From 5994d56864c17fa2b33c9688c33b69574a83aeba Mon Sep 17 00:00:00 2001
From: Sean Hackett <sean@calicolabs.com>
Date: Mon, 22 Apr 2024 11:00:35 -0700
Subject: [PATCH] passing R CMD check locally

---
 NAMESPACE                           |  1 +
 R/data_classes.R                    |  2 +-
 man/reform_tidy_omic.Rd             | 28 ++++++++++++++++++++++++++++
 tests/testthat/test-dim_reduction.R |  1 -
 4 files changed, 30 insertions(+), 2 deletions(-)
 create mode 100644 man/reform_tidy_omic.Rd

diff --git a/NAMESPACE b/NAMESPACE
index a3e96c3..a94cc12 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -36,6 +36,7 @@ export(plot_heatmap)
 export(plot_univariate)
 export(plotsaverInput)
 export(plotsaverServer)
+export(reform_tidy_omic)
 export(remove_missing_values)
 export(shiny_filter_test)
 export(shiny_ggbiv_test)
diff --git a/R/data_classes.R b/R/data_classes.R
index 93c3aac..f17ce37 100644
--- a/R/data_classes.R
+++ b/R/data_classes.R
@@ -1026,7 +1026,7 @@ infer_tomic_table_type <- function(tomic, tomic_table) {
 #'
 #' @param tidy_data A tibble containing measurements along with sample metadata. This
 #'   table can be obtained as the "data" attribute from a romic "tidy_omic" object.
-#' @inheritParams romic::check_design
+#' @inheritParams check_design
 #'
 #' @details This is handy for passing data and metadata through approaches like parsnip
 #' which expect data to be formatted as a data.frame
diff --git a/man/reform_tidy_omic.Rd b/man/reform_tidy_omic.Rd
new file mode 100644
index 0000000..f6cc003
--- /dev/null
+++ b/man/reform_tidy_omic.Rd
@@ -0,0 +1,28 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/data_classes.R
+\name{reform_tidy_omic}
+\alias{reform_tidy_omic}
+\title{Reform Tidy Omic}
+\usage{
+reform_tidy_omic(tidy_data, tomic_design)
+}
+\arguments{
+\item{tidy_data}{A tibble containing measurements along with sample metadata. This
+table can be obtained as the "data" attribute from a romic "tidy_omic" object.}
+
+\item{tomic_design}{a list with named attributes describing feature,
+sample, and measurement variables.}
+}
+\description{
+This function recreates a `tidy_omic` object from the "data" and "design"
+attributes of this object.
+}
+\details{
+This is handy for passing data and metadata through approaches like parsnip
+which expect data to be formatted as a data.frame
+}
+\examples{
+tidy_data <- romic::brauer_2008_tidy$data
+reform_tidy_omic(tidy_data, romic::brauer_2008_tidy$design)
+
+}
diff --git a/tests/testthat/test-dim_reduction.R b/tests/testthat/test-dim_reduction.R
index 1f65eac..f77db3b 100644
--- a/tests/testthat/test-dim_reduction.R
+++ b/tests/testthat/test-dim_reduction.R
@@ -40,5 +40,4 @@ test_that("Matrices keys are reconstructed with appropriate classes", {
     expect_s3_class(imputed_tomic, "triple_omic")
   }
 
-
 })