From 80d797bf8febcb900b5d928476daa0d2e2041c47 Mon Sep 17 00:00:00 2001 From: David Kelley Date: Mon, 22 Apr 2019 13:29:20 -0700 Subject: [PATCH] vcf bed bug --- bin/basenji_sat_bed.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/bin/basenji_sat_bed.py b/bin/basenji_sat_bed.py index a64936bd..a8a55dfe 100755 --- a/bin/basenji_sat_bed.py +++ b/bin/basenji_sat_bed.py @@ -77,14 +77,14 @@ def main(): # single worker params_file = args[0] model_file = args[1] - vcf_file = args[2] + bed_file = args[2] elif len(args) == 5: # multi worker options_pkl_file = args[0] params_file = args[1] model_file = args[2] - vcf_file = args[3] + bed_file = args[3] worker_index = int(args[4]) # load options @@ -96,7 +96,7 @@ def main(): options.out_dir = '%s/job%d' % (options.out_dir, worker_index) else: - parser.error('Must provide parameters and model files and QTL VCF file') + parser.error('Must provide parameters and model files and QTL BED file') if not os.path.isdir(options.out_dir): os.mkdir(options.out_dir)