From e0157cd9806672f0107d8976886c1657ad8807c9 Mon Sep 17 00:00:00 2001
From: GitHub Action <action@github.com>
Date: Sat, 30 Jul 2022 14:05:05 +0000
Subject: [PATCH] =?UTF-8?q?=F0=9F=93=AE=20Automatically=20update?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 docs/_data/curation.yml                       |      2 +
 docs/img/bioregistry_coverage.svg             |   2359 +-
 docs/img/bioregistry_coverage_bar.svg         |   1821 +-
 docs/img/bioregistry_coverage_bar_short.svg   |   1464 +-
 docs/img/external_overlap.svg                 |  25569 +--
 docs/img/has_attribute.svg                    |      2 +-
 docs/img/licenses.svg                         |      2 +-
 docs/img/providers.svg                        |      2 +-
 docs/img/regex_report.svg                     |      2 +-
 docs/img/xrefs.svg                            |    455 +-
 exports/contexts/obo_synonyms.context.jsonld  |      1 +
 exports/contexts/obo_synonyms.context.ttl     |      1 +
 exports/metaregistry/metaregistry.tsv         |      1 +
 exports/metaregistry/metaregistry.yml         |     41 +
 exports/rdf/bioregistry.jsonld                | 121799 ++++++++-------
 exports/rdf/bioregistry.nt                    |  63842 ++++----
 exports/rdf/bioregistry.ttl                   |    659 +-
 exports/rdf/schema.jsonld                     |    158 +-
 exports/rdf/schema.nt                         |    116 +-
 exports/registry/registry.json                |    273 +-
 exports/registry/registry.tsv                 |   2840 +-
 exports/registry/registry.yml                 |    125 +
 exports/sssom/bioregistry.sssom.tsv           |    126 +-
 exports/sssom/bioregistry.sssom.yml           |      1 +
 exports/tables/comparison_goveranance.tex     |      1 +
 exports/tables/comparison_goveranance.tsv     |      1 +
 exports/tables/comparison_metadata.tex        |      1 +
 exports/tables/comparison_metadata.tsv        |      1 +
 exports/tables/summary.tex                    |     12 +-
 src/bioregistry/data/bioregistry.json         |   1131 +-
 .../data/external/agroportal/raw.json         |     27 +-
 .../data/external/re3data/curation.tsv        |     73 +-
 32 files changed, 114526 insertions(+), 108382 deletions(-)

diff --git a/docs/_data/curation.yml b/docs/_data/curation.yml
index 46db77092..675bca09f 100644
--- a/docs/_data/curation.yml
+++ b/docs/_data/curation.yml
@@ -1203,6 +1203,8 @@ prefix_xrefs:
   name: OntoBee
 - metaprefix: prefixcommons
   name: Prefix Commons
+- metaprefix: re3data
+  name: re3data
 - metaprefix: uniprot
   name: UniProt
 - metaprefix: wikidata
diff --git a/docs/img/bioregistry_coverage.svg b/docs/img/bioregistry_coverage.svg
index 7a7123e72..0e8a32169 100644
--- a/docs/img/bioregistry_coverage.svg
+++ b/docs/img/bioregistry_coverage.svg
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     <!-- 16 external registries -->
-    <g style="fill: #262626" transform="translate(388.746074 103.632446)scale(0.12 -0.12)">
+    <g style="fill: #262626" transform="translate(371.236498 104.071954)scale(0.12 -0.12)">
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@@ -1610,7 +1627,7 @@ z
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-  <g id="text_46">
+  <g id="text_47">
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@@ -1753,7 +1770,7 @@ z
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diff --git a/exports/contexts/obo_synonyms.context.jsonld b/exports/contexts/obo_synonyms.context.jsonld
index 3db929dae..4c3d45bfe 100644
--- a/exports/contexts/obo_synonyms.context.jsonld
+++ b/exports/contexts/obo_synonyms.context.jsonld
@@ -286,6 +286,7 @@
         "MetaCyc": "https://metacyc.org/compound?orgid=META&id=",
         "MmusDv": "http://purl.obolibrary.org/obo/MmusDv_",
         "NBO": "http://purl.obolibrary.org/obo/NBO_",
+        "NCBI Taxonomy": "http://purl.obolibrary.org/obo/NCBITaxon_",
         "NCBIGene": "https://www.ncbi.nlm.nih.gov/gene/",
