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+0000https://www.brainhack.org/global2024/project/project_12/surname namehttps://www.brainhack.org/global2024/author/surname-name/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/author/surname-name/TIYA: Tune Into Your heArthttps://www.brainhack.org/global2024/project/project_14/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_14/ \ No newline at end of file diff --git a/project/index.html b/project/index.html index 4ddcce1..c2ed201 100644 --- a/project/index.html +++ b/project/index.html @@ -1,6 +1,6 @@ Projects | Brainhack Global 2024

Projects

+
Brainhack Global 2024

    Projects

    diff --git a/project/index.xml b/project/index.xml index 780130a..0760231 100644 --- a/project/index.xml +++ b/project/index.xml @@ -1 +1 @@ -Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/PsyR: An R package for better inference in multivariate statistical analysishttps://www.brainhack.org/global2024/project/project_12/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_12/TIYA: Tune Into Your heArthttps://www.brainhack.org/global2024/project/project_14/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_14/ \ No newline at end of file +Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI based brain thermometryhttps://www.brainhack.org/global2024/project/project_17/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_17/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/PsyR: An R package for better inference in multivariate statistical analysishttps://www.brainhack.org/global2024/project/project_12/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_12/TIYA: Tune Into Your heArthttps://www.brainhack.org/global2024/project/project_14/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_14/ \ No newline at end of file diff --git a/project/project_17/index.html b/project/project_17/index.html new file mode 100644 index 0000000..f2c0302 --- /dev/null +++ b/project/project_17/index.html @@ -0,0 +1,19 @@ + +MRI based brain thermometry | Brainhack Global 2024

    MRI based brain thermometry

    Last updated on +Nov 2, 2024

    Title

    MRI brain thermometry

    Leaders

    Christian Behler (@ChristianBehler), Anna Behler (@Anna_Neurosci)

    Collaborators

    No response

    Brainhack Global 2024 Event

    Brainhack Aus

    Project Description

    The brain is hot and its thermoregulation underlies different boundary conditions than the body’s thermoregulation. Heat in the brain is produced as by-product of metabolism and gets primarily removed by blood flow. In the presence of tumours or neurodegenerative processes this balance can be disturbed. +MRI can be used to measure brain temperature via spectroscopy or diffusion. The existing analysis pipelines face many problems. That’s what this project is going to address. The first aim is to build a model for the calibration of MRS, and test it on real data. Developing code to handle MRS files is also on the to do list. Secondly, we’d like improve the thermometry based on DWI by automated segmentation of the fourth ventricle. It’s also planned to explore how machine learning could be used to remove diffusion artefacts.

    https://github.com/AnnaBhlr/MRI_BrainThermometry

    Goals for Brainhack Global

    • Model for MRS calibration
    • Code/pipeline to handle MRS files
    • Automated segmentation of 4th ventricle on diffusion data
    • Ideas brainstormed on diffusion artefact removal

    Good first issues

    • Could GLMM a good path for model of MRS calibration?
    • Which open source data sets could be used to implement automated segmentation?

    Communication channels

    https://mattermost.brainhack.org/brainhack/channels/brainthermometry

    Skills

    Newcomer to deep learning pro…each project aim fits a different skill level.

    Onboarding documentation

    No response

    What will participants learn?

    Participants would learn about an overlooked topic and methodology. Coding newbie can start easy with computational modelling and how to handle imaging data.

    Data to use

    No response

    Number of collaborators

    more

    Credit to collaborators

    Project contributors will be acknowledged on project readme and will be listed as co-authors if project eventually ends in a publication.

    Image

    Picture 1

    Type

    coding_methods, data_management, method_development, pipeline_development

    Development status

    0_concept_no_content

    Topic

    deep_learning, diffusion, MR_methodologies, statistical_modelling, other

    Tools

    Brainstorm, other

    Programming language

    Python

    Modalities

    DWI, other

    Git skills

    0_no_git_skills

    Anything else?

    No response

    Things to do after the project is submitted and ready to review.

    • Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
    • Twitter-sized summary of your project pitch.

    Date
    Jan 1, 0001 12:00 AM
    + + + + + + + + +
    \ No newline at end of file diff --git a/projects/index.html b/projects/index.html index ae76bf7..ce5e7d8 100644 --- a/projects/index.html +++ b/projects/index.html @@ -149,7 +149,39 @@ TDCS -TMS

    MRI denoising using MP-PCA

    Denoising of EPI MRI data has become a common component of MRI pre-processing pipelines. It is most prevalent in the …

     Project URL +TMS

    MRI based brain thermometry

    The brain is hot and its thermoregulation underlies different boundary conditions than the body’s thermoregulation. Heat in …

     Project URL + +Git level: 0 none + +Hub melbourne aus + +DWI + +MRI + +documentation + +Python + +coding methods + +data management + +documentation + +method development + +pipeline development + +Brainstorm + +deep learning + +MR methodologies + +statistical modelling + +diffusion

    MRI denoising using MP-PCA

    Denoising of EPI MRI data has become a common component of MRI pre-processing pipelines. It is most prevalent in the …

     Project URL Git level: 1 commit push diff --git a/sitemap.xml b/sitemap.xml index 87aec97..1b653bf 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -1 +1 @@ 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