generate_docs.yaml

name: Generating Documentation

on:
  push:
    branches:
      - main

permissions:
  contents: write

jobs:
  check_generate_other_formats:
    runs-on: ubuntu-latest
    steps:
      - name: Check if 'generate_other_formats' workflow is running
        id: check_status
        run: |
          generate_workflow_id=$(gh api -X GET /repos/${{ github.repository }}/actions/workflows/generate_other_formats.yaml/runs \
          --jq '.workflow_runs[] | select(.status == "in_progress") | .id')
          echo "workflow_id=$generate_workflow_id" >> $GITHUB_ENV

  wait_for_generate_other_formats:
    needs: check_generate_other_formats
    runs-on: ubuntu-latest
    if: env.workflow_id != ''
    steps:
      - name: Wait for 'generate_other_formats' to complete
        run: |
          while [[ "$(gh api -X GET /repos/${{ github.repository }}/actions/runs/$generate_workflow_id --jq '.status')" != "completed" ]]; do
            echo "Waiting for generate_other_formats workflow to complete..."
            sleep 30
          done

  generate:
    needs: [check_generate_other_formats, wait_for_generate_other_formats]
    runs-on: ubuntu-latest
    steps:
      - name: Checkout this repository
        uses: actions/checkout@v3

      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.9

      - name: Install the required python packages
        run: python -m pip install .[docs]

      - name: Other installations
        run: |
          sudo apt-get update
          sudo apt-get install -y build-essential git wget curl

      - name: Create local docs
        run: |
          mkdir docs
          cp -r src/docs/* docs/
          touch docs/.nojekyll
          cp erdiagram-autogen/ansrs.md docs/ansrs.md
          cp erdiagram-autogen/genome_annotation.md docs/genome_annotation.md
          cp erdiagram-autogen/library_generation.md docs/library_generation.md
          gen-doc -d docs linkml-schema/library_generation.yaml
          mv docs/index.md docs/index_library_generation.md
          gen-doc -d docs linkml-schema/ansrs.yaml
          mv docs/index.md docs/index_ansrs.md
          gen-doc -d docs linkml-schema/genome_annotation.yaml
          mv docs/index.md docs/index_genome_annotation.md
          mv docs/index_main.md docs/index.md

      - name: Deploy to GitHub Pages
        run: mkdocs gh-deploy --force



# name: generating documentation

# on:
#   push:
#     branches:
#       - main

# permissions:
#   contents: write

# jobs:
#   generate:
#     runs-on: ubuntu-latest
#     steps:
#       - name: Checkout this repository
#         uses: actions/checkout@v3

#       - name: Set up Python
#         uses: actions/setup-python@v4
#         with:
#           python-version: 3.9

#       - name: Install the required python packages
#         run: python -m pip install .[docs]

#       - name: Other installations
#         run: |
#           sudo apt-get update
#           sudo apt-get install -y build-essential git wget curl

#       - name: Create local docs
#         run: |
#           mkdir docs
#           cp -r src/docs/* docs/
#           touch docs/.nojekyll
#           cp erdiagram-autogen/ansrs.md docs/ansrs.md
#           cp erdiagram-autogen/genome_annotation.md docs/genome_annotation.md
#           cp erdiagram-autogen/library_generation.md docs/library_generation.md
#           gen-doc -d docs linkml-schema/library_generation.yaml
#           mv docs/index.md docs/index_library_generation.md
#           gen-doc -d docs linkml-schema/ansrs.yaml
#           mv docs/index.md docs/index_ansrs.md
#           gen-doc -d docs linkml-schema/genome_annotation.yaml
#           mv docs/index.md docs/index_genome_annotation.md
#           mv docs/index_main.md docs/index.md
          


#       - name: Deploy to GitHub Pages
#         run: mkdocs gh-deploy --force