You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am trying to import a set of genes in cellxgene at launch time using the --gene-sets-file command, but I always get the following error message: Error: Unable to read genesets CSV file: Gene set CSV file missing the required column header.
The whole launch command I am using is: ./cellxgene launch --gene-sets-file genes.csv nathans_30dims_k40_res0.2_analysed_assigned.h5ad -p 5005
The cellxgene version is cellxgene v1.1.2 and the launch works perfectly fine without the import with ./cellxgene launch nathans_30dims_k40_res0.2_analysed_assigned.h5ad -p 5005
The GUI is accessible at localhost:5005 withtout any problem.
The genes.csv file looks like this: Rho,Epha7,Gnat1
I tried a bunch of different formats for the csv file without any success.
Is there an expected format that will work for the import?
Thank you in advance for your consideration.
The text was updated successfully, but these errors were encountered:
Hello,
I am trying to import a set of genes in cellxgene at launch time using the
--gene-sets-file
command, but I always get the following error message:Error: Unable to read genesets CSV file: Gene set CSV file missing the required column header.
The whole launch command I am using is:
./cellxgene launch --gene-sets-file genes.csv nathans_30dims_k40_res0.2_analysed_assigned.h5ad -p 5005
The cellxgene version is cellxgene v1.1.2 and the launch works perfectly fine without the import with
./cellxgene launch nathans_30dims_k40_res0.2_analysed_assigned.h5ad -p 5005
The GUI is accessible at
localhost:5005
withtout any problem.The genes.csv file looks like this:
Rho,Epha7,Gnat1
I tried a bunch of different formats for the csv file without any success.
Is there an expected format that will work for the import?
Thank you in advance for your consideration.
The text was updated successfully, but these errors were encountered: