dbuild-macos.yml

name: macos ldc build
on: [push, pull_request]

jobs:
  macos-build:
    name: macos dub build
    strategy:
      matrix:
        os: [macos-latest]
        dc: [ldc-latest]

    runs-on: ${{ matrix.os }}
    steps:
      - uses: actions/checkout@v2
        with:
          submodules: recursive

      - name: Install D compiler
        uses: dlang-community/setup-dlang@v1
        with:
          compiler: ${{ matrix.dc }}

      - name: Install htslib deps
        run: |
            brew install xz autoconf automake cython
      - name: Get dhtslib commit
        id: get-dhtslib-commit
        run: echo "::set-output name=sha_short::$(git rev-parse --short :dhtslib)"

      - name: Cache dhtslib
        id: cache-dhtslib
        uses: actions/cache@v2
        with:
          path: dhtslib
          key: ${{ runner.os}}-dhtslib-${{ steps.get-dhtslib-commit.outputs.sha_short }}

      - name: Build htslib
        if: steps.cache-dhtslib.outputs.cache-hit != 'true'
        run: |
            cd dhtslib/htslib
            autoreconf -i
            ./configure
            make
      - name: Install htslib
        run: |
            cd dhtslib/htslib
            sudo make install
      - name: Setup additional test files
        run: |
            cd dhtslib/htslib
            cd test
            cd tabix
            bgzip -c gff_file.gff > gff_file.gff.gz
            tabix gff_file.gff.gz
            bgzip -c bed_file.bed > bed_file.bed.gz
            tabix bed_file.bed.gz
            bgzip -c vcf_file.vcf > vcf_file.vcf.gz
            tabix vcf_file.vcf.gz
      - name: Run tests
        run: dub build -b release
        env:
          LIBRARY_PATH: /usr/local/lib

      - name: fix binary and compress
        run: |
            install_name_tool -change /usr/local/lib/libhts.3.dylib @rpath/libhts.3.dylib recontig
            tar -czvf recontig.darwin-amd64.tar.gz recontig
      
      - name: upload osx artifact
        uses: actions/upload-artifact@v2
        with:
          name: recontig-osx
          path: recontig.darwin-amd64.tar.gz

  docker-build-and-release:
    name: release with static linux binary
    needs: macos-build
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && contains(github.ref, 'refs/tags/')
    steps:
      - name: Checkout
        uses: actions/checkout@v2

      - name: Get the tag
        id: get_version
        run: echo ::set-output name=VERSION::$(echo $GITHUB_REF | cut -d / -f 3 | sed 's/^v//')

      - name: Set up QEMU
        uses: docker/setup-qemu-action@v1

      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v1

      - name: Login to DockerHub
        uses: docker/login-action@v1 
        with:
          username: ${{ secrets.DOCKERHUB_USERNAME }}
          password: ${{ secrets.DOCKERHUB_TOKEN }}

      - name: Build and push recontig image
        id: docker_build_recontig
        uses: docker/build-push-action@v2
        with:
          file: ./build.dockerfile
          push: true
          tags: charesgregory/recontig:latest,charesgregory/recontig:${{ steps.get_version.outputs.VERSION }}

      - name: extract recontig binary
        uses: shrink/actions-docker-extract@v1
        id: extract
        with:
          image: charesgregory/recontig:latest
          path: /home/recontig/recontig
      
      - name: compress binary
        run: tar -czvf recontig.many-linux-x86_64.tar.gz ${{ steps.extract.outputs.destination }}/recontig

      - name: Download osx binary
        uses: actions/download-artifact@v2
        with:
          name: recontig-osx

      - name: Release
        uses: softprops/action-gh-release@v1
        with:
          files: recontig.many-linux-x86_64.tar.gz,recontig.darwin-amd64.tar.gz
          generate_release_notes: true
          draft: true

      # - name: Upload coverage
        # run: bash <(curl -s https://codecov.io/bash)