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add scramble and nonhiv checks as command line options main #34: Commit 845db4a pushed by Donaim
March 12, 2024 20:09 1m 22s master
master
March 12, 2024 20:09 1m 22s
split is_scrambled and contains_internal_inversion checks main #33: Commit 9c2d3c5 pushed by Donaim
March 12, 2024 20:09 1m 1s master
master
March 12, 2024 20:09 1m 1s
rename check_nonhiv to is_nonhiv and check_scramble to is_scrambled main #32: Commit 11a6003 pushed by Donaim
March 12, 2024 20:09 1m 4s master
master
March 12, 2024 20:09 1m 4s
fix message spacing bug main #31: Commit 5f82fcc pushed by Donaim
March 12, 2024 20:09 52s master
master
March 12, 2024 20:09 52s
use @dataclass decorators for all types main #30: Commit 8c6c7b0 pushed by Donaim
March 12, 2024 20:09 1m 18s master
master
March 12, 2024 20:09 1m 18s
return proper errors in scramble checks main #29: Commit a20d7c3 pushed by Donaim
March 12, 2024 20:09 1m 3s master
master
March 12, 2024 20:09 1m 3s
move blast checks into the main intact.py file main #28: Commit 619bcd0 pushed by Donaim
March 12, 2024 20:09 1m 22s master
master
March 12, 2024 20:09 1m 22s
move blast to wrappers main #27: Commit b979e78 pushed by Donaim
March 12, 2024 20:09 1m 0s master
master
March 12, 2024 20:09 1m 0s
wrappers: remove unused imports main #26: Commit f80201a pushed by Donaim
March 12, 2024 20:09 56s master
master
March 12, 2024 20:09 56s
dont use working_dir for temporary files at all main #25: Commit be84524 pushed by Donaim
March 12, 2024 20:09 1m 6s master
master
March 12, 2024 20:09 1m 6s
mafft wrapper: simplify temporary files handling main #24: Commit 9c4f2be pushed by Donaim
March 12, 2024 20:08 51s master
master
March 12, 2024 20:08 51s
keep the default working dir main #23: Commit 0aaa045 pushed by Donaim
March 12, 2024 20:08 54s master
master
March 12, 2024 20:08 54s
do not remove the working dir main #22: Commit 4b1894f pushed by Donaim
March 12, 2024 20:08 51s master
master
March 12, 2024 20:08 51s
only recognize fasta files for subtypes main #21: Commit 3775511 pushed by Donaim
March 12, 2024 20:08 58s master
master
March 12, 2024 20:08 58s
test: make file locations independent of where pytest is run from main #20: Commit 1b9b909 pushed by Donaim
March 12, 2024 20:08 53s master
master
March 12, 2024 20:08 53s
add blast checks main #19: Commit e77222b pushed by Donaim
March 12, 2024 20:08 1m 10s master
master
March 12, 2024 20:08 1m 10s
add BLAST database index files main #18: Commit 2f8c44d pushed by Donaim
March 12, 2024 20:08 57s master
master
March 12, 2024 20:08 57s
test: use correct expected_output file name main #17: Commit 3272eb1 pushed by Donaim
March 12, 2024 20:08 58s master
master
March 12, 2024 20:08 58s
silent mafft subprocess main #16: Commit 3e0bb26 pushed by Donaim
March 12, 2024 20:08 1m 4s master
master
March 12, 2024 20:08 1m 4s
pass mafft wrapper arguments properly quoted main #15: Commit e394f01 pushed by Donaim
March 12, 2024 20:08 57s master
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March 12, 2024 20:08 57s
test: finish huge test implementation main #14: Commit 653fa69 pushed by Donaim
March 12, 2024 20:08 51s master
master
March 12, 2024 20:08 51s
use named tuples for received ORFs main #13: Commit 8a35df6 pushed by Donaim
March 12, 2024 20:08 1m 13s master
master
March 12, 2024 20:08 1m 13s
fix reading_frames_single_stranded description main #12: Commit f3c5e40 pushed by Donaim
March 12, 2024 20:08 1m 12s master
master
March 12, 2024 20:08 1m 12s
remove unused constant main #11: Commit c3cd2c3 pushed by Donaim
March 12, 2024 20:08 54s master
master
March 12, 2024 20:08 54s
use named tuples for expected ORFs main #10: Commit 7236c7c pushed by Donaim
March 12, 2024 20:08 58s master
master
March 12, 2024 20:08 58s
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