From 3bcb79274af6f4b4de1eb91e9a5ef20f10144f3d Mon Sep 17 00:00:00 2001
From: VinzentRisch <risch.vinzent@gmail.com>
Date: Tue, 20 Aug 2024 16:39:00 +0200
Subject: [PATCH] more lint

---
 rescript/plugin_setup.py      | 14 ++++++++------
 rescript/testing.py           | 15 ---------------
 rescript/tests/test_bv_brc.py |  4 ++--
 3 files changed, 10 insertions(+), 23 deletions(-)
 delete mode 100644 rescript/testing.py

diff --git a/rescript/plugin_setup.py b/rescript/plugin_setup.py
index 5f1393c..2f4101f 100644
--- a/rescript/plugin_setup.py
+++ b/rescript/plugin_setup.py
@@ -1301,15 +1301,16 @@
     outputs=[('metadata', ImmutableMetadata)],
     input_descriptions={},
     parameter_descriptions={
-        'data_type': 'BV-BCR data type. Check https://www.bv-brc.org/api/doc/ for '
-                     'documentation.',
-        'rql_query': 'Query in RQL format. Check https://www.bv-brc.org/api/doc/ for '
-                     'documentation.'
+        'data_type': 'BV-BCR data type. Check https://www.bv-brc.org/api/doc/ '
+                     'for documentation.',
+        'rql_query': 'Query in RQL format. Check '
+                     'https://www.bv-brc.org/api/doc/ for documentation.'
     },
     output_descriptions={
         'metadata': 'metadata'},
     name='Fetch BV-BCR metadata.',
-    description="Fetch BV-BCR metadata for a specific data type with an RQL query.",
+    description="Fetch BV-BCR metadata for a specific data type with an RQL "
+                "query.",
 )
 
 plugin.methods.register_function(
@@ -1364,7 +1365,8 @@
 
 },
     name='Fetch genome features from BV-BRC.',
-    description='Fetch DNA and protein sequences of genome features from BV-BRC.',
+    description='Fetch DNA and protein sequences of genome features from '
+                'BV-BRC.',
 )
 
 # Registrations
diff --git a/rescript/testing.py b/rescript/testing.py
deleted file mode 100644
index d4a63be..0000000
--- a/rescript/testing.py
+++ /dev/null
@@ -1,15 +0,0 @@
-import requests
-
-
-response = requests.get("https://www.bv-brc.org/api/genome_sequence/?in(genome_id,(224308.43))")
-
-# Raise an error if the request was not successful
-response.raise_for_status()
-
-# Load the response data as JSON
-data = response.json()
-
-# Count the number of entries in the JSON dictionary
-num_entries = len(data)
-
-print(num_entries)
\ No newline at end of file
diff --git a/rescript/tests/test_bv_brc.py b/rescript/tests/test_bv_brc.py
index a28afd3..929fee7 100644
--- a/rescript/tests/test_bv_brc.py
+++ b/rescript/tests/test_bv_brc.py
@@ -361,7 +361,7 @@ def test_fetch_metadata_bv_brc(self, mock_download_data,
         mock_metadata.return_value = mock_metadata_instance
 
         # Call the function
-        result = fetch_metadata_bv_brc(
+        fetch_metadata_bv_brc(
             data_type="genome",
             rql_query="genome_id=in(1,2)"
         )
@@ -405,7 +405,7 @@ def test_fetch_taxonomy_bv_brc(
         mock_download_data.return_value = mock_response
 
         # Prepare mocks for file output
-        with patch('builtins.open', unittest.mock.mock_open()) as mock_file:
+        with patch('builtins.open', unittest.mock.mock_open()):
             directory = fetch_taxonomy_bv_brc(
                 rql_query="taxon_id=in(taxon1,taxon2)",
                 ranks=['rank1', 'rank2'],