    links = []
+    if count_jobs > (page - 1) * limit:
+        links.append({
+            "href": f"/api/jobs?page={page+1}&limit={limit}",
+            "rel": "service",
+            "type": "application/json",
+            "hreflang": "en",
+            "title": "Next page of jobs."
+        })
+
+    if page > 1:
+        links.append({
+            "href": f"/api/jobs?page={page-1}&limit={limit}",
+            "rel": "service",
+            "type": "application/json",
+            "hreflang": "en",
+            "title": "Previous page of jobs."
+        })
+
+    return links
 
 def count(conditions, query_params):
-  count_query = """
-    SELECT count(*) FROM jobs j left join jobs_users u on j.job_id = u.job_id
-  """
-  with DBHandler() as db:
-    count_jobs = db.run_query(
-      count_query,
-      conditions=conditions,
-      query_params=query_params
-    )
-  return count_jobs[0]['count']
-
-
+    count_query = """
+      SELECT count(*) FROM jobs j left join jobs_users u on j.job_id = u.job_id
+    """
+    with DBHandler() as db:
+        count_jobs = db.run_query(
+            count_query,
+            conditions=conditions,
+            query_params=query_params
+        )
+    return count_jobs[0]['count']
diff --git a/src/ump/api/keycloak.py b/src/ump/api/keycloak_utils.py
similarity index 87%
rename from src/ump/api/keycloak.py
rename to src/ump/api/keycloak_utils.py
index bca43f5..d5fb045 100644
--- a/src/ump/api/keycloak.py
+++ b/src/ump/api/keycloak_utils.py
@@ -1,3 +1,4 @@
+"""Keycloak helper functions"""
 from os import environ as env
 
 from keycloak import KeycloakAdmin, KeycloakOpenIDConnection
@@ -17,6 +18,7 @@
 
 
 def find_user_id_by_email(email):
+    """Retrieves a user id by email"""
     users = keycloak_admin.get_users({"email": email})
     for user in users:
         if user["email"] == email:
@@ -25,5 +27,6 @@ def find_user_id_by_email(email):
 
 
 def get_user_name(user_id):
+    """Retrieve the username by user id"""
     user = keycloak_admin.get_user(user_id)
     return user["username"] if user else None
diff --git a/src/ump/api/process.py b/src/ump/api/process.py
index aada34b..6f290da 100644
--- a/src/ump/api/process.py
+++ b/src/ump/api/process.py
@@ -24,11 +24,14 @@ def __init__(self, process_id_with_prefix=None):
         self.outputs: dict
 
         self.process_id_with_prefix = process_id_with_prefix
+        self.process_title = None
 
         match = re.search(r"([^:]+):(.*)", self.process_id_with_prefix)
         if not match:
             raise InvalidUsage(
-                f"Process ID {self.process_id_with_prefix} is not known! Please check endpoint api/processes for a list of available processes."
+                "Process ID %s is not known! Please check endpoint api/processes " +
+                "for a list of available processes.",
+                self.process_id_with_prefix
             )
 
         self.provider_prefix = match.group(1)
@@ -38,7 +41,9 @@ def __init__(self, process_id_with_prefix=None):
             self.provider_prefix, self.process_id
         ):
             raise InvalidUsage(
-                f"Process ID {self.process_id_with_prefix} is not known! Please check endpoint api/processes for a list of available processes."
+                "Process ID %s is not known! Please check endpoint api/processes " +
+                "for a list of available processes.",
+                self.process_id_with_prefix
             )
 
         auth = g.get("auth_token")
@@ -57,7 +62,9 @@ def __init__(self, process_id_with_prefix=None):
                 and role not in auth["resource_access"]["ump-client"]["roles"]
             ):
                 raise InvalidUsage(
-                    f"Process ID {self.process_id_with_prefix} is not known! Please check endpoint api/processes for a list of available processes."
+                    "Process ID %s is not known! Please check endpoint api/processes " +
+                    "for a list of available processes.",
+                    self.process_id_with_prefix
                 )
 
         asyncio.run(self.set_details())
@@ -80,7 +87,8 @@ async def set_details(self):
 
             if response.status != 200:
                 raise InvalidUsage(
-                    f"Model/process not found! {response.status}: {response.reason}. Check /api/processes endpoint for available models/processes."
+                    f"Model/process not found! {response.status}: {response.reason}. " +
+                    "Check /api/processes endpoint for available models/processes.",
                 )
 
             process_details = await response.json()
@@ -93,7 +101,7 @@ def validate_params(self, parameters):
 
         if not "job_name" in parameters:
             raise InvalidUsage(
-                f"Parameter job_name is required",
+                "Parameter job_name is required",
                 payload={"parameter_description": self.inputs["job_name"]},
             )
 
