From 2b084f3150c5999c5004e98a80723a28e3e5fdd5 Mon Sep 17 00:00:00 2001 From: Wout Date: Wed, 1 Jul 2020 17:10:58 -0700 Subject: [PATCH] Remove accidentally committed file --- src/iPRG2012.mztab | 4200 -------------------------------------------- 1 file changed, 4200 deletions(-) delete mode 100644 src/iPRG2012.mztab diff --git a/src/iPRG2012.mztab b/src/iPRG2012.mztab deleted file mode 100644 index 9717e74..0000000 --- a/src/iPRG2012.mztab +++ /dev/null @@ -1,4200 +0,0 @@ -MTD mzTab-version 1.0.0 -MTD mzTab-mode Summary -MTD mzTab-type Identification -MTD mzTab-ID ANN-SoLo_iPRG2012.mztab -MTD title ANN-SoLo identification file "iPRG2012.mztab" -MTD description Identification results of file "iPRG2012.mgf" against spectral library file "human_yeast_targetdecoy.splib" -MTD software[1] [MS, MS:1001456, ANN-SoLo, 0.2.4] -MTD psm_search_engine_score[1] [MS, MS:1001143, search engine specific score for PSMs,] -MTD psm_search_engine_score[2] [MS, MS:1002354, PSM-level q-value,] -MTD ms_run[1]-format [MS, MS:1001062, Mascot MGF file,] -MTD ms_run[1]-location file:///home/wout/Projects/0_published/ann_solo/data/external/iprg2012/iPRG2012.mgf -MTD ms_run[1]-id_format [MS, MS:1000774, multiple peak list nativeID format,] -MTD fixed_mod[1] [MS, MS:1002453, No fixed modifications searched,] -MTD variable_mod[1] [MS, MS:1002454, No variable modifications searched,] -MTD false_discovery_rate [MS, MS:1002350, PSM-level global FDR, 0.01] -MTD software[1]-setting[0] resolution = None -MTD software[1]-setting[1] min_mz = 11 -MTD software[1]-setting[2] max_mz = 2010 -MTD software[1]-setting[3] remove_precursor = True -MTD software[1]-setting[4] remove_precursor_tolerance = 0 -MTD software[1]-setting[5] min_intensity = 0.01 -MTD software[1]-setting[6] min_peaks = 10 -MTD software[1]-setting[7] min_mz_range = 250 -MTD software[1]-setting[8] max_peaks_used = 50 -MTD software[1]-setting[9] max_peaks_used_library = 50 -MTD software[1]-setting[10] scaling = rank -MTD software[1]-setting[11] precursor_tolerance_mass = 20.0 -MTD software[1]-setting[12] precursor_tolerance_mode = ppm -MTD software[1]-setting[13] precursor_tolerance_mass_open = None -MTD software[1]-setting[14] precursor_tolerance_mode_open = None -MTD software[1]-setting[15] fragment_mz_tolerance = 0.02 -MTD software[1]-setting[16] allow_peak_shifts = False -MTD software[1]-setting[17] fdr = 0.01 -MTD software[1]-setting[18] fdr_tolerance_mass = 0.1 -MTD software[1]-setting[19] fdr_tolerance_mode = Da -MTD software[1]-setting[20] fdr_min_group_size = 20 -MTD software[1]-setting[21] mode = ann -MTD software[1]-setting[22] bin_size = 0.04 -MTD software[1]-setting[23] hash_len = 800 -MTD software[1]-setting[24] num_candidates = 1024 -MTD software[1]-setting[25] num_list = 256 -MTD software[1]-setting[26] num_probe = 128 -PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_ms_run[1]_cv_MS:1002217_decoy_peptide opt_ms_run[1]_num_candidates -PSM YGSTNTRGDNEGQR 26 352476 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5226878970861435 0.0003920031360250882 null 338.502 3 518.9029172533499 518.9012339 ms_run[1]:index=26 null null null null 0 44 -PSM LQEEERER 28 413738 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5519834011793137 0.0003920031360250882 null 339.959 2 544.7703392007506 544.7701803500001 ms_run[1]:index=28 null null null null 0 133 -PSM FTDTRKDEQER 34 247372 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5828983245883137 0.0 null 342.659 3 475.56270967340816 475.56367056666664 ms_run[1]:index=34 null null null null 0 74 -PSM ISKPQNFGEVQSR 51 301952 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.30057821422815323 0.007690399404614239 null 351.82 3 497.26696221207726 497.2634435666668 ms_run[1]:index=51 null null null null 0 120 -PSM SQGQINAARR 66 429328 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3244837522506714 0.004555198285101822 null 360.463 2 550.7984148161634 550.79960685 ms_run[1]:index=66 null null null null 0 236 -PSM VDAEGKVTK 70 244644 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5305814291350543 0.0003920031360250882 null 362.638 2 473.76262451409644 473.76383584999996 ms_run[1]:index=70 null null null null 0 174 -PSM SRGESDDSLNR 73 583482 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.6154148075729609 0.0 null 364.092 2 618.284791544721 618.28418235 ms_run[1]:index=73 null null null null 0 78 -PSM QQELIEK 78 178450 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3134304163977504 0.006183973202782788 null 367.012 2 444.2513017747405 444.24527885000003 ms_run[1]:index=78 null null null null 0 182 -PSM MVPTSDKGR 88 295998 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5680901575833559 0.0 null 370.73 2 495.7563753959889 495.75548784999995 ms_run[1]:index=88 null null null null 0 174 -PSM YNC[160]VQEFNK 89 546924 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.2929404987953603 0.009452253999030538 null 370.88 2 601.2601842961267 601.26895935 ms_run[1]:index=89 null null null null 0 36 -PSM LAEQAER 93 105836 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5271883588284254 0.0003920031360250882 null 371.957 2 408.7140684400179 408.71414584999997 ms_run[1]:index=93 null null null null 0 115 -PSM ARTPGQMQR 99 361290 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3365842718631029 0.0035802809143486644 null 372.557 2 522.7710975878061 522.7720043500001 ms_run[1]:index=99 null null null null 0 163 -PSM GSIDEQHPR 102 354392 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.6387361355591565 0.0 null 373.585 2 519.7524532020008 519.75179085 ms_run[1]:index=102 null null null null 0 113 -PSM RLEEATAR 107 244556 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.4182353504002094 0.0006961364427427776 null 375.166 2 473.25890663788243 473.25925185 ms_run[1]:index=107 null null null null 0 233 -PSM QVYENTQK 109 320752 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3982239253818989 0.0016589250165892503 null 375.466 2 505.256984418105 505.25109285 ms_run[1]:index=109 null null null null 0 154 -PSM KGNNTANATNSANTVQK 122 495092 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.7203494983114069 0.0 null 378.634 3 578.29178031502 578.2906095666666 ms_run[1]:index=122 null null null null 0 103 -PSM SRGESDDSLNR 123 114680 null 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0 107 -PSM FSSTAEAK 154 129474 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.49209193931892514 0.0003920031360250882 null 389.529 2 420.7121000666588 420.70852885 ms_run[1]:index=154 null null null null 0 71 -PSM KLTKDDPSQQATR 158 299530 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3842964068753645 0.0019348597226701064 null 390.229 3 496.5996673380782 496.5986039 ms_run[1]:index=158 null null null null 0 87 -PSM ATEEQLK 159 107192 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3208942599594593 0.005003950487226758 null 390.766 2 409.71344579493643 409.71635435 ms_run[1]:index=159 null null null null 0 89 -PSM AKEIAQQEK 171 361280 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3135736919939518 0.006183973202782788 null 392.658 2 522.7897924732629 522.7878423500001 ms_run[1]:index=171 null null null null 0 169 -PSM VEDQKVVDK 172 381400 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5545425312593579 0.0003920031360250882 null 392.808 2 530.2873129021368 530.28767485 ms_run[1]:index=172 null null null null 0 270 -PSM SRGESDDSLNR 181 114680 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.3748912177979946 0.002319512902290519 null 395.159 3 412.5247038131521 412.52521490000004 ms_run[1]:index=181 null null null null 0 12 -PSM SRGESDDSLNR 182 114680 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.45947134122252464 0.0003920031360250882 null 395.309 3 412.52478577695274 412.52521490000004 ms_run[1]:index=182 null null null null 0 12 -PSM KM[147]KDTDSEEEIR 195 305360 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.48752402141690254 0.0003920031360250882 null 397.409 3 499.5698850735149 499.56809244333334 ms_run[1]:index=195 null null null null 0 56 -PSM IMRDPAK 199 120272 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.6358335110126063 0.0 null 398.274 2 415.73128786718127 415.73128435 ms_run[1]:index=199 null null null null 0 155 -PSM KTC[160]SSC[160]GYPAAK 207 176882 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.5838305637007579 0.0 null 399.696 3 443.8716663778942 443.86904956666666 ms_run[1]:index=207 null null null null 0 23 -PSM KTC[160]SSC[160]GYPSAK 208 189562 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.4519066596403718 0.0003920031360250882 null 399.846 3 449.2023381867084 449.20068756666666 ms_run[1]:index=208 null null null null 0 29 -PSM LHQDYK 223 95620 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null [MS, MS:1001456, ANN SoLo,] 0.33270045230165124 0.0035802809143486644 null 402.439 2 402.2119517832717 402.20595685 ms_run[1]:index=223 null null null null 0 127 -PSM HGQSEWNEK 228 446146 null file:///home/wout/Projects/0_published/ann_solo/data/interim/iprg2012/human_yeast_targetdecoy.splib null 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