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陈老师,您好,我在跑geta的第二步2.homolog_prediction时,出现以下报错: failed to execute: /public/home/geta/bin/homolog_prediction --tmp_dir /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction --cpu 30 --identity 0.2 --evalue 1e-9 --homolog_coverage 0.3 --max_hits_num_per_match_region 10 --max_hit_num_per_single_species 2 --method exonerate,genewise,gth --threshod_ratio_of_intron_Supported_times 0.0 --genetic_code 1 --output_alignment_GFF3 /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/homolog_alignment.gff3 --output_raw_GFF3 /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.raw.gff3 /public/home/project/FX-geta/FX.tmp/homolog.fasta /public/home/project/FX-geta/FX.tmp/genome.fasta > /public/home/project/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.gff3 2> /public/home/project/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.log 随后我单独运行了genewise,出现以下报错: genewise /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/Chr01.49687_50382.start20354.AT2G01050_1.homolog.fasta /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/Chr01.49687_50382.start20354.AT2G01050_1.genome.fasta -codon /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/codon.table -trev -gff -genesf > /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/genewise/Chr01.49687_50382.start20354.AT2G01050_1.gff Warning Error Unable to open gene.stat as gene stats file Warning Error Could not read gene statistics in gene.stat Warning Error Could not open BLOSUM62.bla as a filename for read Blast matrix Warning Error Could not read Comparison matrix file in BLOSUM62.bla Fatal Error Could not build objects! 请问,应该如何解决这个问题?谢谢
The text was updated successfully, but these errors were encountered:
你好,我也遇到了一样的报错,请问你解决了吗?
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陈老师,您好,我在跑geta的第二步2.homolog_prediction时,出现以下报错:
failed to execute: /public/home/geta/bin/homolog_prediction --tmp_dir /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction --cpu 30 --identity 0.2 --evalue 1e-9 --homolog_coverage 0.3 --max_hits_num_per_match_region 10 --max_hit_num_per_single_species 2 --method exonerate,genewise,gth --threshod_ratio_of_intron_Supported_times 0.0 --genetic_code 1 --output_alignment_GFF3 /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/homolog_alignment.gff3 --output_raw_GFF3 /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.raw.gff3 /public/home/project/FX-geta/FX.tmp/homolog.fasta /public/home/project/FX-geta/FX.tmp/genome.fasta > /public/home/project/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.gff3 2> /public/home/project/FX-geta/FX.tmp/2.homolog_prediction/homolog_prediction.log
随后我单独运行了genewise,出现以下报错:
genewise /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/Chr01.49687_50382.start20354.AT2G01050_1.homolog.fasta /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/Chr01.49687_50382.start20354.AT2G01050_1.genome.fasta -codon /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/codon.table -trev -gff -genesf > /public/home/project/1_cooperate/FX-geta/FX.tmp/2.homolog_prediction/b.hitToGenePrediction/chunk0/genewise/Chr01.49687_50382.start20354.AT2G01050_1.gff
Warning Error
Unable to open gene.stat as gene stats file
Warning Error
Could not read gene statistics in gene.stat
Warning Error
Could not open BLOSUM62.bla as a filename for read Blast matrix
Warning Error
Could not read Comparison matrix file in BLOSUM62.bla
Fatal Error
Could not build objects!
请问,应该如何解决这个问题?谢谢
The text was updated successfully, but these errors were encountered: