diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml
index 55778e56..44cb7b72 100644
--- a/.github/workflows/cd.yml
+++ b/.github/workflows/cd.yml
@@ -17,7 +17,7 @@ jobs:
   # whether the workflow is triggered from a PR, a push to main, or a release, respectively.
   python-packaging:
     name: 🐍 Packaging
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.5
     with:
       # Do not include local version information on pushes to main to facilitate TestPyPI uploads.
       no-local-version: ${{ github.ref == 'refs/heads/main' && github.event_name == 'push' }}
@@ -60,7 +60,7 @@ jobs:
           path: dist
           merge-multiple: true
       - name: Generate artifact attestation for sdist and wheel(s)
-        uses: actions/attest-build-provenance@v1.4.4
+        uses: actions/attest-build-provenance@v2
         with:
           subject-path: "dist/*"
       - uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index dd8a2886..d19aacde 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -14,37 +14,37 @@ concurrency:
 jobs:
   change-detection:
     name: 🔍 Change
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-change-detection.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-change-detection.yml@v1.5
 
   cpp-tests:
     name: 🇨‌ Test
     needs: change-detection
     if: fromJSON(needs.change-detection.outputs.run-cpp-tests)
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-cpp-ci.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-cpp-ci.yml@v1.5
 
   cpp-linter:
     name: 🇨‌ Lint
     needs: change-detection
     if: fromJSON(needs.change-detection.outputs.run-cpp-linter)
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-cpp-linter.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-cpp-linter.yml@v1.5
 
   python-tests:
     name: 🐍 Test
     needs: change-detection
     if: fromJSON(needs.change-detection.outputs.run-python-tests)
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-ci.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-ci.yml@v1.5
 
   code-ql:
     name: 📝 CodeQL
     needs: change-detection
     if: fromJSON(needs.change-detection.outputs.run-code-ql)
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-code-ql.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-code-ql.yml@v1.5
 
   cd:
     name: 🚀 CD
     needs: change-detection
     if: fromJSON(needs.change-detection.outputs.run-cd)
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-python-packaging.yml@v1.5
 
   required-checks-pass: # This job does nothing and is only used for branch protection
     name: 🚦 Check
diff --git a/.github/workflows/update-mqt-core.yml b/.github/workflows/update-mqt-core.yml
index 28ad5487..2ca8dbec 100644
--- a/.github/workflows/update-mqt-core.yml
+++ b/.github/workflows/update-mqt-core.yml
@@ -21,6 +21,6 @@ concurrency:
 jobs:
   update-mqt-core:
     name: ⬆️ Update MQT Core
-    uses: cda-tum/mqt-workflows/.github/workflows/reusable-mqt-core-update.yml@v1.4
+    uses: cda-tum/mqt-workflows/.github/workflows/reusable-mqt-core-update.yml@v1.5
     with:
       update-to-head: ${{ github.event.inputs.update-to-head == 'true' }}
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 0e99e937..a9687f7a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -59,7 +59,7 @@ repos:
 
   #  Python linting and formatting using ruff
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.3
+    rev: v0.8.2
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -87,13 +87,13 @@ repos:
 
   # Check for spelling
   - repo: https://github.com/crate-ci/typos
-    rev: v1.28.2
+    rev: typos-dict-v0.11.37
     hooks:
       - id: typos
 
   # Clang-format the C++ part of the code base automatically
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v19.1.4
+    rev: v19.1.5
     hooks:
       - id: clang-format
         types_or: [c++, c, cuda]
@@ -140,6 +140,6 @@ repos:
 
   # Check the pyproject.toml file
   - repo: https://github.com/henryiii/validate-pyproject-schema-store
-    rev: 2024.11.11
+    rev: 2024.11.25
     hooks:
       - id: validate-pyproject
diff --git a/noxfile.py b/noxfile.py
index f8c5589d..16920497 100644
--- a/noxfile.py
+++ b/noxfile.py
@@ -61,13 +61,13 @@ def _run_tests(
     if shutil.which("ninja") is None:
         session.install("ninja")
 
-    _extras = ["test", *extras]
+    extras_ = ["test", *extras]
     if "--cov" in posargs:
-        _extras.append("coverage")
+        extras_.append("coverage")
         posargs.append("--cov-config=pyproject.toml")
 
     session.install(*BUILD_REQUIREMENTS, *install_args, env=env)
-    install_arg = f"-ve.[{','.join(_extras)}]"
+    install_arg = f"-ve.[{','.join(extras_)}]"
     session.install("--no-build-isolation", install_arg, *install_args, env=env)
     session.run("pytest", *run_args, *posargs, env=env)
 
