From 9fd9b6e35f0c87e8525ffae8aee4d33257ae0afd Mon Sep 17 00:00:00 2001 From: crnolan Date: Fri, 1 Nov 2024 01:17:44 +0000 Subject: [PATCH] deploy: f1890963ef5d29e50b35ef64c8155290932ec6bc --- index.html | 2 +- index.json | 2 +- index.xml | 2 +- project/index.html | 2 +- project/index.xml | 2 +- project/project_8/index.html | 20 ++++++++++ projects/index.html | 76 +++++++++++++++++++++++++++++++++++- sitemap.xml | 2 +- 8 files changed, 101 insertions(+), 7 deletions(-) create mode 100644 project/project_8/index.html diff --git a/index.html b/index.html index bc15354..c9c2b70 100644 --- a/index.html +++ b/index.html @@ -46,7 +46,7 @@ Brainhack Global 2024!

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The Brainhack Global team built up a set of resources for you to help you organize your local Brainhack including guidelines, checklists, template forms, press release materials and more.

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2024https://www.brainhack.org/global2024/Brainhack Marseillehttps://www.brainhack.org/global2024/events/brainhack_marseille/Wed, 27 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/events/brainhack_marseille/Brainhack Donostiahttps://www.brainhack.org/global2024/events/brainhack_donostia/Mon, 25 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/events/brainhack_donostia/Brainhack Aushttps://www.brainhack.org/global2024/events/brainhack_aus/Mon, 04 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/events/brainhack_aus/<link>https://www.brainhack.org/global2024/code-of-conduct/</link><pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate><guid>https://www.brainhack.org/global2024/code-of-conduct/</guid><description/></item><item><title/><link>https://www.brainhack.org/global2024/faq/</link><pubDate>Mon, 01 Jan 0001 00:00:00 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+0000https://www.brainhack.org/global2024/project/project_2/surname namehttps://www.brainhack.org/global2024/author/surname-name/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/author/surname-name/ \ No newline at end of file +Brainhack Global 2024https://www.brainhack.org/global2024/Brainhack Global 2024Wowchemy (https://wowchemy.com)en-us© Brainhack Global 2024Wed, 27 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngBrainhack Global 2024https://www.brainhack.org/global2024/Brainhack Marseillehttps://www.brainhack.org/global2024/events/brainhack_marseille/Wed, 27 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/events/brainhack_marseille/Brainhack Donostiahttps://www.brainhack.org/global2024/events/brainhack_donostia/Mon, 25 Nov 2024 00:00:00 +0000https://www.brainhack.org/global2024/events/brainhack_donostia/Brainhack 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analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/surname namehttps://www.brainhack.org/global2024/author/surname-name/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/author/surname-name/ \ No newline at end of file diff --git a/project/index.html b/project/index.html index f2f20c6..44e438f 100644 --- a/project/index.html +++ b/project/index.html @@ -1,6 +1,6 @@ Projects | Brainhack Global 2024

Projects

+
Brainhack Global 2024

    Projects

    diff --git a/project/index.xml b/project/index.xml index 9855d3f..c128c3d 100644 --- a/project/index.xml +++ b/project/index.xml @@ -1 +1 @@ -Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/ \ No newline at end of file +Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/ \ No newline at end of file diff --git a/project/project_8/index.html b/project/project_8/index.html new file mode 100644 index 0000000..9c09882 --- /dev/null +++ b/project/project_8/index.html @@ -0,0 +1,20 @@ + +Neurodesk: build interactive examples to learn about neuroimaging analysis | Brainhack Global 2024

    Neurodesk: build interactive examples to learn about neuroimaging analysis

    Last updated on +Nov 1, 2024

    Title

    Neurodesk: build interactive examples to learn about neuroimaging analysis

    Leaders

    Thuy Dao (Mattermost @thuy)

    Collaborators

    Steffen Bollmann (Mattermost @sbollmann_mri), Andrew Jahn, Monika Doerig

    Brainhack Global 2024 Event

    Brainhack Aus

    Project Description

    This project aims to build, test, and maintain interactive neuroimaging analysis examples using Jupyter notebooks, GitHub Actions, and Neurodesk. Although resources like Andy’s Brainbook provide excellent learning material, they lack interactivity and can quickly become outdated as software functionalities and parameters evolve, often breaking tutorials.

