ci.yml

name: Test build

on:
  pull_request:
    branches: ["main"]
  push:
    branches: ["main"]

jobs:
  build-q2-hello-world:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-13]

    steps:
    - name: checkout source
      uses: actions/checkout@v4

    - name: set up python 3.11
      uses: actions/setup-python@v4
      with:
        python-version: 3.11

    - name: install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -q cookiecutter
        pip install -q flake8
        pip install -q https://github.com/qiime2/q2lint/archive/master.zip

    - name: build plugin from default template
      run: |
        git config --global user.email "q2dev@example.com"
        git config --global user.name "A QIIME 2 Plugin Developer"
        cookiecutter . --no-input

    - name: Set up Conda
      uses: conda-incubator/setup-miniconda@v3
      with:
        # to-do: remove hard-coding of version
        activate-environment: q2-hello-world-qiime2-tiny-2024.5
        environment-file: q2-hello-world/environments/q2-hello-world-qiime2-tiny-2024.5.yml
        auto-activate-base: false

    - name: Install plugin
      shell: bash -l {0}
      run: |
        cd q2-hello-world
        make install

    - name: Call --help on plugin
      shell: bash -l {0}
      run: |
        qiime hello-world --help

    - name: Test plugin
      shell: bash -l {0}
      run: |
        cd q2-hello-world
        make test

    - name: Lint plugin
      shell: bash -l {0}
      run: |
        cd q2-hello-world
        flake8
        q2lint