diff --git a/pyproject.toml b/pyproject.toml
index 44715592..74860c9d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -57,7 +57,7 @@ dependencies = [
     "numba>=0.57; python_version <= '3.11'",
     "pymatching>=2.2.1",
     "qsample>=0.0.2",
-    "urllib3>=1.26.20,<2.0", # Required by qsample
+    "urllib3>=1.26.20", # Required by qsample (to be removed)
     "fastcore>=1.7.10" # Required by qsample (to be removed)
 ]
 dynamic = ["version"]
@@ -157,14 +157,20 @@ addopts = ["-ra", "--strict-markers", "--strict-config", "--showlocals"]
 log_cli_level = "INFO"
 xfail_strict = true
 filterwarnings = [
-    "error",
-    "ignore:.*pkg_resources.*:DeprecationWarning:",
-    "ignore:.*The retworkx package is deprecated*:DeprecationWarning:pymatching",
-    'ignore:.*qiskit.providers.provider.Provider.*:DeprecationWarning:',
-    'ignore::DeprecationWarning:.*(simpleeval).*',
-    'ignore::RuntimeWarning:.*(qsample).*',
-    'ignore:.*invalid escape sequence.*::.*qsample.*',
-    'ignore:.*invalid escape sequence.*::.*latextools.*',
+  "error",
+  "ignore:.*pkg_resources.*:DeprecationWarning:",
+  "ignore:.*The retworkx package is deprecated*:DeprecationWarning:pymatching",
+  'ignore:.*qiskit.providers.provider.Provider.*:DeprecationWarning:',
+  'ignore::DeprecationWarning:.*(simpleeval).*',
+  'ignore::RuntimeWarning:.*(qsample).*',
+  'ignore:.*invalid escape sequence.*::.*qsample.*',
+  'ignore:.*invalid escape sequence.*::.*latextools.*',
+  # Qiskit 1.3 deprecations
+  'ignore:.*``qiskit.dagcircuit.dagcircuit.DAGCircuit.*`` is deprecated as of qiskit 1.3.0.*:DeprecationWarning:',
+  'ignore:.*``qiskit.circuit.instruction.Instruction.condition`` is deprecated as of qiskit 1.3.0.*:DeprecationWarning:',
+  'ignore:.*Conditioned gates in qasm2 will be loaded as an IfElseOp starting in Qiskit 2.0.*:FutureWarning:',
+  'ignore:.*``qiskit.circuit.singleton.*`` is deprecated as of qiskit 1.3.0.*:DeprecationWarning:',
+  'ignore:.*``qiskit.circuit.instruction.Instruction.c_if.*`` is deprecated as of qiskit 1.3.0.*:DeprecationWarning:',
 ]
 
 [tool.coverage]
@@ -243,20 +249,17 @@ extend-select = [
     "SLOT",        # flake8-slots
     "SIM",         # flake8-simplify
     "T20",         # flake8-print
-    "TCH",         # flake8-type-checking
+    "TC",          # flake8-type-checking
     "TID251",      # flake8-tidy-imports.banned-api
     "TRY",         # tryceratops
     "UP",          # pyupgrade
     "YTT",         # flake8-2020
 ]
 ignore = [
-    "ANN101",  # Missing type annotation for `self` in method
-    "ANN102",  # Missing type annotation for `cls` in classmethod
     "ISC001",  # Conflicts with formatter
     "PLR09",   # Too many <...>
     "PLR2004", # Magic value used in comparison
     "PLC0415", # Import should be at top of file
-    "PT004",   # Incorrect, just usefixtures instead.
     "S101",    # Use of assert detected
 ]
 isort.required-imports = ["from __future__ import annotations"]
@@ -304,7 +307,7 @@ archs = "auto64"
 test-command = "python -c \"from mqt import qecc\""
 test-skip = ["cp313*"] # skip testing on Python 3.13 until our dependencies are ready
 build-frontend = "build[uv]"
-free-threaded-support = true
+enable = ["cpython-freethreading"]
 manylinux-x86_64-image = "manylinux_2_28"
 manylinux-aarch64-image = "manylinux_2_28"
 manylinux-ppc64le-image = "manylinux_2_28"
diff --git a/src/mqt/qecc/analog_information_decoding/utils/data_utils.py b/src/mqt/qecc/analog_information_decoding/utils/data_utils.py
index edfde229..4ae3122e 100644
--- a/src/mqt/qecc/analog_information_decoding/utils/data_utils.py
+++ b/src/mqt/qecc/analog_information_decoding/utils/data_utils.py
@@ -258,19 +258,19 @@ def merge_datasets(datasets: list[dict[str, Any]]) -> dict[str, Any]:
     return merged_data
 
 
-def _merge_datasets_x(_datasets: list[dict[str, Any]]) -> dict[str, Any]:
+def _merge_datasets_x(datasets_: list[dict[str, Any]]) -> dict[str, Any]:
     """Merges a list of dictionaries into a single dictionary.
 
     The values for the fields "nr_runs", "x_success_cnt" and "z_success_cnt" are extracted from each dictionary and added together.
 
     Args:
-        datasets (List[Dict[str, Any]]): A list of dictionaries to be merged.
+        datasets_ (List[Dict[str, Any]]): A list of dictionaries to be merged.
 
