From 983205c7206425a5932b02c78b4a54a86de84586 Mon Sep 17 00:00:00 2001 From: njbernstein Date: Wed, 30 Jun 2021 10:46:17 -0700 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 79af4b1..2546ef7 100644 --- a/README.md +++ b/README.md @@ -73,11 +73,11 @@ model_json example: Outputs: * `is_doublet.npy` np boolean array, true if a cell is a doublet, differs from `preds.npy` if `-e expected_number_of_doublets` parameter was used -* `vae.pt` scVI weights for vae -* `classifier.pt` scVI weights for classifier +* `vae` scVI directory for vae +* `classifier.pt` scVI directory for classifier * `latent.npy` latent embedding for each cell * `preds.npy` doublet predictions -* `softmax_scores.npy` updated softmax of doublet scores (see paper) +* `softmax_scores.npy` updated softmax of doublet scores (see paper), same as `no_update_softmax_scores.npy` now * `no_update_softmax_scores.npy` raw softmax of doublet scores * `logit_scores.npy` logit of doublet scores