@@ -112,8 +120,10 @@ def validate_params(self, parameters):
                             payload={"parameter_description": parameter_metadata},
                         )
                     else:
-                        logging.warn(
-                            f"Model execution {self.process_id_with_prefix} started without parameter {input}."
+                        logging.warning(
+                            "Model execution %s started without parameter %s.",
+                            self.process_id_with_prefix,
+                            input
                         )
                         continue
 
@@ -166,10 +176,10 @@ def validate_params(self, parameters):
                 if "pattern" in schema:
                     assert re.search(schema["pattern"], param)
 
-            except AssertionError:
+            except AssertionError as exc:
                 raise InvalidUsage(
                     f"Invalid parameter {input} = {param}: does not match mandatory schema {schema}"
-                )
+                ) from exc
 
     def is_required(self, parameter_metadata):
         if "required" in parameter_metadata:
@@ -183,16 +193,21 @@ def is_required(self, parameter_metadata):
 
         return False
 
-    def execute(self, parameters, user, ensemble_id=None):
+    def execute(self, parameters, user):
         p = providers.PROVIDERS[self.provider_prefix]
 
         self.validate_params(parameters)
 
         logging.info(
-            f" --> Executing {self.process_id} on model server {p['url']} with params {parameters} as process {self.process_id_with_prefix} for user {user}"
+            " --> Executing %s on model server %s with params %s as process %s for user %s",
+            self.process_id,
+            p['url'],
+            parameters,
+            self.process_id_with_prefix,
+            user
         )
 
-        job = asyncio.run(self.start_process_execution(parameters, user, ensemble_id))
+        job = asyncio.run(self.start_process_execution(parameters, user))
 
         _process = dummy.Process(target=self._wait_for_results_async, args=([job]))
         _process.start()
@@ -200,7 +215,7 @@ def execute(self, parameters, user, ensemble_id=None):
         result = {"jobID": job.job_id, "status": job.status}
         return result
 
-    async def start_process_execution(self, request_body, user, ensemble_id=None):
+    async def start_process_execution(self, request_body, user):
         # execution mode:
         # to maintain backwards compatibility to models using
         # pre-1.0.0 versions of OGC api processes
@@ -266,13 +281,15 @@ async def start_process_execution(self, request_body, user, ensemble_id=None):
                     job.save()
 
                     logging.info(
-                        f" --> Job {job.job_id} for model {self.process_id_with_prefix} started running."
+                        " --> Job %s for model %s started running.",
+                        job.job_id,
+                        self.process_id_with_prefix
                     )
 
                     return job
 
         except Exception as e:
-            raise CustomException(f"Job could not be started remotely: {e}")
+            raise CustomException(f"Job could not be started remotely: {e}") from e
 
     def _wait_for_results_async(self, job: Job):
         asyncio.run(self._wait_for_results(job))
@@ -307,7 +324,7 @@ async def _wait_for_results(self, job: Job):
 
                 finished = self.is_finished(job_details)
 
-                logging.info(" --> Current Job status: " + str(job_details))
+                logging.info(" --> Current Job status: %s", str(job_details))
 
                 # either remote job has progress info or else we cannot provide it either
                 job.progress = job_details.get("progress")
@@ -323,12 +340,19 @@ async def _wait_for_results(self, job: Job):
                 time.sleep(config.fetch_job_results_interval)
 
             logging.info(
-                f" --> Remote execution job {job.remote_job_id}: success = {finished}. Took approx. {int((time.time() - start)/60)} minutes."
+                " --> Remote execution job %s: success = %s. Took approx. %s minutes.",
+                job.remote_job_id,
+                finished,
+                int((time.time() - start)/60)
             )
 
         except Exception as e:
             logging.error(
-                f" --> Could not retrieve results for job {self.process_id_with_prefix} (={self.process_id})/{job.job_id} from simulation model server: {e}"
+                " --> Could not retrieve results for job %s (=%s)/%s from simulation model server: %s",
+                self.process_id_with_prefix,
+                self.process_id,
+                job.job_id,
+                e
             )
             job.status = JobStatus.failed.value
             job.message = str(e)
@@ -337,8 +361,8 @@ async def _wait_for_results(self, job: Job):
             job.progress = 100
             job.save()
             raise CustomException(
-                "Could not retrieve results from simulation model server. {e}"
-            )
+                f"Could not retrieve results from simulation model server. {e}"
+            ) from e
 
         # Check if job was successful
         try:
@@ -354,7 +378,7 @@ async def _wait_for_results(self, job: Job):
                 raise CustomException(f"Remote job {job.remote_job_id}: {job.message}")
 
         except CustomException as e:
-            logging.error(f" --> An error occurred: {e}")
+            logging.error(" --> An error occurred: %s", e)
 
         job.status = JobStatus.successful.value
         job.finished = datetime.now(timezone.utc).strftime("%Y-%m-%dT%H:%M:%S.%fZ")
@@ -371,7 +395,11 @@ async def _wait_for_results(self, job: Job):
                 await job.results_to_geoserver()
         except Exception as e:
             logging.error(
-                f" --> Could not store results for job {self.process_id_with_prefix} (={self.process_id})/{job.job_id} to geoserver: {e}"
+                " --> Could not store results for job %s (=%s)/%s to geoserver: %s",
+                self.process_id_with_prefix,
+                self.process_id,
+                job.job_id,
+                e
             )
             job.message = str(e)
             job.save()
@@ -410,7 +438,11 @@ def to_json(self):
         )
 
     def __str__(self):
-        return f"src.process.Process object: process_id={self.process_id}, process_id_with_prefix={self.process_id_with_prefix}, provider_prefix={self.provider_prefix}"
+        return (
+            f"src.process.Process object: process_id={self.process_id}, " +
+            f"process_id_with_prefix={self.process_id_with_prefix}, " +
+            f"provider_prefix={self.provider_prefix}"
+        )
 
     def __repr__(self):
         return f"src.process.Process(process_id={self.process_id})"
diff --git a/src/ump/api/processes.py b/src/ump/api/processes.py
index 07f9433..466f49c 100644
--- a/src/ump/api/processes.py
+++ b/src/ump/api/processes.py
@@ -38,7 +38,10 @@ async def all_processes():
 
             except Exception as e:
                 logging.error(
-                    f"Cannot access {provider} provider at url \"{p['url']}/processes\"! {e}"
+                    "Cannot access %s provider at url \"%s/processes\"! %s",
+                    provider,
+                    p['url'],
+                    e
                 )
                 traceback.print_exc()
                 processes[provider] = []
@@ -57,7 +60,7 @@ def _processes_list(results):
     for provider in providers.PROVIDERS:
         provider_access = provider in realm_roles or provider in client_roles
         if provider_access:
-            logging.debug(f"Granting access for model server {provider}")
+            logging.debug("Granting access for model server %s", provider)
         try:
             # Check if process has special configuration
             for process in results[provider]:
@@ -66,14 +69,16 @@ def _processes_list(results):
                 process_config = providers.PROVIDERS[provider]["processes"][process['id']]
                 public_access = 'anonymous-access' in process_config and process_config['anonymous-access']
                 if public_access or process_access or provider_access:
-                    logging.debug(f"Granting access for process {process['id']}")
+                    logging.debug("Granting access for process %s", process['id'])
 
                 if not public_access and not provider_access and not process_access:
-                    logging.debug(f"Not granting access for {process['id']}")
+                    logging.debug("Not granting access for %s", process['id'])
                     continue
 
                 logging.debug(
-                    f"Checking process {process['id']} of provider {providers.PROVIDERS[provider]['name']} "
+                    "Checking process %s of provider %s",
+                    process['id'],
+                    providers.PROVIDERS[provider]['name']
                 )
 
                 if providers.check_process_availability(provider, process["id"]):
@@ -81,12 +86,13 @@ def _processes_list(results):
                     processes.append(process)
 