     Returns:
         Dict[str, Any]: A dictionary containing the merged data.
     """
     # remove datasets that do not contain x_success_cnt
-    datasets = [data for data in _datasets if "x_success_cnt" in data]
+    datasets = [data for data in datasets_ if "x_success_cnt" in data]
 
     if not datasets:
         return {}
@@ -305,19 +305,19 @@ def _merge_datasets_x(_datasets: list[dict[str, Any]]) -> dict[str, Any]:
     return merged_data
 
 
-def _merge_datasets_z(_datasets: list[dict[str, Any]]) -> dict[str, Any]:
+def _merge_datasets_z(datasets_: list[dict[str, Any]]) -> dict[str, Any]:
     """Merges a list of dictionaries into a single dictionary. The values for the fields "nr_runs".
 
     "x_success_cnt" and "z_success_cnt" are extracted from each dictionary and added together.
 
     Args:
-        datasets (List[Dict[str, Any]]): A list of dictionaries to be merged.
+        datasets_ (List[Dict[str, Any]]): A list of dictionaries to be merged.
 
     Returns:
         Dict[str, Any]: A dictionary containing the merged data.
     """
     # remove datasets that do not contain z_success_cnt
-    datasets = [data for data in _datasets if "z_success_cnt" in data]
+    datasets = [data for data in datasets_ if "z_success_cnt" in data]
 
     if not datasets:
         return {}
diff --git a/src/mqt/qecc/cc_decoder/plots.py b/src/mqt/qecc/cc_decoder/plots.py
index 02355b6a..b2d02778 100644
--- a/src/mqt/qecc/cc_decoder/plots.py
+++ b/src/mqt/qecc/cc_decoder/plots.py
@@ -48,7 +48,7 @@ def threshold_fit(
     """Compute standard fit function for the threshold."""
     p, ell = variables
     expr = (p - pth) * (ell ** (1 / mu))
-    return cast(float, b0 + b1 * expr + b2 * (expr**2))
+    return cast("float", b0 + b1 * expr + b2 * (expr**2))
 
 
 def calculate_threshold(
diff --git a/src/mqt/qecc/circuit_synthesis/encoding.py b/src/mqt/qecc/circuit_synthesis/encoding.py
index a25044d1..875155f9 100644
--- a/src/mqt/qecc/circuit_synthesis/encoding.py
+++ b/src/mqt/qecc/circuit_synthesis/encoding.py
@@ -36,7 +36,7 @@ def heuristic_encoding_circuit(
     Returns:
         The synthesized encoding circuit and the qubits that are used to encode the logical qubits.
     """
-    logging.info("Starting encoding circuit synthesis.")
+    logger.info("Starting encoding circuit synthesis.")
 
     checks, logicals, use_x_checks = _get_matrix_with_fewest_checks(code)
     n_checks = checks.shape[0]
@@ -93,7 +93,7 @@ def gate_optimal_encoding_circuit(
     Returns:
         The synthesized encoding circuit and the qubits that are used to encode the logical qubits.
     """
-    logging.info("Starting optimal encoding circuit synthesis.")
+    logger.info("Starting optimal encoding circuit synthesis.")
     checks, logicals, use_x_checks = _get_matrix_with_fewest_checks(code)
     assert checks is not None
     n_checks = checks.shape[0]
@@ -141,7 +141,7 @@ def depth_optimal_encoding_circuit(
     Returns:
         The synthesized encoding circuit and the qubits that are used to encode the logical qubits.
     """
-    logging.info("Starting optimal encoding circuit synthesis.")
+    logger.info("Starting optimal encoding circuit synthesis.")
     checks, logicals, use_x_checks = _get_matrix_with_fewest_checks(code)
     assert checks is not None
     n_checks = checks.shape[0]
diff --git a/src/mqt/qecc/circuit_synthesis/simulation.py b/src/mqt/qecc/circuit_synthesis/simulation.py
index 6759632d..8232b788 100644
--- a/src/mqt/qecc/circuit_synthesis/simulation.py
+++ b/src/mqt/qecc/circuit_synthesis/simulation.py
@@ -19,6 +19,8 @@
 
     from ..codes import CSSCode
 
+logger = logging.getLogger(__name__)
+
 
 class NoisyNDFTStatePrepSimulator:
     """Class for simulating noisy state preparation circuit using a depolarizing noise model."""
@@ -245,8 +247,7 @@ def logical_error_rate(
         while i <= int(np.ceil(shots / batch)) or at_least_min_errors:
             num_logical_errors_batch, discarded_batch = self._simulate_batch(batch)
 
