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ENH: add action to transfer EggNOG annotations from annotated MAGs to the dereplicated MAGs #180

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misialq opened this issue Jun 20, 2024 · 0 comments
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enhancement New feature or request

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misialq commented Jun 20, 2024

It would be great to have a new action which can take SampleData[BLAST6], FeatureData[Frequency] and FeatureData[NOG] generated from SampleData[MAGs] and "transfer" the annotations to the dereplicated MAGs (FeatureData[MAG]) so that I don't have to re-annotate those again (since they are only a subset of the original MAGs). The steps this would involve are:

  • filter SampleData[BLAST6] to only contains seed ortholog files for the dereplicated MAG set
  • filter FeatureData[Frequency] to only contain those same MAGs
  • filter FeatureData[MAG] to only contain the relevant annotation files
@misialq misialq added the enhancement New feature or request label Jun 20, 2024
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