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BUG: ParseError when running eggnog-hmmer-search #207

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DorielaGrabocka opened this issue Sep 24, 2024 · 0 comments
Open

BUG: ParseError when running eggnog-hmmer-search #207

DorielaGrabocka opened this issue Sep 24, 2024 · 0 comments
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@DorielaGrabocka
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Describe the bug
When running eggnog-hmmer-search, a ParseError is raised indicating a mismatch between the expected and actual number of columns for the output feature table.

To Reproduce
Steps to reproduce the behavior:

  1. Execute the command: qiime moshpit eggnog-hmmer-search --i-seed-alignments hmmr_db_2/seed_alignments.qza --i-idmap hmmr_db_2/idmap.qza --i-pressed-hmm-db hmmr_db_2/pressed_hmm_db.qza --i-sequences q2-moshpit/samples/mags.qza --o-eggnog-hits hits.qza --o-table table.qza --p-num-cpus 7 --p-num-partitions 4 --parallel --verbose
  2. Check the output in the console
  3. See the error

Screenshots
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Please complete the following information:

  • OS: Linux Subsystem for Windows
  • QIIME 2 version: 2024.2

Error log: check attached file.
moshpit_hmmer_search_error_log.txt

@DorielaGrabocka DorielaGrabocka added the bug Something isn't working label Sep 24, 2024
@DorielaGrabocka DorielaGrabocka changed the title BUG: ParseError when running eggnoh-hmmer-search BUG: ParseError when running eggnog-hmmer-search Sep 24, 2024
@DorielaGrabocka DorielaGrabocka self-assigned this Dec 13, 2024
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