diff --git a/.github/workflows/ci-dev.yaml b/.github/workflows/ci-dev.yaml index b11b03c1..484b8123 100644 --- a/.github/workflows/ci-dev.yaml +++ b/.github/workflows/ci-dev.yaml @@ -10,24 +10,3 @@ jobs: uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml@dev with: distro: metagenome - additional-reports-path: ./coverage.xml - additional-reports-name: coverage - - coverage: - needs: [ci] - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - - uses: actions/download-artifact@v4 - name: 'Fetch coverage from builds' - with: - name: ${{ needs.ci.outputs.additional-reports-name }} - path: ${{ needs.ci.outputs.additional-reports-path }} - - - uses: codecov/codecov-action@v4 - name: 'Upload coverage' - with: - fail_ci_if_error: true - env: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/q2-ci.yaml b/.github/workflows/q2-ci.yaml index 206677b9..fcbc000e 100644 --- a/.github/workflows/q2-ci.yaml +++ b/.github/workflows/q2-ci.yaml @@ -18,25 +18,3 @@ jobs: uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml@dev with: distro: metagenome - additional-reports-path: ./coverage.xml - additional-reports-name: coverage - - coverage: - needs: [ci] - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - - uses: actions/download-artifact@v4 - name: 'Fetch coverage from builds' - with: - name: ${{ needs.ci.outputs.additional-reports-name }} - path: ${{ needs.ci.outputs.additional-reports-path }} - - - uses: codecov/codecov-action@v4 - name: 'Upload coverage' - with: - fail_ci_if_error: true - verbose: true - env: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/ci/recipe/meta.yaml b/ci/recipe/meta.yaml index 4ea76e8b..d8f36865 100644 --- a/ci/recipe/meta.yaml +++ b/ci/recipe/meta.yaml @@ -42,13 +42,12 @@ requirements: test: requires: - - coverage - parameterized imports: - q2_moshpit - qiime2.plugins.moshpit commands: - - coverage run --rcfile ./repo/.coveragerc -m pytest && coverage xml -o coverage.xml + - pytest --pyargs q2_moshpit about: home: https://github.com/bokulich-lab/q2-moshpit