                 else:
-                    logging.debug(f"Process ID  {process['id']} is not configured.")
+                    logging.debug("Process ID %s is not configured.", process['id'])
                     continue
 
         except Exception as e:
             logging.error(
-                f"Something seems to be wrong with the configuration of model servers: {e}"
+                "Something seems to be wrong with the configuration of model servers: %s",
+                e
             )
             traceback.print_exc()
 
diff --git a/src/ump/api/providers.py b/src/ump/api/providers.py
index 4072f8f..55850a7 100644
--- a/src/ump/api/providers.py
+++ b/src/ump/api/providers.py
@@ -1,26 +1,25 @@
 import logging
 import os
 
-from watchdog.observers import Observer
-from watchdog.events import FileSystemEventHandler
-
 import aiohttp
 import yaml
+from watchdog.events import FileSystemEventHandler
+from watchdog.observers import Observer
 
-import ump.config as config
+from ump import config
 
 PROVIDERS: dict = {}
 
-with open(config.PROVIDERS_FILE) as file:
+with open(config.PROVIDERS_FILE, encoding="UTF-8") as file:
     if content := yaml.safe_load(file):
         PROVIDERS.update(content)
 
 class ProviderLoader(FileSystemEventHandler):
-    def on_modified(event):
+    def on_modified(self, event):
         if event.src_path == config.PROVIDERS_FILE:
-            with open(config.PROVIDERS_FILE) as file:
-                if content := yaml.safe_load(file):
-                    PROVIDERS.update(content)
+            with open(config.PROVIDERS_FILE, encoding="UTF-8") as to_reload:
+                if new_content := yaml.safe_load(to_reload):
+                    PROVIDERS.update(new_content)
 
 observer = Observer()
 observer.schedule(ProviderLoader(), os.path.dirname(config.PROVIDERS_FILE), recursive=False)
@@ -37,18 +36,23 @@ def authenticate_provider(p):
 
 
 def check_process_availability(provider, process_id):
-
     available = False
 
     if provider in PROVIDERS and process_id in PROVIDERS[provider]["processes"]:
         available = True
 
         if "exclude" in PROVIDERS[provider]["processes"][process_id]:
-            logging.debug(f"Excluding process {process_id} based on configuration")
+            logging.debug("Excluding process %s based on configuration", process_id)
             available = False
 
     return available
 
 
 def check_result_storage(provider, process_id):
-    return PROVIDERS.get(provider, {}).get("processes", {}).get(process_id, {}).get("result-storage", None)
+    return (
+        PROVIDERS
+        .get(provider, {})
+        .get("processes", {})
+        .get(process_id, {})
+        .get("result-storage", None)
+    )
diff --git a/src/ump/api/routes/ensembles.py b/src/ump/api/routes/ensembles.py
index 8b1037f..3f1c71d 100644
--- a/src/ump/api/routes/ensembles.py
+++ b/src/ump/api/routes/ensembles.py
@@ -1,3 +1,4 @@
+"""The ensemble related routes"""
 import builtins
 import copy
 import json
@@ -19,7 +20,7 @@
 
 from ump.api.ensemble import Comment, Ensemble, EnsemblesUsers, JobsEnsembles
 from ump.api.job import Job
-from ump.api.keycloak import find_user_id_by_email
+from ump.api.keycloak_utils import find_user_id_by_email
 from ump.api.process import Process
 
 ensembles = APIBlueprint("ensembles", __name__)
@@ -28,9 +29,12 @@
 
 
 def add_job_fields(ensemble: Ensemble):
+    """Adds the synthetic jobs_metadata field"""
     with engine.begin() as conn:
         result = conn.exec_driver_sql(
-            "select count(*), j.status from jobs j right join jobs_ensembles je on j.job_id = je.job_id where je.ensemble_id = %(id)s group by j.status",
+            """select count(*), j.status from jobs j
+            right join jobs_ensembles je on j.job_id = je.job_id
+            where je.ensemble_id = %(id)s group by j.status""",
             {"id": ensemble.id},
         )
         ensemble.jobs_metadata = {}
@@ -40,6 +44,7 @@ def add_job_fields(ensemble: Ensemble):
 
