bin: make subtype a required option

cfe-lab · Jul 17, 2023 · 14f571d · 14f571d
1 parent 04ced76
commit 14f571d
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/bin/proviral.py b/bin/proviral.py
@@ -29,6 +29,7 @@ def cli():
 )
 @click.option(
     '--subtype',
+    required=True,
     type=click.Choice(st.subtypes())
 )
 @click.option(
@@ -69,9 +70,6 @@ def intact(input_file, subtype, include_packaging_signal,
     Check consensus sequences for intactness.
     """
 
-    if subtype is None:
-        raise ValueError('Must select a subtype using the --subtype option.')
-
     log.info('Intactness called.')
     folder = get_working_folder(working_folder)