From 11c767a63bd44e1f26818b2063b3107184bfcd09 Mon Sep 17 00:00:00 2001 From: schmoelder Date: Thu, 24 Oct 2024 08:21:40 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20master=20from=20@=20cadet/CADE?= =?UTF-8?q?T-Website@34444dc9c07c97ff415ebaa770647139e53b86e3=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CADET-Match/master/.buildinfo | 2 +- .../master/.doctrees/cli/examples.doctree | Bin 9435 -> 9435 bytes .../master/.doctrees/cli/index.doctree | Bin 11640 -> 11640 bytes .../configuration/basic_config.doctree | Bin 12372 -> 12372 bytes .../.doctrees/configuration/error.doctree | Bin 16419 -> 16419 bytes .../configuration/experiments.doctree | Bin 11625 -> 11625 bytes .../.doctrees/configuration/graphing.doctree | Bin 7220 -> 7220 bytes .../.doctrees/configuration/index.doctree | Bin 7299 -> 7299 bytes .../.doctrees/configuration/misc.doctree | Bin 11833 -> 11833 bytes 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bytes v4.4.0/.doctrees/simulation/index.doctree | Bin 63769 -> 63769 bytes v4.4.0/.doctrees/zbibliography.doctree | Bin 4742 -> 4742 bytes 601 files changed, 34 insertions(+), 39 deletions(-) diff --git a/CADET-Match/master/.buildinfo b/CADET-Match/master/.buildinfo index 1e06f03c5..e3e02283a 100644 --- a/CADET-Match/master/.buildinfo +++ b/CADET-Match/master/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file records the configuration used when building these files. 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When planning to extend or contribute to CADET-Core, please adhere to our notation style and research software engineering (RSE) best practices. For detailed guidance, you can e.g. refer to the `RSE guidelines `_. diff --git a/master/_sources/index.rst.txt b/master/_sources/index.rst.txt index 789dceb75..485037b97 100644 --- a/master/_sources/index.rst.txt +++ b/master/_sources/index.rst.txt @@ -4,11 +4,11 @@ | -.. image:: https://img.shields.io/github/release/modsim/cadet.svg - :target: https://github.com/modsim/CADET/releases +.. image:: https://img.shields.io/github/release/cadet/cadet-core.svg + :target: https://github.com/cadet/cadet-core/releases -.. image:: https://github.com/modsim/CADET/actions/workflows/ci.yml/badge.svg?branch=master - :target: https://github.com/modsim/CADET/actions/workflows/ci.yml?query=branch%3Amaster +.. image:: https://github.com/cadet/cadet-core/actions/workflows/ci.yml/badge.svg?branch=master + :target: https://github.com/cadet/cadet-core/actions/workflows/ci.yml?query=branch%3Amaster .. image:: https://anaconda.org/conda-forge/cadet/badges/downloads.svg :target: https://anaconda.org/conda-forge/cadet @@ -27,7 +27,7 @@ CADET can handle arbitrary sequences and networks of unit operations, including The resulting models are solved with state-of-the-art mathematical algorithms and scientific computing techniques. - **Forum:** https://forum.cadet-web.de -- **Source:** https://github.com/modsim/cadet +- **Source:** https://github.com/cadet/cadet-core - **Demo:** http://cadet-web.de - **Newsletter:** https://cadet-web.de/newsletter/ @@ -68,7 +68,7 @@ For non-developers, it is recommended to upgrade from release to release instead Bugs ---- -Please report any bugs that you find `here `_. Or, even better, fork the repository on `GitHub `_ and create a pull request (PR) with the fix. +Please report any bugs that you find `here `_. Or, even better, fork the repository on `GitHub `_ and create a pull request (PR) with the fix. Donations --------- @@ -79,8 +79,6 @@ Donations Citing ------ -Citing ------------- The development of CADET has been a collaborative effort, with multiple dedicated individuals contributing their expertise to create a powerful and versatile open-source software tool. Countless hours of hard work have been invested to provide the scientific community with a valuable resource. As an open-source project, CADET relies on the support and recognition from users and researchers to thrive. @@ -107,7 +105,7 @@ Selected applications that demonstrate the capabilities and use-cases of CADET a Acknowledgments --------------- -Please refer to the `list of contributors `_ who helped building and funding this project. +Please refer to the `list of contributors `_ who helped building and funding this project. .. toctree:: diff --git a/master/developer_guide/index.html b/master/developer_guide/index.html index c9469a01c..15467a68f 100644 --- a/master/developer_guide/index.html +++ b/master/developer_guide/index.html @@ -107,7 +107,7 @@

Branches

This developer guide is intended to help expand and maintain CADET-Core and is written to serve developers with diverse backgrounds.

If you find any gaps or have suggestions for improvement, your input is valuable in refining our documentation for better comprehension by all developers. -Please feel free to open an issue on GitHub or, even better, write a draft and create a pull request.

+Please feel free to open an issue on GitHub or, even better, write a draft and create a pull request.

