README.md

genetracks

Generate track diagrams for genomic alignments

see examples/Genetracks.ipynb for use cases

Example

from genetracks import Figure, Track
import pysam
import sys

f = Figure()

for alignment in pysam.AlignmentFile(sys.argv[1]):
  f.add(Track(alignment.query_start, alignment.query_end))

f.show(w=900).save_svg("alignment.svg")