From 39a9a838a64837cda48e09966e51525ad4f21f73 Mon Sep 17 00:00:00 2001
From: James Stevenson <james.stevenson@nationwidechildrens.org>
Date: Tue, 16 Jul 2024 09:12:56 -0400
Subject: [PATCH 1/2] build: fix setuptools-scm build (#289)

---
 server/pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/server/pyproject.toml b/server/pyproject.toml
index c9456bda..c7a67021 100644
--- a/server/pyproject.toml
+++ b/server/pyproject.toml
@@ -21,7 +21,6 @@ classifiers = [
 ]
 requires-python = ">=3.10"
 description = "Curation tool for gene fusions"
-license = {file = "../LICENSE"}
 dependencies = [
     "fastapi >= 0.72.0",
     "aiofiles",
@@ -64,6 +63,7 @@ build-backend = "setuptools.build_meta"
 where = ["src"]
 
 [tool.setuptools_scm]
+root = "../."
 
 [tool.pytest.ini_options]
 addopts = "--cov=src --cov-report term-missing"

From c00194ffd639f3d1c78fd0ca62e1b20a8a14a239 Mon Sep 17 00:00:00 2001
From: James Stevenson <james.stevenson@nationwidechildrens.org>
Date: Mon, 5 Aug 2024 11:18:37 -0400
Subject: [PATCH 2/2] refactor: address config deprecation (#299)

---
 server/src/curfu/schemas.py | 12 +++---------
 1 file changed, 3 insertions(+), 9 deletions(-)

diff --git a/server/src/curfu/schemas.py b/server/src/curfu/schemas.py
index 73cf5996..5976d939 100644
--- a/server/src/curfu/schemas.py
+++ b/server/src/curfu/schemas.py
@@ -19,7 +19,7 @@
     UnknownGeneElement,
 )
 from ga4gh.vrsatile.pydantic.vrsatile_models import CURIE
-from pydantic import BaseModel, Extra, Field, StrictInt, StrictStr, validator
+from pydantic import BaseModel, ConfigDict, Field, StrictInt, StrictStr, validator
 
 ResponseWarnings = list[StrictStr] | None
 
@@ -88,10 +88,7 @@ class ClientFunctionalDomain(FunctionalDomain):
 
     domain_id: str
 
-    class Config:
-        """Configure class."""
-
-        extra = Extra.forbid
+    model_config = ConfigDict(extra="forbid")
 
 
 class ClientRegulatoryElement(RegulatoryElement):
@@ -106,10 +103,7 @@ class Response(BaseModel):
 
     warnings: ResponseWarnings
 
-    class Config:
-        """Configure class"""
-
-        extra = Extra.forbid
+    model_config = ConfigDict(extra="forbid")
 
 
 class GeneElementResponse(Response):