This repository contains shell scripts, notebooks, commands, etc. related to the analyses performed in the Borzoi paper, including data processing, model training, and evaluation. These analyses invoke functionality from the borzoi, baskerville, and westminster repositories. Visit those links for general install instructions.
Tip: When executing .sh scripts found in this directory structure, we recommend first navigating in the terminal to the 'borzoi/examples' directory from the borzoi repository, since all file paths are relative to this root directory.
For example, assuming borzoi-paper and borzoi are cloned to your home folder, issue commands of the form:
conda activate <my_conda_env>
cd ~/borzoi/examples
. ~/borzoi-paper/analysis/<some_folder>/<some_script>.shContact drk (at) @calicolabs.com or jlinder (at) @calicolabs.com for questions.