diff --git a/CTC_SCITE/README.md b/CTC_SCITE/README.md index 978adaf..9c99dd5 100644 --- a/CTC_SCITE/README.md +++ b/CTC_SCITE/README.md @@ -22,7 +22,7 @@ allowing us to the the mixed and assess clonality of the cell clusters. --------------- -**CTC-SCITE** is freely available under a GPL3 license at http:///CTC-SCITE +**CTC-SCITE** is freely available under a GPL3 license at http://CTC-SCITE ## Getting started @@ -42,9 +42,11 @@ cd CTC-SCITE make ``` -Assuming the sample data file Br16.txt and annotation file Br16_samples_nodeDescription.tsv is located in the same folder, **CTC-SCITE** can then be executed as follows -./CTC-SCITE -i Br16.txt -samples Br16_samples_nodeDescription.tsv -r 1 -l 1000 -g 1 -e 0.1 -p 1 -o test +Assuming the sample data file Br16.txt and annotation file Br16_samples_nodeDescription.tsv is located in the same folder, **CTC-SCITE** can then be executed as follows: +```bash +./CTC-SCITE -i Br16.txt -samples Br16_samples_nodeDescription.tsv -r 1 -l 1000 -g 1 -e 0.1 -p 1 -o test +``` ## Input Files ---------------