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bioconda package #1

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DrYak opened this issue Feb 4, 2021 · 2 comments
Open

bioconda package #1

DrYak opened this issue Feb 4, 2021 · 2 comments
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enhancement New feature or request

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@DrYak
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DrYak commented Feb 4, 2021

we need to make a bioconda package

our smallegenomeutility package is a good example.

@DrYak DrYak assigned DrYak and dr-david and unassigned DrYak Feb 4, 2021
@DrYak DrYak added the enhancement New feature or request label Feb 4, 2021
@DrYak DrYak self-assigned this Feb 4, 2021
@pvanheus
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@DrYak a bioconda package now exists. It is based on the version 0.1 tag / release and the dev branch of cojac is now substantially ahead of that release. What are your plans for publishing another release?

@DrYak
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DrYak commented Dec 30, 2021

@pvanheus : the main blocker was a hard-codec table in cooc-colourmut. It's fixed by now with a new (preliminary) yaml that can store a description of the requested amplicons (based on the voc YAML and BED amplicons) that can be passed into colourmut or fed back into cooc-mutbamscan.
So we'll move to packaging 0.2 on bioconda (and @kpj will also release a proper pip package).
But for now I am (finally) taking some (much needed) days off, so we kindly ask you for patience until after new year. 😅

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