From 6603c06c1daae557c39bb8ac57248d15666440bd Mon Sep 17 00:00:00 2001
From: Jan Breuer <74359367+jbreue16@users.noreply.github.com>
Date: Tue, 8 Oct 2024 12:49:37 +0200
Subject: [PATCH 1/2] Add CI workflow

---
 .github/workflows/ci.yml         | 62 ++++++++++++++++++++++++++++++++
 include/io/FileIO.hpp            |  1 +
 include/io/ParameterProvider.hpp |  1 +
 3 files changed, 64 insertions(+)
 create mode 100644 .github/workflows/ci.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..9bad7f2
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,62 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v3
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y \
+          build-essential \
+          cmake \
+          libhdf5-dev \
+          libgmp-dev \
+          libmpfr-dev \
+          libmpc-dev \
+          libeigen3-dev;
+
+    - name: Download CADET-semi-analytic dependencies
+      run: |
+        # Download and build the required libraries if needed
+        # Note: Add commands here if any libraries need to be downloaded and built
+
+    - name: Create build directory
+      run: mkdir build && cd build
+
+    - name: Run CMake
+      working-directory: build
+      run: |
+        # Set environment variables for CMake to locate libraries
+        export GMP_ROOT=/usr/include
+        export MPFR_ROOT=/usr/include
+        export MPC_ROOT=/usr/include
+        export HDF5_ROOT=/usr/include
+        cmake -DCMAKE_INSTALL_PREFIX=install/ \
+              -DCMAKE_CXX_COMPILER=g++ \
+              -DCMAKE_C_COMPILER=gcc \
+              -DUSE_FADBAD=ON \
+              -DENABLE_TESTS=OFF \
+              ..
+
+    - name: Build
+      working-directory: build
+      run: make -j$(nproc)
+
+    - name: Install
+      working-directory: build
+      run: make install
+
+    - name: Verify installation
+      run: |
+        ./build/install/bin/chromatogram --version
diff --git a/include/io/FileIO.hpp b/include/io/FileIO.hpp
index 05f0e04..13f7184 100644
--- a/include/io/FileIO.hpp
+++ b/include/io/FileIO.hpp
@@ -17,6 +17,7 @@
 
 #include <string>
 #include <vector>
+#include <cstdint>
 
 #include "casemaCompilerInfo.hpp"
 
diff --git a/include/io/ParameterProvider.hpp b/include/io/ParameterProvider.hpp
index bfc6159..1bf5914 100644
--- a/include/io/ParameterProvider.hpp
+++ b/include/io/ParameterProvider.hpp
@@ -17,6 +17,7 @@
 
 #include <string>
 #include <vector>
+#include <cstdint>
 
 #include "casemaCompilerInfo.hpp"
 

From 364d0209ad8d44465c02985b9dbb2f9b2485e29e Mon Sep 17 00:00:00 2001
From: Jan Breuer <j.m.br@gmx.de>
Date: Thu, 17 Oct 2024 20:51:24 +0200
Subject: [PATCH 2/2] Update version info

---
 include/TclapUtils.hpp | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/include/TclapUtils.hpp b/include/TclapUtils.hpp
index 82880bd..f6fbc3a 100644
--- a/include/TclapUtils.hpp
+++ b/include/TclapUtils.hpp
@@ -39,8 +39,8 @@ namespace TCLAP
 		{
 			std::cout << "This is " << _progName << " version " << casema::getVersion() << " (" << casema::getBranchRefspec() << " branch)\n";
 			std::cout << "Built from commit " << casema::getCommitHash() << "\n";
-		    std::cout << "CASEMA homepage: <http://www.cadet-web.de>\n";
-		    std::cout << "Fork CASEMA on GitHub: <https://github.com/modsim/CASEMA>\n";
+			std::cout << "CADET homepage: <http://cadet.github.io/>\n";
+			std::cout << "Fork CADET-Semi-Analytic on GitHub: <https://github.com/cadet/CADET-Semi-Analytic>\n";
 		    std::cout << "Report bugs to the issue tracker on GitHub or <cadet@fz-juelich.de>" << std::endl;
 		}