-            logging.log(
-                logging.INFO,
+            logger.info(
                 f"Batch {i}: {num_logical_errors_batch} logical errors and {discarded_batch} discarded shots. {batch - discarded_batch} shots used.",
             )
             p_l_batch = num_logical_errors_batch / (batch - discarded_batch) if discarded_batch != batch else 0.0
diff --git a/src/mqt/qecc/circuit_synthesis/state_prep.py b/src/mqt/qecc/circuit_synthesis/state_prep.py
index 862bf090..b3ce71a0 100644
--- a/src/mqt/qecc/circuit_synthesis/state_prep.py
+++ b/src/mqt/qecc/circuit_synthesis/state_prep.py
@@ -101,7 +101,7 @@ def compute_fault_set(
             return faults
 
         if num_errors == 1:
-            logging.info("Computing fault set for 1 error.")
+            logger.info("Computing fault set for 1 error.")
             dag = circuit_to_dag(self.circ)
             for node in dag.front_layer():  # remove hadamards
                 dag.remove_op_node(node)
@@ -121,7 +121,7 @@ def compute_fault_set(
                 non_propagated_single_errors = np.eye(self.num_qubits, dtype=np.int8)
                 self.z_fault_sets_unreduced[1] = np.vstack((faults, non_propagated_single_errors))
         else:
-            logging.info(f"Computing fault set for {num_errors} errors.")
+            logger.info(f"Computing fault set for {num_errors} errors.")
             self.compute_fault_set(num_errors - 1, x_errors, reduce=reduce)
             if x_errors:
                 faults = self.x_fault_sets_unreduced[num_errors - 1]
@@ -147,7 +147,7 @@ def compute_fault_set(
 
         # remove stabilizer equivalent faults
         if reduce:
-            logging.info("Removing stabilizer equivalent faults.")
+            logger.info("Removing stabilizer equivalent faults.")
             faults = _remove_stabilizer_equivalent_faults(faults, stabs)
         if x_errors:
             self.x_fault_sets[num_errors] = faults
@@ -189,7 +189,7 @@ def combine_faults(
 
     def _set_max_errors(self) -> None:
         if self.code.distance == 2:
-            logging.warning("Code distance is 2, assuming error detection code.")
+            logger.warning("Code distance is 2, assuming error detection code.")
             self.error_detection_code = True
 
         self.max_errors = (self.code.distance - 1) // 2 if not self.error_detection_code else self.code.distance // 2
@@ -226,7 +226,7 @@ def heuristic_prep_circuit(code: CSSCode, optimize_depth: bool = True, zero_stat
         optimize_depth: If True, optimize the depth of the circuit. This may lead to a higher number of CNOTs.
         zero_state: If True, prepare the +1 eigenstate of the Z basis. If False, prepare the +1 eigenstate of the X basis.
     """
-    logging.info("Starting heuristic state preparation.")
+    logger.info("Starting heuristic state preparation.")
     if code.Hx is None or code.Hz is None:
         msg = "The code must have both X and Z stabilizers defined."
         raise InvalidCSSCodeError(msg)
@@ -391,12 +391,12 @@ def all_gate_optimal_verification_stabilizers(
 
     # Find the optimal circuit for every number of errors in the preparation circuit
     for num_errors in range(1, max_errors + 1):
-        logging.info(f"Finding verification stabilizers for {num_errors} errors")
+        logger.info(f"Finding verification stabilizers for {num_errors} errors")
         faults = fault_sets[num_errors]
         assert faults is not None
 
         if len(faults) == 0:
-            logging.info(f"No non-trivial faults for {num_errors} errors")
+            logger.info(f"No non-trivial faults for {num_errors} errors")
             layers[num_errors - 1] = []
             continue
         # Start with maximal number of ancillas
@@ -406,7 +406,7 @@ def all_gate_optimal_verification_stabilizers(
         min_cnots: int = np.min(np.sum(checks, axis=1))
         max_cnots: int = np.sum(checks)
 
-        logging.info(
+        logger.info(
             f"Finding verification stabilizers for {num_errors} errors with {min_cnots} to {max_cnots} CNOTs using {num_anc} ancillas"
         )
 
@@ -427,21 +427,21 @@ def fun(num_cnots: int) -> list[npt.NDArray[np.int8]] | None:
             measurements = None
 
         if measurements is None:
-            logging.info(f"No verification stabilizers found for {num_errors} errors")
+            logger.info(f"No verification stabilizers found for {num_errors} errors")
             return []  # No solution found
 
-        logging.info(f"Found verification stabilizers for {num_errors} errors with {num_cnots} CNOTs")
+        logger.info(f"Found verification stabilizers for {num_errors} errors with {num_cnots} CNOTs")
         # If any measurements are unused we can reduce the number of ancillas at least by that
         measurements = [m for m in measurements if np.any(m)]
         num_anc = len(measurements)
         # Iterate backwards to find the minimal number of cnots
-        logging.info(f"Finding minimal number of CNOTs for {num_errors} errors")
+        logger.info(f"Finding minimal number of CNOTs for {num_errors} errors")
 
         def search_cnots(num_cnots: int) -> list[npt.NDArray[np.int8]] | None:
             return verification_stabilizers(sp_circ, faults, num_anc, num_cnots, x_errors=x_errors)  # noqa: B023
 
         while num_cnots - 1 > 0:
-            logging.info(f"Trying {num_cnots - 1} CNOTs")
+            logger.info(f"Trying {num_cnots - 1} CNOTs")
 
             cnot_opt = run_with_timeout(
                 search_cnots,
@@ -453,12 +453,12 @@ def search_cnots(num_cnots: int) -> list[npt.NDArray[np.int8]] | None:
                 measurements = cnot_opt
             else:
                 break
-        logging.info(f"Minimal number of CNOTs for {num_errors} errors is: {num_cnots}")
+        logger.info(f"Minimal number of CNOTs for {num_errors} errors is: {num_cnots}")
 