 @ensembles.route("/", methods=["GET"])
 def index():
+    """Gets all ensembles the current user has access to"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -57,15 +62,16 @@ def index():
             )
         )
         result = session.scalars(stmt).fetchall()
-        list = []
+        response = []
         for ensemble in result:
             add_job_fields(ensemble)
-            list.append(ensemble.to_dict(rules=["jobs_metadata"]))
-        return list
+            response.append(ensemble.to_dict(rules=["jobs_metadata"]))
+        return response
 
 
 @ensembles.route("/", methods=["POST"])
 def create():
+    """Create an ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         logging.error("Not creating ensemble, no authentication found.")
@@ -90,6 +96,7 @@ def create():
 
 @ensembles.route("/<path:ensemble_id>/comments", methods=["GET"])
 def get_comments(ensemble_id):
+    """Get the comments for an ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -113,7 +120,7 @@ def get_comments(ensemble_id):
         stmt = (
             select(Comment)
             .join(
-                EnsemblesUsers, EnsemblesUsers.ensemble_id == Ensemble.id, isouter=True
+                EnsemblesUsers, EnsemblesUsers.ensemble_id == ensemble_id, isouter=True
             )
             .where(
                 or_(
@@ -123,19 +130,20 @@ def get_comments(ensemble_id):
             )
             .where(Comment.ensemble_id == ensemble_id)
         )
-        list = []
+        results = []
         for comment in session.scalars(stmt).fetchall():
-            list.append(comment.to_dict())
-        return list
+            results.append(comment.to_dict())
+        return results
 
 
 @ensembles.route("/<path:ensemble_id>/share/<path:email>", methods=["GET"])
 def share(ensemble_id=None, email=None):
-    auth = g.get("auth_token")
-    id = find_user_id_by_email(email)
-    if id is None:
-        logging.error(f"Unable to find user by email {email}.")
-        return Response(status=404)
+    """Share an ensemble with another user"""
+    auth = g.get('auth_token')
+    user_id = find_user_id_by_email(email)
+    if user_id is None:
+        logging.error("Unable to find user by email %s.", email)
+        return Response(status = 404)
     with Session(engine) as session:
         stmt = (
             select(Ensemble)
@@ -154,7 +162,7 @@ def share(ensemble_id=None, email=None):
         if ensemble is None:
             return Response(status=404)
 
-        row = EnsemblesUsers(ensemble_id=ensemble_id, user_id=id)
+        row = EnsemblesUsers(ensemble_id = ensemble_id, user_id = user_id)
         session.add(row)
         session.commit()
         return Response(status=201)
@@ -162,6 +170,7 @@ def share(ensemble_id=None, email=None):
 
 @ensembles.route("/<path:ensemble_id>/comments", methods=["POST"])
 def create_comment(ensemble_id):
+    """Create a comment for an ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         logging.error("Not creating comment, no authentication found.")
@@ -181,6 +190,7 @@ def create_comment(ensemble_id):
 
 @ensembles.route("/<path:ensemble_id>", methods=["GET"])
 def get(ensemble_id):
+    """Get an ensemble by id"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -206,20 +216,22 @@ def get(ensemble_id):
 
 @ensembles.route("/<path:ensemble_id>/jobs", methods=["GET"])
 def jobs(ensemble_id):
+    """Get all jobs included in an ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
     with Session(engine) as session:
         stmt = select(JobsEnsembles).where(JobsEnsembles.ensemble_id == ensemble_id)
         ids = session.scalars(stmt).fetchall()
-        list = []
+        results = []
         for row in ids:
-            list.append(Job(row.job_id, auth["sub"]).display())
-        return Response(json.dumps(list), mimetype="application/json")
+            results.append(Job(row.job_id, auth["sub"]).display())
+        return Response(json.dumps(results), mimetype="application/json")
 
 
 @ensembles.route("/<path:ensemble_id>/jobs/<path:job_id>", methods=["DELETE"])
 def delete_job_from_ensemble(ensemble_id, job_id):
+    """Delete a job from an ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -244,6 +256,7 @@ def delete_job_from_ensemble(ensemble_id, job_id):
 