    By leveraging Neurodesk’s containerized environment, we can create reliable, reproducible examples that allow users to explore parameters interactively and build a foundation for their own analyses. These notebooks will also serve as open materials for workshops, facilitating hands-on learning and collaborative projects. Additionally, automating testing with GitHub Actions will ensure examples remain functional and up-to-date.

    This project also has potential for community growth: extending the notebook collection through contributions from global Brainhack events would enrich the resource pool with diverse analysis techniques, supporting a broad range of neuroimaging needs.

    https://github.com/NeuroDesk/example-notebooks

    Goals for Brainhack Global

    Good first issues

    1. AFNI_01_DataDownload

    2. AFNI_04_Preprocessing

    Communication channels

    Mattermost +Github Discussion

    Skills

    • Knowledge of analysis procedures.
    • Bash
    • Python

    Onboarding documentation

    README +Existing examples

    What will participants learn?

    • Neurodesk
    • Github
    • The toolkit they want to document, learn, or share their own pipeline

    Data to use

    OpenNeuro or other openly available dataset

    Number of collaborators

    2

    Credit to collaborators

    Project contributors will be listed in their notebooks and Neurodesk documentation and offered co-authorship in the global OHBM 2025 abstract describing this work.

    Image

    Leave this text if you don’t have an image yet.

    Type

    data_management, pipeline_development, tutorial_recording

    Development status

    2_releases_existing

    Topic

    connectome, data_visualisation, MR_methodologies, physiology, reproducible_scientific_methods, statistical_modelling, systems_neuroscience, tractography

    Tools

    AFNI, ANTs, BIDS, Brainstorm, CPAC, Datalad, FieldTrip, fMRIPrep, Freesurfer, FSL, Jupyter, MNE, MRtrix, Nipype, SPM

    Programming language

    Python, shell_scripting, unix_command_line

    Modalities

    fMRI, MRI

    Git skills

    0_no_git_skills, 1_commit_push

    Anything else?

    No response

    Things to do after the project is submitted and ready to review.

    • Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
    • Twitter-sized summary of your project pitch.

    Date
    Jan 1, 0001 12:00 AM
    + + + + + + + + +
    \ No newline at end of file diff --git a/projects/index.html b/projects/index.html index 0f10c34..4200446 100644 --- a/projects/index.html +++ b/projects/index.html @@ -174,7 +174,81 @@ PCA -diffusion

    Why a centralised project submission?

    As the Brainhack Global team, we aim to :

    • create a (de)centralized collaborative working platform,
    • facilitate & increase across-site collaborations and interactions,
    • give more visibility to the projects run under Brainhack Global,
    • encourage sharing ideas, experiences and knowledge across parties,
    • to remove barriers and allow contributions by researchers from all origins and +diffusion

    Neurodesk: build interactive examples to learn about neuroimaging analysis

    This project aims to build, test, and maintain interactive neuroimaging analysis examples using Jupyter notebooks, GitHub Actions, …

     Project URL + +Git level: 0 none + +Git level: 1 commit push + +Hub melbourne aus + +fMRI + +MRI + +documentation + +Python + +shell scripting + +Unix command line + +data management + +documentation + +pipeline development + +visualisation + +AFNI + +ANTs + +BIDS + +Brainstorm + +Datalad + +FieldTrip + +fMRIPrep + +Freesurfer + +FSL + +Jupyter + +MNE + +MRtrix + +Nipype + +SPM + +connectome + +data visualisation + +MR methodologies + +physiology + +reproducible scientific methods + +statistical modelling + +systems neuroscience + +tutorial recording + +CPAC + +tractography

    Why a centralised project submission?

    As the Brainhack Global team, we aim to :

    • create a (de)centralized collaborative working platform,
    • facilitate & increase across-site collaborations and interactions,
    • give more visibility to the projects run under Brainhack Global,
    • encourage sharing ideas, experiences and knowledge across parties,
    • to remove barriers and allow contributions by researchers from all origins and disciplines.

    Given that many events in this year Brainhack Global might be in part run virtually, a common platform for project submission and listing will allow you to submit your initial project call to gather interests from researchers from diff --git a/sitemap.xml b/sitemap.xml index 7e07652..46d8076 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -1 +1 @@ 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\ No newline at end of file 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\ No newline at end of file