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conda-environment.yml
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name: strandseqnation
channels:
- bioconda
- conda-forge
- defaults
- r
dependencies:
- bcftools=1.9=h4da6232_0
- bioconductor-biobase=2.38.0=r3.4.1_0
- bioconductor-biocgenerics=0.24.0=r3.4.1_0
- bioconductor-biocinstaller=1.28.0=r3.4.1_0
- bioconductor-biocparallel=1.12.0=r3.4.1_0
- bioconductor-biostrings=2.46.0=r3.4.1_0
- bioconductor-bsgenome=1.46.0=r3.4.1_0
- bioconductor-bsgenome.hsapiens.ucsc.hg38=1.4.1=r3.4.1_2
- bioconductor-delayedarray=0.4.1=r3.4.1_0
- bioconductor-fastseg=1.24.0=r3.4.1_0
- bioconductor-genomeinfodb=1.14.0=r3.4.1_0
- bioconductor-genomeinfodbdata=1.0.0=r3.4.1_1
- bioconductor-genomicalignments=1.14.1=r3.4.1_0
- bioconductor-genomicranges=1.30.3=r3.4.1_0
- bioconductor-iranges=2.12.0=r3.4.1_0
- bioconductor-rsamtools=1.30.0=r3.4.1_0
- bioconductor-rtracklayer=1.38.3=r3.4.1_0
- bioconductor-s4vectors=0.16.0=r3.4.1_0
- bioconductor-summarizedexperiment=1.8.0=r3.4.1_0
- bioconductor-xvector=0.18.0=r3.4.1_0
- bioconductor-zlibbioc=1.24.0=r3.4.1_0
- filechunkio=1.6=py36_0
- freebayes=1.2.0=py36h82df9c4_2
- ftputil=3.2=py36_0
- htslib=1.7=0
- libdeflate=1.0=h470a237_0
- parallel=20160622=1
- perl-threaded=5.22.0=13
- pyasn1-modules=0.0.5=py36_0
- pyfaidx=0.5.4.1=py_0
- pygraphviz=1.3.1=py36_0
- pynacl=0.3.0=py36_0
- pysam=0.14.1=py36hae42fb6_1
- pysftp=0.2.9=py36_0
- pyvcf=0.6.8=py36_0
- r-data.table=1.10.4=r3.4.1_0
- r-peer=1.3=r341h470a237_1
- rsa=3.1.4=py36_0
- samtools=1.9=h46bd0b3_0
- snakemake=5.2.0=py36_0
- urllib3=1.12=py36_0
- whatshap=0.17=py36h470a237_0
- xopen=0.3.2=py_1
- aioeasywebdav=2.2.0=py36_0
- aiohttp=3.3.2=py36h14c3975_0
- appdirs=1.4.3=py_1
- asn1crypto=0.24.0=py_1
- async-timeout=3.0.0=py36_0
- attrs=18.1.0=py_1
- blas=1.1=openblas
- boost=1.67.0=py36h3e44d54_0
- boost-cpp=1.67.0=h3a22d5f_0
- boto3=1.7.60=py_0
- botocore=1.10.61=py_0
- bzip2=1.0.6=h470a237_2
- ca-certificates=2018.4.16=0
- cachetools=2.0.1=py_0
- cairo=1.14.12=he56eebe_1
- certifi=2018.4.16=py36_0
- cffi=1.11.5=py36_0
- chardet=3.0.4=py36_2
- cmake=3.11.4=0
- configargparse=0.13.0=py_1
- cryptography=2.2.1=py36hdffb7b8_1
- curl=7.60.0=0
- decorator=4.3.0=py_0
- docutils=0.14=py36_0
- dropbox=7.3.1=py36_0
- expat=2.2.5=hfc679d8_1
- fontconfig=2.13.0=h074f895_2
- freetype=2.8.1=0
- gettext=0.19.8.1=0
- glib=2.55.0=0
- google-auth=1.2.1=py_0
- google-auth-httplib2=0.0.2=py36_0
- google-cloud-core=0.24.1=py36_0
- google-cloud-storage=1.1.1=py36_0
- google-resumable-media=0.0.2=py36_0
- googleapis-common-protos=1.5.3=py_1
- graphite2=1.3.11=hfc679d8_0
- graphviz=2.38.0=7
- gsl=2.4=blas_openblas_0
- harfbuzz=1.7.6=0
- httplib2=0.11.3=py36_0
- icu=58.2=hfc679d8_0
- idna=2.7=py36_2
- idna_ssl=1.0.0=0
- jinja2=2.10=py_1
- jmespath=0.9.3=py_1
- jpeg=9c=h470a237_0
- jsonschema=2.6.0=py36_1
- krb5=1.14.6=0
- libffi=3.2.1=3
- libiconv=1.15=h470a237_1
- libpng=1.6.34=ha92aebf_1
- libprotobuf=3.5.2=hd28b015_1
- libssh2=1.8.0=h5b517e9_2
- libtiff=4.0.9=he6b73bb_1
- libtool=2.4.6=0
- libuuid=1.0.3=1
- libuv=1.20.3=0
- libxcb=1.13=h470a237_1
- libxml2=2.9.8=h422b904_2
- markupsafe=1.0=py36_0
- multidict=4.3.1=py36h470a237_0
