Error: No such option: --per_sink_feature_assignments

[claireewilliams]

Hello!

I have been using ST2 to calculate sources for each of my sink samples and it's been great. However, I wanted to access the output of each feature's contribution with the --per_sink_feature_assignments flag, but I'm getting this error:
Error: No such option: --per_sink_feature_assignments

it's also not listed under the --help flag.

Is the --per_sink_feature_assignments flag still functional? Is there another option?

Thanks!

[KMKemp]

I was having the same issue. Did you see this response?
#101 (comment)

I was able to use the --per_sink_feature_assignments option after the following re-installation:

conda create -n st2 -c biocore python=3.6 numpy scipy scikit-bio biom-format h5py hdf5 seaborn
conda activate st2
pip install https://github.com/biota/sourcetracker2/archive/master.zip

This command worked with tiny_test data
sourcetracker2 -i otu_table.txt -m map.txt -o example5/ --jobs 5 --per_sink_feature_assignment

[claireewilliams]

Thanks so much!!! I appreciate it, @KMKemp