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Residue-wise lDDT of an AlphaFold DB protein against a reference from PDB #698

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padix-key opened this issue Nov 8, 2024 · 0 comments
Open
7 tasks

Residue-wise lDDT of an AlphaFold DB protein against a reference from PDB #698

padix-key opened this issue Nov 8, 2024 · 0 comments
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example idea An idea for a new example in the gallery good first issue

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This example should fulfill the following tasks:

  • Download a reference protein structure from PDB
  • Download a corresponding model protein structure from AlphaFold DB
  • Superimpose structures with align_homologs()
  • Plot actual residue-wise lDDT (computed with Biotite) against pLDDT (stored in B-factors)
  • Create a molecular visualization with PyMOL encoding the lDDT using color

This example requires the following features to be implemented first
@padix-key padix-key added good first issue example idea An idea for a new example in the gallery labels Nov 8, 2024
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