 @ensembles.route("/<path:ensemble_id>/execute", methods=["GET"])
 def execute(ensemble_id):
+    """Create and execute the jobs in this ensemble"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -264,14 +277,16 @@ def execute(ensemble_id):
         ensemble = session.scalar(stmt)
         if ensemble is None:
             return Response("No such ensemble", status=400)
-        jobs = create_jobs(ensemble, auth)
-        for job in jobs:
+        job_list = create_jobs(ensemble, auth)
+        for job in job_list:
             session.add(JobsEnsembles(ensemble_id=ensemble_id, job_id=job["jobID"]))
         session.commit()
-        return Response(json.dumps(jobs), mimetype="application/json")
+        return Response(json.dumps(job_list), mimetype="application/json")
 
 
 def create_jobs_for_config(config):
+    """Creates the job configurations for an ensemble using
+    the configured parameters and sampling method"""
     params = []
     process_config = {"process_id": config["process_id"], "inputs": {}}
     sampler = None
@@ -297,21 +312,22 @@ def create_jobs_for_config(config):
             case _:
                 process_config["inputs"][param] = val
     samples = sample_parameters(params, config["sample_size"], sampler=sampler)
-    list = []
+    results = []
     for sample in samples:
         x = copy.deepcopy(process_config)
         x["inputs"] = x["inputs"] | dict(sample)
-        list.append(x)
-    return list
+        results.append(x)
+    return results
 
 
 def create_jobs(ensemble: Ensemble, auth):
+    """Create the jobs for an ensemble"""
     configs = ensemble.scenario_configs
-    list = []
+    results = []
     for config in configs:
-        list = list + create_jobs_for_config(config)
+        results = results + create_jobs_for_config(config)
     result_list = []
-    for config in list:
+    for config in results:
         process = Process(config["process_id"])
         job_name = ensemble.name + " - " + generate_name(style="plain")
         result_list.append(
diff --git a/src/ump/api/routes/jobs.py b/src/ump/api/routes/jobs.py
index a0ddda8..fc24786 100644
--- a/src/ump/api/routes/jobs.py
+++ b/src/ump/api/routes/jobs.py
@@ -5,14 +5,14 @@
 
 from apiflask import APIBlueprint
 from flask import Response, g, request
-from sqlalchemy import create_engine, select, or_
+from sqlalchemy import create_engine, or_, select
 from sqlalchemy.orm import Session
 
-from ump.api.keycloak import find_user_id_by_email
 from ump.api.ensemble import JobsUsers
 from ump.api.job import Job
 from ump.api.job_comments import JobComment
 from ump.api.jobs import append_ensemble_list, get_jobs
+from ump.api.keycloak_utils import find_user_id_by_email
 
 jobs = APIBlueprint("jobs", __name__)
 
@@ -30,31 +30,33 @@ def index(page):
 
 
 @jobs.route("/<path:job_id>/results", methods=["GET"])
-def results(job_id=None):
+def get_results(job_id=None):
     auth = g.get("auth_token")
     job = Job(job_id, None if auth is None else auth["sub"])
     return Response(json.dumps(asyncio.run(job.results())), mimetype="application/json")
 
 @jobs.route("/<path:job_id>/share/<path:email>", methods=["GET"])
 def share(job_id=None, email=None):
+    """Share a job with another user"""
     auth = g.get('auth_token')
-    id = find_user_id_by_email(email)
-    if id is None:
-        logging.error(f"Unable to find user by email {email}.")
+    user_id = find_user_id_by_email(email)
+    if user_id is None:
+        logging.error("Unable to find user by email %s.", email)
         return Response(status = 404)
     job = Job(job_id, None if auth is None else auth['sub'])
     if job is None:
-        logging.error(f"Unable to find job with id {job_id}.")
+        logging.error("Unable to find job with id %s.", job_id)
         return Response(status = 404)
 
     with Session(engine) as session:
-        row = JobsUsers(job_id = job_id, user_id = id)
+        row = JobsUsers(job_id = job_id, user_id = user_id)
         session.add(row)
         session.commit()
         return Response(status = 201)
 
