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Describe the bug
The documentation for the qiime assembly plugin lists 'meta' as an option for the flag --p-presets. When this option is used, the user receives an error message stating that meta is an invalid preset for megahit.
To Reproduce
Steps to reproduce the behavior:
Execute the command qiime assembly assemble-megahit with the flag --p-presets 'meta': qiime assembly assemble-megahit --i-seqs mysequences.qza --p-presets 'meta' --o-contigs mycontigs.qza --verbose
Read stdout and stderr output
Expected behavior
I thought 'meta' was a standard preset for metagenomic data in megahit which would produce a .qza artifact containing contigs,
Please complete the following information:
OS: Ubuntu 22.04.4 LTS
QIIME 2 version: 2024.5 Metagenome Distribution
Additional context
I encountered this error while working on the Euler cluster.
The text was updated successfully, but these errors were encountered:
Describe the bug
The documentation for the qiime assembly plugin lists 'meta' as an option for the flag --p-presets. When this option is used, the user receives an error message stating that meta is an invalid preset for megahit.
To Reproduce
Steps to reproduce the behavior:
qiime assembly assemble-megahit --i-seqs mysequences.qza --p-presets 'meta' --o-contigs mycontigs.qza --verbose
Expected behavior
I thought 'meta' was a standard preset for metagenomic data in megahit which would produce a .qza artifact containing contigs,
Please complete the following information:
Additional context
I encountered this error while working on the Euler cluster.
The text was updated successfully, but these errors were encountered: