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assertion_evidence.yaml
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assertion_evidence.yaml
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name: assertion-evidence-schema
title: Assertion Evidence Schema
id: https://identifiers.org/brain-bican/assertion-evidence-schema
imports:
- linkml:types
prefixes:
bican: https://identifiers.org/brain-bican/vocab/
brainkb: https://brainkb.org/
datacite: http://purl.org/spar/datacite/
dcterms: http://purl.org/dc/terms/
eco: http://purl.obolibrary.org/obo/ECO_
edam: http://edamontology.org/
foaf: http://xmlns.com/foaf/0.1/
iao: http://purl.obolibrary.org/obo/IAO_
linkml: https://w3id.org/linkml/
oa: http://www.w3.org/ns/oa#
prov: http://www.w3.org/ns/prov#
ro: http://purl.obolibrary.org/obo/RO_
schema: http://schema.org/
sepio: http://purl.obolibrary.org/obo/SEPIO_
sio: http://semanticscience.org/resource/SIO_
spdx: http://spdx.org/rdf/terms#
braiankb: http://example.org/braiankb/
default_prefix: brainkb
default_range: string
enums:
Categories:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
permissible_values:
Behavioral: {}
Biomarker: {}
DrugTarget: {}
Genetic: {}
ClinicalTrial: {}
Etiologic: {}
Neuroimaging: {}
Electrophysiological: {}
Molecular: {}
Pharmacological: {}
Neuropsychological: {}
Neurogenetic: {}
Neurochemical: {}
Neuroanatomical: {}
Neurodevelopmental: {}
Neuroinflammatory: {}
Neuroplasticity: {}
Neuropathological: {}
Neurocomputational: {}
Neuroendocrine: {}
Neuropharmacogenomic: {}
Neuroproteomic: {}
Neurogenomic: {}
Epigenetic: {}
Environmental: {}
Translational: {}
Therapeutic: {}
CognitiveNeuroscience: {}
EvidenceStrength:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
permissible_values:
HighlySignificant:
description: P value less than 0.01
Significant:
description: P value less than 0.05
MarginallySignificant:
description: P value less than 0.10
NotSignificant:
description: P value greater than or equal to 0.10
Unknown:
description: Specifies that the significance level is unknown as the information
is not present in the study.
EvidenceDirection:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
permissible_values:
supporting: {}
disputing: {}
inconclusive: {}
slots:
was_associate_with:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
has_identifier:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
has_annotation:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
was_generated_by:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
has_evidence_line:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
reference:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
has_evidence_item:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
member:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
classes:
Activity:
description: An activity is something that occurs over a period of time and acts
upon or with entities; it may include consuming, processing, transforming, modifying,
relocating, using, or generating entities.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slots:
- was_associate_with
slot_usage:
was_associate_with:
slot_uri: prov:wasAssociatedWith
range: Agent
attributes:
ended_at_time:
description: The prov:endedAtTime establishes the relationship between prov:Activity
and xsd:DateTime that allows one to specify the time when the activity ended.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
alias: endedAtTime
range: datetime
started_at_time:
description: The prov:startedAtTime establishes the relationship between prov:Activity
and xsd:DateTime that allows one to specify the time when the activity started.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
alias: startedAtTime
range: datetime
class_uri: prov:Activity
Agent:
description: An agent is something that bears some form of responsibility for
an activity taking place, for the existence of an entity, or for another agent's
activity.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slots:
- has_identifier
slot_usage:
has_identifier:
slot_uri: edam:has_identifier
range: Identifier
class_uri: prov:Agent
Annotation:
description: An annotation is a written explanatory or critical description, or
other in-context information (e.g., pattern, motif, link), that has been associated
with data or other types of information.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
class_uri: oa:Annotation
Assertion:
description: A statement made by a particular agent on a particular occasion that
a particular proposition is true, based on the evaluation of one or more lines
of evidence.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slots:
- has_annotation
- was_generated_by
- has_evidence_line
slot_usage:
has_annotation:
slot_uri: sio:000255
range: Annotation
was_generated_by:
slot_uri: prov:wasGeneratedBy
range: Activity
has_evidence_line:
description: A relationship between an assertion or proposition and an evidence
line used in evaluating its validity.
slot_uri: sepio:0000006
range: EvidenceLine
attributes:
has_assertion_category:
description: The brainkb:hasAssertionCategory property relates brainkb:Evidence
and brainkb:Categories, specifying the classification or category that the
assertion belongs to.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: brainkb:has_assertion_category
range: Categories
has_assertion_description:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: brainkb:has_assertion_description
range: string
has_assertion_summary:
description: The brainkb:has_assertion_text property relates an eco:Assertion
to an xsd:string, providing a textual excerpt of the assertion being made.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: brainkb:has_assertion_summary
range: string
class_uri: sepio:0000001
CellAnnotation:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Annotation
class_uri: brainkb:CellAnnotation
Document:
description: A collection of information content entities intended to be understood
together as a whole
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: EvidenceItem
attributes:
identifier:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: datacite:identifier
range: uri
class_uri: iao:0000310
EvidenceItem:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slots:
- reference
slot_usage:
reference:
slot_uri: sepio:0000442
range: Document
class_uri: sepio:0000149
EvidenceLine:
description: An evidence line represents an independent and meaningful argument
for or against a particular proposition, that is based on the interpretation
of one or more pieces of information as evidence.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slots:
- has_evidence_item
- was_generated_by
slot_usage:
has_evidence_item:
description: A relation holding between an evidence line and an individual
information entity that contributes to the argument it represents.
slot_uri: sepio:0000084
range: EvidenceItem
was_generated_by:
slot_uri: prov:wasGeneratedBy
range: Activity
attributes:
evidence_direction:
description: A relation indicating whether an evidence line supports or disputes
a target proposition (or represents inconclusive evidence that is not sufficient
for either).
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: sepio:0000183
range: EvidenceDirection
evidence_line_strength:
description: A relation describing the degree of support provided by an evidence
line for a target assertion or proposition.
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: sepio:0000132
range: EvidenceStrength
has_evidence_category:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: brainkb:has_evidence_category
range: Categories
has_evidenceline_description:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
slot_uri: braiankb:has_evidenceline_description
range: string
class_uri: sepio:0000002
Group:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Agent
class_uri: foaf:Group
Identifier:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
class_uri: edam:data_0842
OrcidIdentifier:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: PersonIdentifier
class_uri: edam:data_4022
Organization:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Group
class_uri: prov:Organization
Person:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Agent
slots:
- member
slot_usage:
member:
slot_uri: foaf:member
range: Organization
class_uri: prov:Person
PersonIdentifier:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Identifier
class_uri: edam:data_2118
SoftwareAgent:
from_schema: https://identifiers.org/brain-bican/assertion-evidence-schema
is_a: Agent
class_uri: prov:SoftwareAgent