         # If the number of CNOTs is minimal, we can reduce the number of ancillas
-        logging.info(f"Finding minimal number of ancillas for {num_errors} errors")
+        logger.info(f"Finding minimal number of ancillas for {num_errors} errors")
         while num_anc - 1 > 0:
-            logging.info(f"Trying {num_anc - 1} ancillas")
+            logger.info(f"Trying {num_anc - 1} ancillas")
 
             def search_anc(num_anc: int) -> list[npt.NDArray[np.int8]] | None:
                 return verification_stabilizers(sp_circ, faults, num_anc, num_cnots, x_errors=x_errors)  # noqa: B023
@@ -473,7 +473,7 @@ def search_anc(num_anc: int) -> list[npt.NDArray[np.int8]] | None:
                 measurements = anc_opt
             else:
                 break
-        logging.info(f"Minimal number of ancillas for {num_errors} errors is: {num_anc}")
+        logger.info(f"Minimal number of ancillas for {num_errors} errors is: {num_anc}")
         if not return_all_solutions:
             layers[num_errors - 1] = [measurements]
         else:
@@ -495,7 +495,7 @@ def _verification_circuit(
     full_fault_tolerance: bool = True,
     flag_first_layer: bool = False,
 ) -> QuantumCircuit:
-    logging.info("Finding verification stabilizers for the state preparation circuit")
+    logger.info("Finding verification stabilizers for the state preparation circuit")
     layers_1 = verification_stabs_fun(sp_circ, sp_circ.zero_state, None)
     measurements_1 = [measurement for layer in layers_1 for measurement in layer]
 
@@ -610,7 +610,7 @@ def heuristic_verification_stabilizers(
         find_coset_leaders: Whether to find coset leaders for the found measurements. This is done using SAT solvers so it can be slow.
         additional_faults: Faults to verify in addition to the faults propagating in the state preparation circuit.
     """
-    logging.info("Finding verification stabilizers using heuristic method")
+    logger.info("Finding verification stabilizers using heuristic method")
     max_errors = sp_circ.max_errors
     layers: list[list[npt.NDArray[np.int8]]] = [[] for _ in range(max_errors)]
     sp_circ.compute_fault_sets()
@@ -623,10 +623,10 @@ def heuristic_verification_stabilizers(
     )
     orthogonal_checks = sp_circ.z_checks if x_errors else sp_circ.x_checks
     for num_errors in range(1, max_errors + 1):
-        logging.info(f"Finding verification stabilizers for {num_errors} errors")
+        logger.info(f"Finding verification stabilizers for {num_errors} errors")
         faults = fault_sets[num_errors]
         assert faults is not None
-        logging.info(f"There are {len(faults)} faults")
+        logger.info(f"There are {len(faults)} faults")
         if len(faults) == 0:
             layers[num_errors - 1] = []
             continue
@@ -686,16 +686,16 @@ def _heuristic_layer(
     candidate_checks = checks[candidates]
     non_candidate_checks = checks[non_candidates]
 
-    logging.info("Converting Stabilizer Checks to covering sets")
+    logger.info("Converting Stabilizer Checks to covering sets")
     candidate_sets_ordered = [(_covers(s, faults), s, i) for i, s in enumerate(candidate_checks)]
     mapping = defaultdict(list)
     for cand, _, i in candidate_sets_ordered:
         mapping[cand].append(candidate_checks[i])
     candidate_sets = {cand for cand, _, _ in candidate_sets_ordered}
 
-    logging.info("Finding initial set cover")
+    logger.info("Finding initial set cover")
     cover = _set_cover(len(faults), candidate_sets, mapping)
-    logging.info(f"Initial set cover has {len(cover)} sets")
+    logger.info(f"Initial set cover has {len(cover)} sets")
 
     def cost(cover: set[frozenset[int]]) -> tuple[int, int]:
         cost1 = len(cover)
@@ -712,7 +712,7 @@ def cost(cover: set[frozenset[int]]) -> tuple[int, int]:
         # add all symmetric differences to candidates
         candidate_sets = _extend_covering_sets(candidate_sets, max_covering_sets, mapping)
         new_cover = _set_cover(len(faults), candidate_sets, mapping)
-        logging.info(f"New Covering set has {len(new_cover)} sets")
+        logger.info(f"New Covering set has {len(new_cover)} sets")
         new_cost1 = len(new_cover)
         new_cost2 = sum(np.sum(mapping[stab]) for stab in new_cover)
         if new_cost1 < cost1 or (new_cost1 == cost1 and new_cost2 < cost2):
@@ -725,9 +725,9 @@ def cost(cover: set[frozenset[int]]) -> tuple[int, int]:
         prev_candidates = candidate_sets
 
