Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ENH: allow FeatureData[MAG] as input to evaluate_busco action #151

Closed
wants to merge 11 commits into from

Conversation

Sann5
Copy link
Contributor

@Sann5 Sann5 commented Apr 8, 2024

What's new

Run it locally

  1. Check out the PR branch.

Assuming 1) you already have a local copy of q2-moshpit that is installed in editable mode in your activated virtual environment and 2) the working directory is q2-moshpit; run the following.

PR=151
git fetch origin pull/${PR}/head:pr-${PR}
git checkout pr-${PR}
  1. Let's get you some data to play with:
cd <i'll_test_this_here>
wget https://polybox.ethz.ch/index.php/s/WnZanIQECtwPEVu/download
  1. Test it out!
qiime moshpit evaluate-busco \
   --i-bins collated_mags.qza \
   --p-lineage-dataset bacteria_odb10 \
   --o-visualization busco.qzv \
   --verbose \
   --p-cpu 6
qiime tools view busco.qzv

@Sann5 Sann5 requested a review from misialq April 8, 2024 14:07
@Sann5 Sann5 self-assigned this Apr 8, 2024
@misialq
Copy link
Contributor

misialq commented May 1, 2024

Hey @Sann5, can you please rebase this PR on top of #148 to make it up-to-date?

@Sann5
Copy link
Contributor Author

Sann5 commented May 7, 2024

This PR was replaced by #159

@Sann5 Sann5 deleted the busco_w_feature_data_iss_111 branch May 8, 2024 09:52
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

ENH: allow FeatureData[MAG] as input to the evaluate-busco action
2 participants