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Automate identification of primers within samples #59

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lina-kim opened this issue Jun 2, 2023 · 0 comments

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enhancement nice to have

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lina-kim commented Jun 2, 2023 •

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Suggested strategy, courtesy of Nick:

Take E. coli K12 strain for primer position definitions > full-length gene > use RESCRIPt (which wraps VSEARCH) – use for trimming; can use to find position of alignment
Incorporate database of commonly used 16S primers
Consider entropy of first few bases? See alignment in first few segments?

lina-kim added enhancement nice to have labels

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