     # reduce stabilizers in cover
-    logging.info(f"Found covering set of size {len(cover)}.")
+    logger.info(f"Found covering set of size {len(cover)}.")
     if find_coset_leaders and len(non_candidates) > 0:
-        logging.info("Finding coset leaders.")
+        logger.info("Finding coset leaders.")
         measurements = []
         for c in cover:
             leaders = [coset_leader(m, non_candidate_checks) for m in mapping[c]]
@@ -944,7 +944,7 @@ def _remove_trivial_faults(
     faults: npt.NDArray[np.int8], stabs: npt.NDArray[np.int8], num_errors: int
 ) -> npt.NDArray[np.int8]:
     faults = faults.copy()
-    logging.info("Removing trivial faults.")
+    logger.info("Removing trivial faults.")
     max_w = 1
     for i, fault in enumerate(faults):
         faults[i] = coset_leader(fault, stabs)
@@ -962,7 +962,7 @@ def _remove_stabilizer_equivalent_faults(
     stabilizers = stabilizers.copy()
     removed = set()
 
-    logging.debug(f"Removing stabilizer equivalent faults from {len(faults)} faults.")
+    logger.debug(f"Removing stabilizer equivalent faults from {len(faults)} faults.")
     for i, f1 in enumerate(faults):
         if i in removed:
             continue
@@ -979,7 +979,7 @@ def _remove_stabilizer_equivalent_faults(
             if mod2.rank(stabs_ext2) == mod2.rank(stabs_ext1):
                 removed.add(j + i + 1)
 
-    logging.debug(f"Removed {len(removed)} stabilizer equivalent faults.")
+    logger.debug(f"Removed {len(removed)} stabilizer equivalent faults.")
     indices = list(set(range(len(faults))) - removed)
     if len(indices) == 0:
         return np.array([])
diff --git a/src/mqt/qecc/circuit_synthesis/state_prep_det.py b/src/mqt/qecc/circuit_synthesis/state_prep_det.py
index 69c834df..7ee90aa2 100644
--- a/src/mqt/qecc/circuit_synthesis/state_prep_det.py
+++ b/src/mqt/qecc/circuit_synthesis/state_prep_det.py
@@ -603,7 +603,7 @@ def deterministic_correction(
     for verify_outcome_int in range(1, 2**num_and_stabs):
         verify_outcome = _int_to_int8_array(verify_outcome_int, num_and_stabs)
         logger.info(
-            f"Computing deterministic verification for non-det outcome {verify_outcome}: {verify_outcome_int}/{2** num_and_stabs - 1}"
+            f"Computing deterministic verification for non-det outcome {verify_outcome}: {verify_outcome_int}/{2**num_and_stabs - 1}"
         )
 
         # only consider errors that triggered the verification pattern
diff --git a/src/mqt/qecc/circuit_synthesis/synthesis_utils.py b/src/mqt/qecc/circuit_synthesis/synthesis_utils.py
index 0aaac546..de575b36 100644
--- a/src/mqt/qecc/circuit_synthesis/synthesis_utils.py
+++ b/src/mqt/qecc/circuit_synthesis/synthesis_utils.py
@@ -52,7 +52,7 @@ def iterative_search_with_timeout(
     max_timeout: int,
     param_factor: float = 2,
     timeout_factor: float = 2,
-) -> None | tuple[None | QuantumCircuit, int]:
+) -> tuple[QuantumCircuit | None, int] | None:
     """Geometrically increases the parameter and timeout until a result is found or the maximum timeout is reached.
 
     Args:
@@ -68,7 +68,7 @@ def iterative_search_with_timeout(
     curr_param = min_param
     while curr_timeout <= max_timeout:
         while curr_param <= max_param:
-            logging.info(f"Running iterative search with param={curr_param} and timeout={curr_timeout}")
+            logger.info(f"Running iterative search with param={curr_param} and timeout={curr_timeout}")
             res = run_with_timeout(fun, curr_param, timeout=curr_timeout)
             if res is not None and (not isinstance(res, str) or res != "timeout"):
                 return res, curr_param
@@ -122,7 +122,7 @@ def is_reduced() -> bool:
         costs_unused = np.ma.array(costs, mask=m)  # type: ignore[no-untyped-call]
         if np.all(costs_unused >= 0) or len(used_columns) == matrix.shape[1]:  # no more reductions possible
             if used_columns == []:  # local minimum => get out by making matrix triangular
-                logging.warning("Local minimum reached. Making matrix triangular.")
+                logger.warning("Local minimum reached. Making matrix triangular.")
                 matrix = mod2.row_echelon(matrix, full=True)[0]
                 costs = np.array([
                     [np.sum((matrix[:, i] + matrix[:, j]) % 2) for j in range(matrix.shape[1])]
@@ -476,12 +476,12 @@ def optimal_elimination(
     reduced, eliminations = reduced
     curr_param = res[1]
 
