generate_yaml_model.yaml

# Generates linkml yaml schema from metadata in googlesheets using schemasheets
name: generating yaml file

on:
  workflow_dispatch:
    inputs:
      model:
        description: 'model name'
        required: true
        type: string

jobs:
  generate_libgen_yaml:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout this repository
        uses: actions/checkout@v3

      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.9

      - name: Install the required python packages
        run: |
          python -m pip install .[test]
          pip install git+https://github.com/brain-bican/bkbit.git
          pip install git+https://github.com/linkml/schemasheets.git@649af7e1

      - name: Other installations
        run: |
          sudo apt-get update
          sudo apt-get install -y build-essential git wget curl

      # Check if download-dir exists; if not, create it
      - name: Check if download-dir exists
        run: |
          if [ ! -d "linkml-schema/source_${{ inputs.model }}/gsheet_output" ]; then
            echo "Directory does not exist. Making directory"
            mkdir -p linkml-schema/source_${{ inputs.model }}/gsheet_output
          fi
      
      # Check if gsheet.yaml exists
      - name: Check if gsheet.yaml exists
        run: |
          if [ ! -f "linkml-schema/source_${{ inputs.model }}/gsheet.yaml" ]; then
            echo "gsheet.yaml does not exist. Exiting"
            exit 1
          fi

      # Generate yaml model
      - name: Generate yaml model
        run: |
          cd linkml-schema
          bkbit schema2model -o ${{ inputs.model }}.yaml --gsheet --gsheet-download-dir source_${{ inputs.model }}/gsheet_output  source_${{ inputs.model }}/gsheet.yaml  --no-inlined
          cd ..

      # Generate unique branch name 
      - name: Generate unique branch name
        run: |
          BRANCH_NAME="autogenerated-yaml-$(date +%Y%m%d%H%M%S)"
          echo "Branch created: $BRANCH_NAME"
          echo "BRANCH_NAME=$BRANCH_NAME" >> $GITHUB_ENV
  
      # Create a pull request
      - name: Create a Pull Request
        uses: peter-evans/create-pull-request@v4
        with:
          token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
          commit-message: "Generate new version of the linkml model for ${{ inputs.model }}"
          branch: ${{ env.BRANCH_NAME }}
          title: "Auto PR: ${{ inputs.model }}.yaml generated from google spreadsheets using schemasheets"
          body: "This PR adds a autogenerated ${{ inputs.model }}.yaml file."
          base: main