From 59386c7762847e01d0cba1be2c47dc7ccc67d783 Mon Sep 17 00:00:00 2001 From: Ivan Blagoev Topolsky Date: Fri, 7 Jun 2024 17:39:05 +0200 Subject: [PATCH] Linting --- workflow/rules/snv.smk | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/workflow/rules/snv.smk b/workflow/rules/snv.smk index 9572cad9..ca00df27 100644 --- a/workflow/rules/snv.smk +++ b/workflow/rules/snv.smk @@ -299,7 +299,8 @@ rule paired_end_read_merger: cohortdir("cohort_consensus.fasta") if config.viloca["consensus"] else reference_file - )+".fai", + ) + + ".fai", output: fname_bam_merged="{dataset}/alignment/REF_aln.merged.bam", fname_sam_merged=temp_with_prefix("{dataset}/alignment/REF_aln.merged.sam"),