You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Some cell profiles contain a large majority of reads mapping to a single gene (e.g. the Rn45s locus for low quality cells). These cells are usually filtered out during quality control, but in the event they persist in a dataset passed to scnym, they can lead to unstable training dynamics and failures to converge.
We should add simple quality control checks in .api.scnym_api that search for these cells in user provided datasets and throw a warning if they appear.
The text was updated successfully, but these errors were encountered:
Some cell profiles contain a large majority of reads mapping to a single gene (e.g. the
Rn45s
locus for low quality cells). These cells are usually filtered out during quality control, but in the event they persist in a dataset passed toscnym
, they can lead to unstable training dynamics and failures to converge.We should add simple quality control checks in
.api.scnym_api
that search for these cells in user provided datasets and throw a warning if they appear.The text was updated successfully, but these errors were encountered: