File "csamtools.pyx", line 763, in csamtools.Samfile._open (pysam/csamtools.c:8313)

[brianpenghe]

Traceback (most recent call last):
File "/../home/georgi/code/bamPreprocessing.py", line 145, in
main(sys.argv)
File "/../home/georgi/code/bamPreprocessing.py", line 31, in main
outfile = pysam.Samfile(outputfilename, "wb", header=outheader)
File "csamtools.pyx", line 597, in csamtools.Samfile.cinit (pysam/csamtools.c:6505)
File "csamtools.pyx", line 763, in csamtools.Samfile._open (pysam/csamtools.c:8313)

IOError: could not open file ../13985-50mers-W6i-1-TopHat-2.0.8-ENSEMBL66/accepted_hits.preprocessed.bam

[brianpenghe]

This error could have been generated by attempting to create a file at a location where permission to write is denied.