Merge branch 'hotfix/2.0.3'

CHANGES.md

@@ -1,5 +1,7 @@
 # CHANGES
 
+## 2.0.3
+* Added utf-8 default encoding to read json, fixes text encoding issue in docker build
 ## 2.0.2
 * renamed test file to avoid ignored by gitignore file
 ## 2.0.1

pyCRISPRcleanR/config/ref_genes/dna_replication.txt

@@ -0,0 +1,15 @@
+MCM2
+MCM3
+MCM5
+MCM7
+POLA1
+POLD1
+POLD2
+POLD4
+POLE2
+RFC3
+RFC4
+RPA1
+RPA2
+RPA3
+RPA4

pyCRISPRcleanR/config/ref_genes/essential.txt

@@ -0,0 +1,360 @@
+ACTL6A
+ACTR6
+ALYREF
+ANAPC4
+ANAPC5
+AP2S1
+AQR
+ARCN1
+ARL5B
+ATP6V0D1
+ATXN7
+BIRC6
+BOP1
+BPTF
+BRIX1
+C11orf24
+C12orf66
+C14orf166
+C19orf43
+CAP1
+CCNG1
+CCNK
+CCT3
+CCT4
+CCT5
+CCT6A
+CCT7
+CCT8
+CDC40
+CDC5L
+CDK17
+CHD4
+CHMP2A
+CLTC
+COPA
+COPB1
+COPB2
+COPE
+COPS2
+COPS4
+COPS6
+COPS8
+COPZ1
+COX10
+CPSF2
+CPSF3
+CSE1L
+CTDNEP1
+DARS
+DDB1
+DDX18
+DDX21
+DDX46
+DDX49
+DDX51
+DDX54
+DKC1
+DLG5
+DNAJC1
+DNM2
+DNTTIP2
+DYNC1H1
+DYNC1I2
+EEF2
+EFTUD2
+EIF1AX
+EIF2B2
+EIF2B3
+EIF2B4
+EIF2S2
+EIF3A
+EIF3B
+EIF3C
+EIF3D
+EIF3E
+EIF3F
+EIF3G
+EIF3H
+EIF3I
+EIF4A3
+EIF4E
+EIF5B
+EIF6
+ERAP1
+ERH
+ETF1
+EXOSC10
+FDPS
+FLAD1
+FTSJ3
+GABPA
+GAPDH
+GAR1
+GEMIN2
+GLYR1
+GMPS
+GNL3
+GTF3C4
+HAUS1
+HAUS7
+HEATR1
+HNRNPC
+HNRNPK
+HNRNPL
+HNRNPM
+HNRNPU
+HPS5
+HSPA9
+HSPB11
+HSPE1
+IARS2
+ICK
+IMP4
+IMPAD1
+INCENP
+INTS9
+IQGAP1
+ISCU
+JMJD1C
+KARS
+KPNB1
+KRAS
+LARS2
+LIAS
+LSM4
+LSM6
+LUC7L3
+LZIC
+MAPK6
+MAPKAP1
+MED12
+MED14
+MED30
+MMAB
+MRPS31
+MSANTD3
+MTFMT
+MTX1
+NAA10
+NAA38
+NACA
+NAPA
+NAPG
+NCBP1
+NEDD8
+NHP2L1
+NPTN
+NT5C2
+NUDT21
+NUP133
+NUP205
+NUP54
+NUP93
+NUP98
+NUPL1
+NUTF2
+NXF1
+OPA1
+PABPN1
+PAFAH1B1
+PAPOLA
+PARN
+PCBP1
+PCBP2
+PDE8A
+PDHA1
+PFDN2
+PFN1
+PHB
+PHB2
+PHF16
+PHF5A
+PHYH
+PLAGL2
+POLR1B
+POLR2D
+POLR2F
+POLR2I
+POP5
+PPIE
+PPP2R1A
+PPP2R2D
+PPP5C
+PREB
+PRKAA1
+PRKAB2
+PRKDC
+PRPF18
+PRPF19
+PRPF3
+PRPF31
+PRPF38A
+PRPF8
+PRUNE
+PSMA1
+PSMA2
+PSMA3
+PSMA4
+PSMA6
+PSMB2
+PSMB3
+PSMB5
+PSMB6
+PSMC1
+PSMC2
+PSMC3
+PSMC4
+PSMD1
+PSMD11
+PSMD12
+PSMD13
+PSMD2
+PSMD4
+PSMD7
+QARS
+RAN
+RANBP2
+RBM14
+RBM17
+RBM22
+RBM25
+RBMX
+RILPL2
+RNF139
+RPA1
+RPA2
+RPL10
+RPL10A
+RPL11
+RPL12
+RPL13
+RPL13A
+RPL14
+RPL18
+RPL18A
+RPL19
+RPL23A
+RPL24
+RPL26
+RPL27
+RPL3
+RPL30
+RPL31
+RPL32
+RPL34
+RPL35
+RPL35A
+RPL36
+RPL37
+RPL37A
+RPL38
+RPL4
+RPL5
+RPL6
+RPL7
+RPL7A
+RPLP0
+RPLP2
+RPN2
+RPP38
+RPP40
+RPS11
+RPS12
+RPS13
+RPS14
+RPS15
+RPS15A
+RPS17
+RPS18
+RPS19
+RPS20
+RPS24
+RPS25
+RPS26
+RPS27A
+RPS3
+RPS3A
+RPS4X
+RPS5
+RPS6
+RPS7
+RPS8
+RPS9
+RPSA
+RRM1
+RRM2B
+RTF1
+RUVBL1
+RUVBL2
+SARS
+SDAD1
+SF3A1
+SF3A2
+SF3B1
+SF3B2
+SF3B3
+SF3B4
+SF3B5
+SFPQ
+SHFM1
+SKIV2L2
+SLC25A43
+SMC1A
+SMC3
+SNRNP200
+SNRNP27
+SNRPB
+SNRPC
+SNRPD1
+SNRPD2
+SNW1
+SON
+SRBD1
+SRCAP
+SRFBP1
+SRRT
+SRSF1
+SRSF3
+SSR1
+STRN
+SUPT5H
+SUPT6H
+SUPV3L1
+TBC1D25
+TBCE
+TCERG1
+TDRD3
+TFIP11
+THOP1
+TIMM10
+TOMM40
+TPR
+TRRAP
+TSEN2
+TSTA3
+TUBA1B
+TUBB
+TUBGCP2
+U2AF1
+U2AF2
+UBA1
+UBB
+UBL4A
+USP39
+VCP
+VTA1
+WDR12
+WDR33
+WDR60
+WDR61
+XAB2
+XIAP
+XPO1
+YY1
+ZBTB48
+ZC3H13
+ZC3H18
+ZFR
+ZNF160
+ZNF207