When planning to extend or contribute to CADET-Core, please adhere to our notation style and research software engineering (RSE) best practices. For detailed guidance, you can e.g. refer to the RSE guidelines. Since some developers may be new to collaborative software development using Git and GitHub, we specifically recommend consulting the Git RSE guide.

diff --git a/master/getting_started/build_linux.html b/master/getting_started/build_linux.html index d3a6d7fac..7716d4263 100644 --- a/master/getting_started/build_linux.html +++ b/master/getting_started/build_linux.html @@ -135,7 +135,7 @@

LAPACK¶

Build CADET¶

    -

  • Clone the CADET source code git clone https://github.com/modsim/CADET.git CADET

    • +

  • Clone the CADET source code git clone https://github.com/cadet/cadet-core.git CADET

  • Create the directories CADET/build and CADET/install

  • Open a terminal and change to CADET/build

  • If using MKL, execute export MKLROOT=/opt/intel/mkl

    • diff --git a/master/getting_started/build_osx.html b/master/getting_started/build_osx.html index 2debeb9a9..8be39cee1 100644 --- a/master/getting_started/build_osx.html +++ b/master/getting_started/build_osx.html @@ -131,7 +131,7 @@

    LAPACK¶

    Build CADET¶

      -

    • Clone the CADET source code git clone https://github.com/modsim/CADET.git CADET

      • +

    • Clone the CADET source code git clone https://github.com/cadet/cadet-core.git CADET

    • Create the directories CADET/build and CADET/install

      diff --git a/master/getting_started/build_windows.html b/master/getting_started/build_windows.html index 5c6af9a78..648e76263 100644 --- a/master/getting_started/build_windows.html +++ b/master/getting_started/build_windows.html @@ -151,7 +151,7 @@

      Prepare CADET code

    • Clone the CADET source code into a CADET folder:

        -

      • git clone https://github.com/modsim/CADET.git CADET

        • +

      • git clone https://github.com/cadet/cadet-core.git CADET

    • Create the directories CADET\build and CADET\install

      • diff --git a/master/index.html b/master/index.html index dcaad3bd8..335ff8953 100644 --- a/master/index.html +++ b/master/index.html @@ -98,9 +98,9 @@

      Branches


      -      https://img.shields.io/github/release/modsim/cadet.svg +https://img.shields.io/github/release/cadet/cadet-core.svg -https://github.com/modsim/CADET/actions/workflows/ci.yml/badge.svg?branch=master +https://github.com/cadet/cadet-core/actions/workflows/ci.yml/badge.svg?branch=master https://anaconda.org/conda-forge/cadet/badges/downloads.svg @@ -118,7 +118,7 @@

      CADET¶ The resulting models are solved with state-of-the-art mathematical algorithms and scientific computing techniques.

      @@ -151,7 +151,7 @@

      Ongoing Development

      Bugs¶

      -

      Please report any bugs that you find here. Or, even better, fork the repository on GitHub and create a pull request (PR) with the fix.

      +

      Please report any bugs that you find here. Or, even better, fork the repository on GitHub and create a pull request (PR) with the fix.

      Donations¶

      @@ -159,9 +159,6 @@

      Donations

      Citing¶

      -

      -
      -

      Citing¶

      The development of CADET has been a collaborative effort, with multiple dedicated individuals contributing their expertise to create a powerful and versatile open-source software tool. Countless hours of hard work have been invested to provide the scientific community with a valuable resource. As an open-source project, CADET relies on the support and recognition from users and researchers to thrive. @@ -182,7 +179,7 @@

      Citing¶<

      Acknowledgments¶

      -

      Please refer to the list of contributors who helped building and funding this project.

      +

      Please refer to the list of contributors who helped building and funding this project.

      diff --git a/master/searchindex.js b/master/searchindex.js index a504ca283..017d9ac33 100644 --- a/master/searchindex.js +++ b/master/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"/output/coordinates/unit_XXX": [[48, "output-coordinates-unit-xxx"]], "0. Preliminary Steps": [[3, "preliminary-steps"]], "1. Setting Up the Model": [[3, "setting-up-the-model"], [18, "setting-up-the-model"]], "2. Setting up Time Sections and Connections": [[3, "setting-up-time-sections-and-connections"]], "3. Setting Up the Simulator and Running the Simulation": [[3, "setting-up-the-simulator-and-running-the-simulation"], [18, "setting-up-the-simulator-and-running-the-simulation"]], "4. Plotting the Results": [[3, "plotting-the-results"], [18, "plotting-the-results"]], "Acknowledgments": [[19, "acknowledgments"]], "Adaptivity": [[110, "adaptivity"]], "Adding tests for your model": [[7, "adding-tests-for-your-model"]], "Adsorption Model": [[3, "adsorption-model"], [18, "adsorption-model"]], "Algorithmic differentiation": [[6, "algorithmic-differentiation"]], "Batch chromatography": [[8, null]], "Bi Steric Mass Action": [[20, null], [70, null]], "Bibliography": [[111, null]], "Binding Model": [[6, "binding-model"]], "Binding model feature matrix": [[76, "binding-model-feature-matrix"]], "Binding models": [[26, null], [76, null]], "Bugs": [[19, "bugs"]], "Build CADET": [[13, "build-cadet"], [14, "build-cadet"]], "Build CADET from the command line": [[15, "build-cadet-from-the-command-line"]], "Build CADET in Visual Studio": [[15, "build-cadet-in-visual-studio"]], "Build dependencies": [[14, "build-dependencies"]], "Build for Linux": [[13, null]], "Build for MS Windows": 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