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Run cellbender after Cellranger aggr #398

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SimonE1220 opened this issue Dec 4, 2024 · 0 comments
Open

Run cellbender after Cellranger aggr #398

SimonE1220 opened this issue Dec 4, 2024 · 0 comments

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@SimonE1220
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Dear all,
I need to use Cellranger aggr to combine different Samples. The Cellranger aggr function does not produce a raw_feature_bc_matrix_h5 only a filtered one. It uses as an input the molucule_info.h5.

How can I run Cellbender on such data.

Thank you very much.
Best, Simon

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