Generate table_precursor table from hivintact output #162

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Python application

	on: push

	jobs:
	build:

	runs-on: ubuntu-22.04

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python 3.10
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'
	- name: Install minimap2
	run: \|
	cd /opt
	wget https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2
	tar -jxvf ./minimap2-2.17_x64-linux.tar.bz2
	echo /opt/minimap2-2.17_x64-linux >> $GITHUB_PATH
	- name: Install dependencies
	run: \|
	sudo apt install -qq mafft ncbi-blast+
	python -m pip install --upgrade pip pipenv
	pipenv install --dev
	- name: Test with pytest
	run: \|
	pipenv run python -m pytest

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