 @jobs.route("/<path:job_id>/comments", methods=["GET"])
 def get_comments(job_id):
+    """Get all comments for a job"""
     auth = g.get("auth_token")
     if auth is None:
         return Response("[]", mimetype="application/json")
@@ -65,14 +67,15 @@ def get_comments(job_id):
             .where(or_(JobComment.user_id == auth["sub"], JobsUsers.user_id == auth['sub']))
             .where(JobComment.job_id == job_id)
         )
-        list = []
+        results = []
         for comment in session.scalars(stmt).fetchall():
-            list.append(comment.to_dict())
-        return list
+            results.append(comment.to_dict())
+        return results
 
 
 @jobs.route("/<path:job_id>/comments", methods=["POST"])
 def create_comment(job_id):
+    """Create a comment for a job"""
     auth = g.get("auth_token")
     if auth is None:
         logging.error("Not creating comment, no authentication found.")
diff --git a/src/ump/api/routes/users.py b/src/ump/api/routes/users.py
index f61cdd8..7a3a80d 100644
--- a/src/ump/api/routes/users.py
+++ b/src/ump/api/routes/users.py
@@ -1,15 +1,16 @@
+"""Endpoints to access user information via keycloak"""
 import json
 
 from apiflask import APIBlueprint
 from flask import Response, g
 
-from ump.api.keycloak import get_user_name
+from ump.api.keycloak_utils import get_user_name
 
 users = APIBlueprint("users", __name__)
 
-
 @users.route("/<path:user_id>/name")
 def index(user_id=None):
+    "Retrieve user name by user id"
     auth = g.get("auth_token")
     if auth is None:
         return Response(mimetype="application/json", status=401)
diff --git a/src/ump/config.py b/src/ump/config.py
index 3f5a969..f9d721c 100644
--- a/src/ump/config.py
+++ b/src/ump/config.py
@@ -1,3 +1,4 @@
+"""Extracts env variables"""
 import os
 
 PROVIDERS_FILE = os.environ.get("PROVIDERS_FILE", "providers.yaml")
@@ -23,5 +24,4 @@
 geoserver_workspace = os.environ.get("GEOSERVER_WORKSPACE", "CUT")
 geoserver_admin_user = os.environ.get("GEOSERVER_ADMIN_USER", "admin")
 geoserver_admin_password = os.environ.get("GEOSERVER_ADMIN_PASSWORD", "geoserver")
-
-geoserver_timeout = 60
+GEOSERVER_TIMEOUT = 60
diff --git a/src/ump/errors.py b/src/ump/errors.py
index dbe9f30..e45db62 100644
--- a/src/ump/errors.py
+++ b/src/ump/errors.py
@@ -1,5 +1,6 @@
-import traceback
 import logging
+import traceback
+
 
 class CustomException(Exception):
     status_code = 400
@@ -11,7 +12,7 @@ def __init__(self, message, status_code=None, payload=None):
             self.status_code = status_code
 
         self.payload = payload
-        logging.error(f"{type(self).__name__}: {self.message}")
+        logging.error("%s: %s", type(self).__name__, self.message)
         traceback.print_exc()
 
     def to_dict(self):
@@ -20,10 +21,10 @@ def to_dict(self):
         return rv
 
     def __str__(self) -> str:
-       return str(self.to_dict())
+        return str(self.to_dict())
 
 class InvalidUsage(CustomException):
-  pass
+    pass
 
 class GeoserverException(CustomException):
-  pass
+    pass
diff --git a/src/ump/geoserver/geoserver.py b/src/ump/geoserver/geoserver.py
index 798e51c..d8a73f5 100644
--- a/src/ump/geoserver/geoserver.py
+++ b/src/ump/geoserver/geoserver.py
@@ -1,4 +1,3 @@
-import json
 import logging
 import os
 import shutil
@@ -8,14 +7,13 @@
 from psycopg2.sql import Identifier
 from sqlalchemy import create_engine
 
-import ump.config as config
+from ump import config
 from ump.errors import GeoserverException
 
 logging.basicConfig(level=os.environ.get("LOGLEVEL", "WARNING"))
 
 
 class Geoserver:
-
     RESULTS_FILENAME = "results.geojson"
 
     def __init__(self):
@@ -25,7 +23,6 @@ def __init__(self):
         self.job_id = None
 
     def create_workspace(self):
-
         url = f"{config.geoserver_workspaces_url}/{self.workspace}.json?quietOnNotFound=True"
 
         response = requests.get(
@@ -36,11 +33,11 @@ def create_workspace(self):
         )
 
         if response.status_code == 200:
-            logging.info(f" --> Workspace {self.workspace} already exists.")
+            logging.info(" --> Workspace %s already exists.", self.workspace)
             return True
 
         if response.status_code == 404:
-            logging.info(f" --> Workspace {self.workspace} not found - creating....")
+            logging.info(" --> Workspace %s not found - creating....", self.workspace)
         else:
             raise GeoserverException(
                 f"Geoserver workspace {self.workspace} was not found"
@@ -51,45 +48,51 @@ def create_workspace(self):
             auth=(config.geoserver_admin_user, config.geoserver_admin_password),
             data=f"<workspace><name>{self.workspace}</name></workspace>",
             headers={"Content-type": "text/xml", "Accept": "*/*"},
+            timeout=config.GEOSERVER_TIMEOUT,
         )
 
         if response.ok:
-            logging.info(f" --> Created new workspace {self.workspace}.")
+            logging.info(" --> Created new workspace %s.", self.workspace)
         else:
-            raise GeoserverException(f"Workspace could not be created")
+            raise GeoserverException("Workspace could not be created")
 
     def save_results(self, job_id: str, data: dict):
         self.job_id = job_id
 
         try:
             self.create_workspace()
-            logging.info(f" --> Workspace should be created now")
+            logging.info(" --> Workspace should be created now")
 
             self.geojson_to_postgis(data=data, table_name=job_id)
 
-            success = self.create_store(store_name=job_id, table_name=job_id)
+            success = self.create_store(store_name=job_id)
 
             success = self.publish_layer(store_name=job_id, layer_name=job_id)
 
         except Exception as e:
             raise GeoserverException(
-                f"Result could not be uploaded to the geoserver.",
+                "Result could not be uploaded to the geoserver.",
                 payload={"error": type(e).__name__, "message": e},
-            )
+            ) from e
         return success
 
     def publish_layer(self, store_name: str, layer_name: str):
         try:
             response = requests.post(
-                f"{config.geoserver_workspaces_url}/{self.workspace}/datastores/{store_name}/featuretypes",
+                f"{config.geoserver_workspaces_url}/{self.workspace}" +
+                    "/datastores/{store_name}/featuretypes",
                 auth=(config.geoserver_admin_user, config.geoserver_admin_password),
                 data=f"<featureType><name>{layer_name}</name></featureType>",
                 headers={"Content-type": "text/xml"},
+                timeout=config.GEOSERVER_TIMEOUT,
             )
 
             if not response or not response.ok:
                 logging.error(
-                    f"Could not publish layer {layer_name} from store {store_name}. Reason: {response}"
+                    "Could not publish layer %s from store %s. Reason: %s",
+                    layer_name,
+                    store_name,
+                    response
                 )
 
         except Exception as e:
@@ -99,12 +102,12 @@ def publish_layer(self, store_name: str, layer_name: str):
                     "error": type(e).__name__,
                     "message": e,
                 },
-            )
+            ) from e
 
         return response.ok
 
-    def create_store(self, store_name: str, table_name: str):
-        logging.info(f" --> Storing results to geoserver store {store_name}")
+    def create_store(self, store_name: str):
+        logging.info(" --> Storing results to geoserver store %s", store_name)
 
         xml_body = f"""
     <dataStore>
@@ -124,6 +127,7 @@ def create_store(self, store_name: str, table_name: str):
             auth=(config.geoserver_admin_user, config.geoserver_admin_password),
             data=xml_body,
             headers={"Content-type": "application/xml"},
+            timeout=config.GEOSERVER_TIMEOUT,
         )
 
         if not response or not response.ok:
@@ -138,7 +142,8 @@ def create_store(self, store_name: str, table_name: str):
 
     def geojson_to_postgis(self, table_name: str, data: dict):
         engine = create_engine(
-            f"postgresql://{config.postgres_user}:{config.postgres_password}@{config.postgres_host}/{config.postgres_db}"
+            f"postgresql://{config.postgres_user}:{config.postgres_password}" +
+                "@{config.postgres_host}/{config.postgres_db}"
         )
         gdf = gpd.GeoDataFrame.from_features(data["features"], crs = 'EPSG:4326')
         table = Identifier(table_name)