diff --git a/index.html b/index.html index a905e72..5e9a574 100644 --- a/index.html +++ b/index.html @@ -46,7 +46,7 @@ Brainhack Global 2024!

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The Brainhack Global team built up a set of resources for you to help you organize your local Brainhack including guidelines, checklists, template forms, press release materials and more.

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Meet the Team

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Johanna Bayer

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Projects

+
Brainhack Global 2024

    Projects

    diff --git a/project/index.xml b/project/index.xml index 6128cb7..780130a 100644 --- a/project/index.xml +++ b/project/index.xml @@ -1 +1 @@ -Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/TIYA: Tune Into Your heArthttps://www.brainhack.org/global2024/project/project_14/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_14/ \ No newline at end of file +Projects | Brainhack Global 2024https://www.brainhack.org/global2024/project/ProjectsWowchemy (https://wowchemy.com)en-us© Brainhack Global 2024https://www.brainhack.org/global2024/images/icon_hu405768a2e56dba1817ce36477148a60d_2978_512x512_fill_lanczos_center_3.pngProjectshttps://www.brainhack.org/global2024/project/behapy: A behavioural neuroscience analysis package for Pythonhttps://www.brainhack.org/global2024/project/project_5/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_5/BIDS: IP-Freelyhttps://www.brainhack.org/global2024/project/project_1/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_1/MRI denoising using MP-PCAhttps://www.brainhack.org/global2024/project/project_2/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_2/Neurodesk: build interactive examples to learn about neuroimaging analysishttps://www.brainhack.org/global2024/project/project_8/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_8/PsyR: An R package for better inference in multivariate statistical analysishttps://www.brainhack.org/global2024/project/project_12/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_12/TIYA: Tune Into Your heArthttps://www.brainhack.org/global2024/project/project_14/Mon, 01 Jan 0001 00:00:00 +0000https://www.brainhack.org/global2024/project/project_14/ \ No newline at end of file diff --git a/project/project_12/index.html b/project/project_12/index.html new file mode 100644 index 0000000..745358b --- /dev/null +++ b/project/project_12/index.html @@ -0,0 +1,28 @@ + +PsyR: An R package for better inference in multivariate statistical analysis | Brainhack Global 2024

    PsyR: An R package for better inference in multivariate statistical analysis

    Last updated on +Nov 1, 2024

    Title

    PsyR: An R package for better inference in multivariate statistical analysis

    Leaders

    Kelly Garner (Mattermost: kels)

    Collaborators

    Christopher Nolan (Mattermost: cnolan)

    Brainhack Global 2024 Event

    Brainhack Aus

    Project Description

    We consistently use massive data sets across neuroscience and psychology. The routine gathering of big data requires that we are well equipped with tools that allow us to conduct appropriate multivariate statistics.

    Multivariate statistical analysis typically follows a two stage procedure, an omnibus test of the global null hypothesis followed by post-hoc tests of specific effects. It is not well known that under certain circumstances this leads to a drastically inflated rate of type 1 error. It is even less well known that this procedure can also lead to an even lessor known type IV error (incorrect interpretation of a correctly rejected hypothesis)!

    It is possible to avoid these dragons by using an alternative procedure where all inferences are derived from simultaneous confidence intervals (SCIs) on contrasts of interest. This approach provides interval inferences on effect sizes and it also ensures that the familywise type 1 error rate associated with directional inferences (the inferences usually derived from tests of null hypotheses) is controlled at alpha. One piece of software (PSY) can produce SCIs appropriate for planned analyses (where contrasts are defined independently of the data) and for more flexible analyses where contrasts are defined on a post hoc basis. However, this software is only available for use on windows and cannot be scripted into reproducible workflows.

    We have been building an R package that implements the functions of PSY, and to make this method of statistical inference available to the masses! We are ready for you to play with some of the functions to analyse your own data, and create Quarto documents that document your workflow, to help future users. If you are feeling hacky enough, we could also use help developing further the R package, which is around 80% finished right now.

    https://github.com/kel-github/PSY2R +- this has all the code we used to get started. I’ll share the package code at the event +https://doi.org/10.1177/0013164402062002001 +- this is the paper that defines the functionality of Psy. +https://r-pkgs.org/ +- Hadley Wickham’s bible for building R packages

    Goals for Brainhack Global

    Bring your own data and use the functions we have already written. This will help us learn how user friendly they are and what can be done to improve interaction with the function. +Document own data analysis in quarto documents to help future users +Contribute to the R package, particularly with higher level functions that handle data wrangling and standardisation +Build a GitHub website for the package

    Good first issues

    1. issue one: read [this paper](https://doi.org/10.1177/0013164402062002001 +to get an overview of what Psy does)

    2. issue two: find a dataset that requires an ANOVA analysis, share it with the team and we’ll talk you through how to use Psy to analyse it

    3. issue three: If not already, get comfortable with quarto documents - https://quarto.org/

    4. issue four: Go through the exercises that show you how to create an R package in chapter 1 of this book +.

    Communication channels

    https://mattermost.brainhack.org/brainhack/channels/psy2r

    Skills

    • R: basic and advanced
    • Stats knowledge: can run an ANOVA and know what a confidence interval is
    • Github: can clone and make pull requests (if needed, we’ll show you how)

    Onboarding documentation

    No response

    What will participants learn?

    Participants will learn about multivariate data analysis:

    • how to compute confidence intervals for between x within effects, ideally on their own data
    • what goes under the hood of an R package

    Data to use

    No response

    Number of collaborators

    4

    Credit to collaborators

    Project contributors will be listed in the project ReadMe, and as authors on any help documents

    Image

    Leave this text if you don’t have an image yet.

    Type

    coding_methods, documentation, pipeline_development

    Development status

    1_basic structure

    Topic

    statistical_modelling

    Tools

    other

    Programming language

    R

    Modalities

    behavioral, eye_tracking

    Git skills

    1_commit_push, 2_branches_PRs

    Anything else?

    No response

    Things to do after the project is submitted and ready to review.

    • Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
    • Twitter-sized summary of your project pitch.

    Date
    Jan 1, 0001 12:00 AM
    + + + + + + + + +
    \ No newline at end of file diff --git a/projects/index.html b/projects/index.html index 40c20c7..ae76bf7 100644 --- a/projects/index.html +++ b/projects/index.html @@ -249,7 +249,31 @@ CPAC -tractography

    TIYA: Tune Into Your heArt

    The aim of our project is modulating heart rate interoception through music feedback to check if getting in tune with your heart …

     Project URL +tractography

    PsyR: An R package for better inference in multivariate statistical analysis

    We consistently use massive data sets across neuroscience and psychology. The routine gathering of big data requires that we are …

     Project URL + +Git level: 1 commit push + +Git level: 2 branches PRs + +Hub melbourne aus + +behavioral + +eye tracking + +documentation + +R + +Skills: comfortable + +coding methods + +documentation + +pipeline development + +statistical modelling

    TIYA: Tune Into Your heArt

    The aim of our project is modulating heart rate interoception through music feedback to check if getting in tune with your heart …

     Project URL Git level: 0 none diff --git a/sitemap.xml b/sitemap.xml index 659db57..87aec97 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -1 +1 @@ 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