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q2-viromics function/tool missing? #23

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WenChenAAFC opened this issue Oct 31, 2024 · 1 comment
Open

q2-viromics function/tool missing? #23

WenChenAAFC opened this issue Oct 31, 2024 · 1 comment
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documentation Improvements or additions to documentation

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@WenChenAAFC
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WenChenAAFC commented Oct 31, 2024

I followed the instructions in the README step-by-step and installed q2-viromics. However, when I run the command

qiime viromics genomad-fetch-db --o-database genomad_db.qza --verbose,

I receive the error: Error: No such command 'viromics'.

This seems expected, as 'viromics' is not listed as an available tool or function. I'm not sure if I missed a step or if there’s an additional setup required.

@misialq
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misialq commented Nov 1, 2024

Hey @WenChenAAFC, thanks for opening the issue! While, we're investigating, I would recommend checking out the official QIIME 2 documentation: if you install the pathogenome distribution everyhting should work as expected.

@misialq misialq added the documentation Improvements or additions to documentation label Nov 1, 2024
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