From c330832cb17a1830bd1c855999137bfb2ba46218 Mon Sep 17 00:00:00 2001 From: Katie Stahl Date: Wed, 25 Sep 2024 14:58:09 -0400 Subject: [PATCH] update fusor version with error message fixes --- requirements.txt | 30 +++++++++++++++++++++++++++--- server/pyproject.toml | 2 +- 2 files changed, 28 insertions(+), 4 deletions(-) diff --git a/requirements.txt b/requirements.txt index 0c7c0fdf..310c4d88 100644 --- a/requirements.txt +++ b/requirements.txt @@ -8,46 +8,69 @@ asyncpg==0.29.0 attrs==24.2.0 biocommons.seqrepo==0.6.9 bioutils==0.5.8.post1 -boto3==1.35.4 -botocore==1.35.4 +black==24.8.0 +boto3==1.35.3 +botocore==1.35.3 canonicaljson==2.0.0 certifi==2024.7.4 +cfgv==3.4.0 charset-normalizer==3.3.2 click==8.1.7 coloredlogs==15.0.1 configparser==7.1.0 cool_seq_tool==0.7.0 +coverage==7.6.1 decorator==5.1.1 +distlib==0.3.8 executing==2.0.1 fastapi==0.112.1 -fusor==0.4.2 +filelock==3.15.4 +fusor==0.4.3 ga4gh.vrs==2.0.0a10 gene-normalizer==0.4.0 h11==0.14.0 hgvs==1.5.4 +httpcore==1.0.5 +httpx==0.27.0 humanfriendly==10.0 +identify==2.6.0 idna==3.7 importlib_metadata==8.4.0 +iniconfig==2.0.0 ipython==8.26.0 jedi==0.19.1 Jinja2==3.1.4 jmespath==1.0.1 MarkupSafe==2.1.5 matplotlib-inline==0.1.7 +mypy-extensions==1.0.0 +nodeenv==1.9.1 +packaging==24.1 Parsley==1.3 parso==0.8.4 +pathspec==0.12.1 pexpect==4.9.0 +platformdirs==4.2.2 +pluggy==1.5.0 polars==1.5.0 +pre-commit==3.8.0 prompt_toolkit==3.0.47 psycopg2==2.9.9 +psycopg2-binary==2.9.9 ptyprocess==0.7.0 pure_eval==0.2.3 pydantic==2.4.2 +pydantic-to-typescript2==1.0.4 pydantic_core==2.10.1 Pygments==2.18.0 pysam==0.22.1 +pytest==8.3.2 +pytest-asyncio==0.24.0 +pytest-cov==5.0.0 python-dateutil==2.9.0.post0 +PyYAML==6.0.2 requests==2.32.3 +ruff==0.5.0 s3transfer==0.10.2 six==1.16.0 sniffio==1.3.1 @@ -60,6 +83,7 @@ traitlets==5.14.3 typing_extensions==4.12.2 urllib3==1.26.19 uvicorn==0.30.6 +virtualenv==20.26.3 wags_tails==0.1.4 wcwidth==0.2.13 yoyo-migrations==8.2.0 diff --git a/server/pyproject.toml b/server/pyproject.toml index 80bda160..60b7021b 100644 --- a/server/pyproject.toml +++ b/server/pyproject.toml @@ -28,7 +28,7 @@ dependencies = [ "click", "boto3", "botocore", - "fusor ~= 0.4.2", + "fusor ~= 0.4.3", "cool-seq-tool ~= 0.7.0", "pydantic == 2.4.2", # validation errors with more recent versions, so don't remove this specific pin "gene-normalizer ~= 0.4.0",