- ncurses=5.9=10
- networkx=2.1=py_1
- numpy=1.14.5=py36_blas_openblashd3ea46f_201
- openblas=0.2.20=8
- openssl=1.0.2o=0
- pandas=0.23.3=py36_0
- pango=1.40.14=hd50be51_1
- paramiko=2.1.2=py36_0
- pcre=8.39=0
- perl=5.26.2=h470a237_0
- pip=9.0.3=py36_0
- pixman=0.34.0=2
- prettytable=0.7.2=py_2
- protobuf=3.5.2=py36_0
- psutil=5.4.6=py36_0
- pthread-stubs=0.4=h470a237_1
- pyasn1=0.4.3=py_0
- pycparser=2.18=py_1
- python=3.6.5=1
- python-dateutil=2.7.3=py_0
- python-irodsclient=0.7.0=py_0
- pytz=2018.5=py_0
- pyyaml=3.12=py36_1
- r-assertthat=0.2.0=r3.4.1_0
- r-base=3.4.1=4
- r-bh=1.66.0_1=r3.4.1_0
- r-bindr=0.1.1=r3.4.1_0
- r-bindrcpp=0.2.2=r341h9d2a408_0
- r-bitops=1.0_6=r3.4.1_0
- r-cli=1.0.0=r3.4.1_0
- r-colorspace=1.3_2=r3.4.1_0
- r-cowplot=0.9.3=r341_0
- r-crayon=1.3.4=r3.4.1_0
- r-curl=3.2=r3.4.1_0
- r-devtools=1.13.6=r341_0
- r-dichromat=2.0_0=r3.4.1_0
- r-digest=0.6.15=r3.4.1_0
- r-dplyr=0.7.6=r341h9d2a408_0
- r-futile.logger=1.4.3=r3.4.1_0
- r-futile.options=1.0.0=r3.4.1_0
- r-ggplot2=2.2.1=r3.4.1_0
- r-git2r=0.21.0=r341h0c37787_0
- r-glue=1.3.0=r341_0
- r-gridextra=2.3=r3.4.1_0
- r-gtable=0.2.0=r3.4.1_0
- r-hexbin=1.27.2=r3.4.1_0
- r-httr=1.3.1=r3.4.1_0
- r-jsonlite=1.5=r3.4.1_0
- r-labeling=0.3=r3.4.1_0
- r-lambda.r=1.2=r3.4.1_0
- r-lattice=0.20_34=r3.4.1_0
- r-lazyeval=0.2.1=r3.4.1_0
- r-magrittr=1.5=r3.4.1_0
- r-mass=7.3_50=r341hc070d10_0
- r-matrix=1.2_14=r3.4.1_0
- r-matrixstats=0.53.1=r341_0
- r-mc2d=0.1_18=r3.4.1_0
- r-memoise=1.1.0=r3.4.1_0
- r-mime=0.5=r3.4.1_0
- r-munsell=0.5.0=r341_0
- r-mvtnorm=1.0_6=r3.4.1_0
- r-openssl=1.0.1=r3.4.1_0
- r-pillar=1.2.2=r341h6115d3f_1
- r-pkgconfig=2.0.1=r3.4.1_0
- r-plogr=0.2.0=r341h6115d3f_0
- r-plyr=1.8.4=r3.4.1_0
- r-purrr=0.2.4=r3.4.1_0
- r-r6=2.2.2=r3.4.1_0
- r-rcolorbrewer=1.1_2=r3.4.1_0
- r-rcpp=0.12.17=r341h9d2a408_0
- r-rcurl=1.95_4.11=r341ha4d7672_0
- r-reshape2=1.4.3=r3.4.1_0
- r-rlang=0.2.1=r341_0
- r-rstudioapi=0.7=r3.4.1_0
- r-scales=0.5.0=r3.4.1_0
- r-snow=0.4_2=r3.4.1_0
- r-stringi=1.2.3=r341_0
- r-stringr=1.3.1=r341_0
- r-tibble=1.4.2=r3.4.1_0
- r-tidyselect=0.2.4=r3.4.1_0
- r-utf8=1.1.3=r3.4.1_0
- r-viridislite=0.3.0=r3.4.1_0
- r-whisker=0.3_2=r3.4.1_0
- r-withr=2.1.1=r3.4.1_0
- r-xml=3.98_1.11=r341_0
- ratelimiter=1.2.0=py36_0
- readline=7.0=0
- requests=2.13.0=py36_0
- rhash=1.3.4=0
- s3transfer=0.1.13=py36_0
- scipy=1.1.0=py36_blas_openblashd3ea46f_201
- setuptools=40.0.0=py36_0
- six=1.11.0=py36_1
- sqlite=3.20.1=2
- tk=8.6.8=0
- wheel=0.31.1=py36_0
- wrapt=1.10.11=py36_0
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h470a237_2
- xorg-libice=1.0.9=h470a237_3
- xorg-libsm=1.2.2=h470a237_3
- xorg-libx11=1.6.5=h470a237_1
- xorg-libxau=1.0.8=h470a237_5
- xorg-libxdmcp=1.1.2=h470a237_6
- xorg-libxrender=0.9.10=h470a237_1
- xorg-renderproto=0.11.1=h470a237_2
- xorg-xproto=7.0.31=h470a237_7
- xz=5.2.3=0
- yaml=0.1.7=0
- yarl=1.2.6=py36h470a237_0
- zlib=1.2.11=h470a237_3
- bcrypt=3.1.4=py36h14c3975_0
- bz2file=0.98=py36_1
- datrie=0.7.1=py36_0
- intel-openmp=2018.0.3=0
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran=3.0.0=1
- libgfortran-ng=7.2.0=hdf63c60_3
- libstdcxx-ng=7.2.0=hdf63c60_3
- mkl=2018.0.3=1
- wget=1.19.5=h1ad7b7a_0