diff --git a/workflow/envs/viloca.yaml b/workflow/envs/viloca.yaml index 51aacd4c..26434d02 100644 --- a/workflow/envs/viloca.yaml +++ b/workflow/envs/viloca.yaml @@ -7,5 +7,4 @@ dependencies: - python=3.10.4 - pip - pip: - - pandas - git+https://github.com/cbg-ethz/VILOCA@master diff --git a/workflow/schemas/config_schema.json b/workflow/schemas/config_schema.json index a0bb2c6d..8db21ae7 100644 --- a/workflow/schemas/config_schema.json +++ b/workflow/schemas/config_schema.json @@ -1225,12 +1225,13 @@ "mode": { "type": "string", "default": "use_quality_scores", + "enum": ["shorah","learn_error_params","use_quality_scores"], "description": "Mode in which to run VILOCA: shorah, learn_error_params, use_quality_scores. If quality scores are available, we recommend this option" }, "extra": { "type": "string", "default": "", - "description": "Pass additional options to run `lofreq call`" + "description": "Pass additional options to run `viloca`" } }, "default": {},