_pkgdown.yml

reference:
- title: "Core Data Structures"
  desc: "Represent high-dimensional datasets as features, samples and measurements"
- contents:
  - create_tidy_omic
  - check_tidy_omic
  - create_triple_omic
  - check_triple_omic
- subtitle: "Converters"
- contents:
  - get_tomic_table
  - tomic_to
  - check_tomic
  - tidy_to_triple
  - triple_to_tidy
  - convert_wide_to_tidy_omic
- subtitle: "Exports"
- contents:
  - starts_with("export")
- title: "Transformation"
- subtitle: "Filtering"
- contents:
  - filter_tomic
  - reconcile_triple_omic
  - remove_missing_values
- subtitle: "Mutates"
- contents:
  - update_tomic
  - update_tidy_omic
  - center_tomic
  - add_pcs
  - starts_with("sort")
  - impute_missing_values
- title: "Shiny Apps"
- subtitle: "Full Apps"
- contents:
  - starts_with("app")
- subtitle: "Modules (app components)"
- contents:
  - ends_with("Input")
  - ends_with("Output")
  - ends_with("Server")
- subtitle: "Module Examples"
- contents:
  - starts_with("shiny")
- title: "Static Visualizations"
  desc: "Plotting functions for tomic datasets"
- contents:
  - starts_with("plot")
  - format_names_for_plotting
  - downsample_heatmap
- title: "Example Data"
  desc: "Datasets bundled with romic"
- contents:
  - brauer_2008
- subtitle: "Utils"
- contents:
  - get_design_tbl
  - tomic_sort_status
- title: "Internal Functions"
- subtitle: "Meta"
- contents:
  - romic
  - prepare_example_datasets
- subtitle: "Utils"
- contents:
  - hclust_order
  - infer_tomic_table_type
  - try_brushedPoints
  - var_partial_match
template:
  params:
    bootswatch: flatly