         "NCBIProtein": "https://www.ncbi.nlm.nih.gov/protein/",
         "NCBITaxon": "http://purl.obolibrary.org/obo/NCBITaxon_",
diff --git a/exports/contexts/obo_synonyms.context.ttl b/exports/contexts/obo_synonyms.context.ttl
index 017f118a9..fc77ba9de 100644
--- a/exports/contexts/obo_synonyms.context.ttl
+++ b/exports/contexts/obo_synonyms.context.ttl
@@ -288,6 +288,7 @@
     [ sh:prefix "MetaCyc" ; sh:namespace "https://metacyc.org/compound?orgid=META&id=" ; sh:pattern "^[A-Za-z0-9+_.%-:]+$" ],
     [ sh:prefix "MmusDv" ; sh:namespace "http://purl.obolibrary.org/obo/MmusDv_" ; sh:pattern "^\d{7}$" ],
     [ sh:prefix "NBO" ; sh:namespace "http://purl.obolibrary.org/obo/NBO_" ; sh:pattern "^\d{7}$" ],
+    [ sh:prefix "NCBI Taxonomy" ; sh:namespace "http://purl.obolibrary.org/obo/NCBITaxon_" ; sh:pattern "^\d+$" ],
     [ sh:prefix "NCBIGene" ; sh:namespace "https://www.ncbi.nlm.nih.gov/gene/" ; sh:pattern "^\d+$" ],
     [ sh:prefix "NCBIProtein" ; sh:namespace "https://www.ncbi.nlm.nih.gov/protein/" ; sh:pattern "^(\w+\d+(\.\d+)?)|(NP_\d+)$" ],
     [ sh:prefix "NCBITaxon" ; sh:namespace "http://purl.obolibrary.org/obo/NCBITaxon_" ; sh:pattern "^\d+$" ],
diff --git a/exports/metaregistry/metaregistry.tsv b/exports/metaregistry/metaregistry.tsv
index 61822ea8a..37e3e8b99 100644
--- a/exports/metaregistry/metaregistry.tsv
+++ b/exports/metaregistry/metaregistry.tsv
@@ -20,5 +20,6 @@ ols	Ontology Lookup Service	https://www.ebi.ac.uk/ols	The Ontology Lookup Servic
 ontobee	OntoBee	http://www.ontobee.org/	Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis.		AGRO	Yongqun Oliver He	yongqunh@med.umich.edu	yongqunh	http://www.ontobee.org/ontology/$1	http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2	lookup
 prefixcc	Prefix.cc	https://prefix.cc/	A web-developer centric archive of prefixes and URI prefixes	https://prefix.cc/context.jsonld	foaf	Richard Cyganiak	richard@cyganiak.de	cygri	https://prefix.cc/$1		
 prefixcommons	Prefix Commons	https://prefixcommons.org	A registry of commonly used prefixes in the life sciences and linked data	https://raw.githubusercontent.com/prefixcommons/data-ingest/master/yml/lsregistry.yml	CHEBI	Michel Dumontier	michel.dumontier@gmail.com	micheldumontier	https://prefixcommons.org/?q=$1		
+re3data	Registry of Research Data Repositories	https://www.re3data.org	Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.		r3d100010772	Michael Witt	mwitt@purdue.edu	mwittin	https://www.re3data.org/repository/$1		
 uniprot	UniProt Cross-ref database	https://www.uniprot.org/database/	The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.	https://www.uniprot.org/database/?format=rdf	0174	Alex Bateman	agb@ebi.ac.uk	bateman-research	https://www.uniprot.org/database/DB-$1		
 wikidata	Wikidata Property	https://www.wikidata.org	An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries.		P683	WikiData Support	info@wikidata.org		https://www.wikidata.org/wiki/Property:$1		
diff --git a/exports/metaregistry/metaregistry.yml b/exports/metaregistry/metaregistry.yml
index 1b90d84db..3a6b118ec 100644
--- a/exports/metaregistry/metaregistry.yml
+++ b/exports/metaregistry/metaregistry.yml
@@ -867,6 +867,47 @@ prefixcommons:
   name: Prefix Commons
   prefix: prefixcommons
   provider_uri_format: https://prefixcommons.org/?q=$1
+re3data:
+  availability:
+    alternate_providers: missing
+    contact: present
+    description: required
+    example: missing
+    fair: false
+    fair_note: The API for Re3data does not provide a bulk download
+    homepage: required
+    license: present
+    name: required
+    pattern: missing
+    provider: missing
+    search: true
+    synonyms: missing
+    version: missing
+  bioregistry_prefix: re3data
+  contact:
+    email: mwitt@purdue.edu
+    github: mwittin
+    name: Michael Witt
+    orcid: 0000-0003-4221-7956
+  description: Re3data is a global registry of research data repositories that covers
+    research data repositories from different academic disciplines.
