From 877bdb7ca401f943f7db434108ae6ebec98a7097 Mon Sep 17 00:00:00 2001 From: lruizcalico Date: Mon, 17 Jun 2024 16:28:34 -0700 Subject: [PATCH] change pybedtools --- pyproject.toml | 2 +- tests/test_snp.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index ed4bec0..a8f08d4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ dependencies = [ "numpy~=1.24.3", "pandas~=1.5.3", "pybigwig~=0.3.18", - "pybedtools~=0.9.0", + "pybedtools~=0.10.0", "pysam~=0.22.0", "qnorm~=0.8.1", "seaborn~=0.12.2", diff --git a/tests/test_snp.py b/tests/test_snp.py index 68a0a9b..f4cff69 100755 --- a/tests/test_snp.py +++ b/tests/test_snp.py @@ -6,7 +6,7 @@ from baskerville.dataset import targets_prep_strand -stat_keys = ["logSUM", "logD2"] +stat_keys = ["logSUM", "logD2", "logSAD"] fasta_file = "tests/data/hg38_1m.fa.gz" targets_file = "tests/data/tiny/hg38/targets.txt" params_file = "tests/data/eval/params.json"