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求助第三步Transcript 运行报错 #21

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Lithops123 opened this issue Feb 23, 2023 · 1 comment
Open

求助第三步Transcript 运行报错 #21

Lithops123 opened this issue Feb 23, 2023 · 1 comment

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@Lithops123
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Step 3: Transcript
PWD: ~/3_geta/3/p/out.tmp/3.transcript
CMD(Skipped): ~/software/geta-geta-2.4.12//bin/split_sam_from_non_aligned_region ../2.hisat2/hisat2.sorted.sam splited_sam_out 10 > splited_sam_files.list
Thu Feb 23 15:12:44 2023: CMD: ParaFly -c command.sam2transfrag.list -CPU 30 &> /dev/null
CMD(Skipped): ParaFly -c command.sam2transfrag.list -CPU 30 &> /dev/null
Thu Feb 23 15:41:25 2023: CMD: ~/software/geta-geta-2.4.12//TransDecoder-v5.5.0/TransDecoder.LongOrfs -m 100 -G universal -t transfrag.strand.fasta -S &> /dev/null
failed to execute: ~/software/geta-geta-2.4.12//TransDecoder-v5.5.0/TransDecoder.LongOrfs -m 100 -G universal -t transfrag.strand.fasta -S &> /dev/null
老师请问一下 遇到这种情况是什么原因呢 该怎么解决

@changchuanjun
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@Lithops123 Hello,I also met this problem when I run geta pipeline.Have you sloved this problem?I am looking forward to your reply sincerely

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