-    logging.info(f"Solution found with param {curr_param}")
+    logger.info(f"Solution found with param {curr_param}")
     # Solving a SAT instance is much faster than proving unsat in this case
     # so we iterate backwards until we find an unsat instance or hit a timeout
-    logging.info("Trying to minimize param")
+    logger.info("Trying to minimize param")
     while True:
-        logging.info(f"Trying param {curr_param - 1}")
+        logger.info(f"Trying param {curr_param - 1}")
         opt_res = run_with_timeout(fun, curr_param - 1, timeout=max_timeout)
         if opt_res is None or (isinstance(opt_res, str) and opt_res == "timeout"):
             break
@@ -489,7 +489,7 @@ def optimal_elimination(
         reduced, eliminations = opt_res
         curr_param -= 1
 
-    logging.info(f"Optimal param: {curr_param}")
+    logger.info(f"Optimal param: {curr_param}")
     return reduced, eliminations
 
 
diff --git a/src/mqt/qecc/codes/pauli.py b/src/mqt/qecc/codes/pauli.py
index 7d94843f..4cda7e9b 100644
--- a/src/mqt/qecc/codes/pauli.py
+++ b/src/mqt/qecc/codes/pauli.py
@@ -184,7 +184,7 @@ def __ne__(self, other: object) -> bool:
 
     def __len__(self) -> int:
         """Return the number of Paulis in the tableau."""
-        return int(len(self.tableau))
+        return len(self.tableau)
 
     def all_commute(self, other: StabilizerTableau) -> bool:
         """Check if all Pauli operators in this stabilizer tableau commute with all Pauli operators in another stabilizer tableau."""
diff --git a/test/python/circuit_synthesis/test_encoder_synthesis.py b/test/python/circuit_synthesis/test_encoder_synthesis.py
index 2bba61f4..560da6ac 100644
--- a/test/python/circuit_synthesis/test_encoder_synthesis.py
+++ b/test/python/circuit_synthesis/test_encoder_synthesis.py
@@ -108,7 +108,7 @@ def test_heuristic_encoding_consistent(code: CSSCode, request) -> None:  # type:
     _assert_correct_encoding_circuit(encoder, encoding_qubits, code)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 @pytest.mark.parametrize("code", ["steane_code", "css_4_2_2_code", "css_6_2_2_code"])
 def test_gate_optimal_encoding_consistent(code: CSSCode, request) -> None:  # type: ignore[no-untyped-def]
     """Check that `gate_optimal_encoding_circuit` returns a valid circuit with the correct stabilizers."""
@@ -120,7 +120,7 @@ def test_gate_optimal_encoding_consistent(code: CSSCode, request) -> None:  # ty
     _assert_correct_encoding_circuit(encoder, encoding_qubits, code)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 @pytest.mark.parametrize("code", ["steane_code", "css_4_2_2_code", "css_6_2_2_code"])
 def test_depth_optimal_encoding_consistent(code: CSSCode, request) -> None:  # type: ignore[no-untyped-def]
     """Check that `gate_optimal_encoding_circuit` returns a valid circuit with the correct stabilizers."""
diff --git a/test/python/circuit_synthesis/test_simulation.py b/test/python/circuit_synthesis/test_simulation.py
index 2946815f..d74b9bb0 100644
--- a/test/python/circuit_synthesis/test_simulation.py
+++ b/test/python/circuit_synthesis/test_simulation.py
@@ -110,7 +110,7 @@ def test_non_ft_sim_zero(steane_code: CSSCode, non_ft_steane_zero: QuantumCircui
     assert p_l - tol > lower
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_ft_sim_zero(steane_code: CSSCode, ft_steane_zero: QuantumCircuit) -> None:
     """Test the simulation of a fault-tolerant state preparation circuit for the Steane |0>."""
     tol = 5e-4
@@ -133,7 +133,7 @@ def test_non_ft_sim_plus(steane_code: CSSCode, non_ft_steane_plus: QuantumCircui
     assert p_l - tol > lower
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_ft_sim_plus(steane_code: CSSCode, ft_steane_plus: QuantumCircuit) -> None:
     """Test the simulation of a fault-tolerant state preparation circuit for the Steane |0>."""
     tol = 5e-4
diff --git a/test/python/circuit_synthesis/test_stateprep.py b/test/python/circuit_synthesis/test_stateprep.py
index a285ee5b..5f39cbda 100644
--- a/test/python/circuit_synthesis/test_stateprep.py
+++ b/test/python/circuit_synthesis/test_stateprep.py
@@ -116,7 +116,7 @@ def test_heuristic_prep_consistent(code: CSSCode, request) -> None:  # type: ign
     assert eq_span(np.vstack((code.Hz, code.Lz)), z)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 @pytest.mark.parametrize("code", ["steane_code", "css_4_2_2_code", "css_6_2_2_code"])
 def test_gate_optimal_prep_consistent(code: CSSCode, request) -> None:  # type: ignore[no-untyped-def]
     """Check that gate_optimal_prep_circuit returns a valid circuit with the correct stabilizers."""
@@ -136,7 +136,7 @@ def test_gate_optimal_prep_consistent(code: CSSCode, request) -> None:  # type:
     assert eq_span(np.vstack((code.Hz, code.Lz)), z)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 @pytest.mark.parametrize("code", ["steane_code", "css_4_2_2_code", "css_6_2_2_code"])
 def test_depth_optimal_prep_consistent(code: CSSCode, request) -> None:  # type: ignore[no-untyped-def]
     """Check that depth_optimal_prep_circuit returns a valid circuit with the correct stabilizers."""
@@ -155,7 +155,7 @@ def test_depth_optimal_prep_consistent(code: CSSCode, request) -> None:  # type:
     assert eq_span(np.vstack((code.Hz, code.Lz)), z)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 @pytest.mark.parametrize("code", ["steane_code", "css_4_2_2_code", "css_6_2_2_code"])
 def test_plus_state_gate_optimal(code: CSSCode, request) -> None:  # type: ignore[no-untyped-def]
     """Test synthesis of the plus state."""
@@ -223,7 +223,7 @@ def test_plus_state_heuristic(code: CSSCode, request) -> None:  # type: ignore[n
         assert not np.array_equal(z, x_zero)
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_optimal_steane_verification_circuit(steane_code_sp: StatePrepCircuit) -> None:
     """Test that the optimal verification circuit for the Steane code is correct."""
     circ = steane_code_sp
@@ -277,7 +277,7 @@ def test_heuristic_steane_verification_circuit(steane_code_sp: StatePrepCircuit)
     assert circ_ver.depth() == np.sum(ver_stabs) + circ.circ.depth() + 1  # 1 for the measurement
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_not_full_ft_opt_cc5(color_code_d5_sp: StatePrepCircuit) -> None:
     """Test that the optimal verification is also correct for higher distance.
 
