From 0c8021bc119d5a3470e0c4e7712d89e9558ee1cc Mon Sep 17 00:00:00 2001 From: lruizcalico Date: Tue, 9 Apr 2024 13:05:59 -0700 Subject: [PATCH] add strand_transform to hound_ism_bed line 278 fix missing arg --- src/baskerville/scripts/hound_ism_bed.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/baskerville/scripts/hound_ism_bed.py b/src/baskerville/scripts/hound_ism_bed.py index 7449c18..fea5f12 100755 --- a/src/baskerville/scripts/hound_ism_bed.py +++ b/src/baskerville/scripts/hound_ism_bed.py @@ -276,7 +276,7 @@ def main(): alt_preds = np.array(alt_preds) ism_scores = snps.compute_scores( - ref_preds, alt_preds, options.snp_stats + ref_preds, alt_preds, options.snp_stats, strand_transform ) for snp_stat in options.snp_stats: scores_h5[snp_stat][si, mi - mut_start, ni] = ism_scores[