@@ -351,7 +351,7 @@ def test_not_full_ft_heuristic_cc5(color_code_d5_sp: StatePrepCircuit) -> None:
     assert circ_ver.num_nonlocal_gates() == n_cnots + circ.circ.num_nonlocal_gates()
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_full_ft_opt_cc5(color_code_d5_sp: StatePrepCircuit) -> None:
     """Test that the optimal verification is also correct for higher distance.
 
@@ -379,7 +379,7 @@ def test_full_ft_heuristic_cc5(color_code_d5_sp: StatePrepCircuit) -> None:
     assert circ_ver_full_ft.depth() > circ_ver_x_ft.depth()
 
 
-@pytest.mark.skipif(os.environ.get("CI", False) and sys.platform == "win32", reason="Too slow for CI on Windows")
+@pytest.mark.skipif(os.getenv("CI") is not None and sys.platform == "win32", reason="Too slow for CI on Windows")
 def test_error_detection_code() -> None:
     """Test that different circuits are obtained when using an error detection code."""
     code = CSSCode.from_code_name("carbon")
diff --git a/uv.lock b/uv.lock
index 33ccdccf..ca544de7 100644
--- a/uv.lock
+++ b/uv.lock
@@ -56,14 +56,11 @@ wheels = [
 
 [[package]]
 name = "asttokens"
-version = "2.4.1"
+version = "3.0.0"
 source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "six" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/45/1d/f03bcb60c4a3212e15f99a56085d93093a497718adf828d050b9d675da81/asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0", size = 62284 }
+sdist = { url = "https://files.pythonhosted.org/packages/4a/e7/82da0a03e7ba5141f05cce0d302e6eed121ae055e0456ca228bf693984bc/asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7", size = 61978 }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/45/86/4736ac618d82a20d87d2f92ae19441ebc7ac9e7a581d7e58bbe79233b24a/asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24", size = 27764 },
+    { url = "https://files.pythonhosted.org/packages/25/8a/c46dcc25341b5bce5472c718902eb3d38600a903b14fa6aeecef3f21a46f/asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2", size = 26918 },
 ]
 
 [[package]]
@@ -402,71 +399,71 @@ wheels = [
 
 [[package]]
 name = "coverage"
-version = "7.6.7"
-source = { registry = "https://pypi.org/simple" }
-sdist = { url = "https://files.pythonhosted.org/packages/bf/68/26895f8b068e384b1ec9ab122565b913b735e6b4c618b3d265a280607edc/coverage-7.6.7.tar.gz", hash = "sha256:d79d4826e41441c9a118ff045e4bccb9fdbdcb1d02413e7ea6eb5c87b5439d24", size = 799938 }
-wheels = [
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-    { url = "https://files.pythonhosted.org/packages/f0/69/7dfd65f0e284617f72d974f6dfedc7bc16f86172e5bc6ebc8b63430263f3/coverage-7.6.7-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c973b2fe4dc445cb865ab369df7521df9c27bf40715c837a113edaa2aa9faf45", size = 207307 },
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