+  example: r3d100010772
+  governance:
+    accepts_external_contributions: true
+    comments: null
+    curates: true
+    curation: opaque-review
+    imports: false
+    public_version_control: false
+    review_team: private
+    scope: general
+    status: active
+  homepage: https://www.re3data.org
+  license: CC 0
+  name: Registry of Research Data Repositories
+  prefix: re3data
+  provider_uri_format: https://www.re3data.org/repository/$1
+  short_name: re3data
 uniprot:
   availability:
     alternate_providers: missing
diff --git a/exports/rdf/bioregistry.jsonld b/exports/rdf/bioregistry.jsonld
index 3b91cf122..b7c36b335 100644
--- a/exports/rdf/bioregistry.jsonld
+++ b/exports/rdf/bioregistry.jsonld
@@ -34,6 +34,7 @@
     "prefixcommons": "https://prefixcommons.org/?q=",
     "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
     "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+    "re3data": "https://www.re3data.org/repository/",
     "uniprot.resource": "https://www.uniprot.org/database/DB-",
     "wikidata": "https://www.wikidata.org/wiki/Property:",
     "xml": "http://www.w3.org/XML/1998/namespace",
@@ -41,1890 +42,1893 @@
   },
   "@graph": [
     {
-      "@id": "https://bioregistry.io/metaregistry/cellosaurus/NHCDR",
+      "@id": "https://bioregistry.io/registry/opmi",
+      "@type": "https://bioregistry.io/schema/#0000001",
+      "http://purl.org/dc/elements/1.1/description": "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/cellosaurus"
+        "@id": "https://bioregistry.io/metaregistry/bioregistry"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#label": {
+        "@value": "Ontology of Precision Medicine and Investigation"
+      },
+      "http://www.w3.org/2004/02/skos/core#exactMatch": [
+        {
+          "@id": "https://bioportal.bioontology.org/ontologies/OPMI"
+        },
+        {
+          "@id": "http://www.obofoundry.org/ontology/opmi"
+        },
+        {
+          "@id": "http://www.ontobee.org/ontology/OPMI"
+        },
+        {
+          "@id": "https://www.ebi.ac.uk/ols/ontologies/opmi"
+        },
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       "http://purl.org/dc/terms/isPartOf": {
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+        "@id": "https://bioregistry.io/metaregistry/obofoundry"
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     {
-      "@id": "https://bioregistry.io/metaregistry/cellosaurus/JCRB",
+      "@id": "http://aber-owl.net/ontology/XCO",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/cellosaurus"
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       "http://www.w3.org/2004/02/skos/core#exactMatch": [
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-          "@id": "https://www.ebi.ac.uk/ols/ontologies/ecto"
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         {
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+          "@id": "http://aber-owl.net/ontology/ECTO"
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         },
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-          "@id": "https://bioregistry.io/metaregistry/biolink/ECTO"
+          "@id": "https://bioportal.bioontology.org/ontologies/ECTO"
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       "http://xmlns.com/foaf/0.1/homepage": "https://github.com/EnvironmentOntology/environmental-exposure-ontology",
@@ -1964,43 +1968,43 @@
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-      "https://bioregistry.io/schema/#0000012": false,
-      "https://bioregistry.io/schema/#0000018": {
-        "@id": "https://bioregistry.io/registry/scdo"
-      },
+      "https://bioregistry.io/schema/#0000012": true,
       "https://bioregistry.io/schema/#0000019": {
-        "@id": "https://orcid.org/0000-0002-9415-5104"
-      }
-    },
-    {
-      "@id": "https://bioregistry.io/metaregistry/biolink/ECTO",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/biolink"
+        "@id": "_:Nd577d5dcc8bb4123af3c3acb82115068"
       }
     },
     {
-      "@id": "https://bioregistry.io/metaregistry/biocontext/MINID",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/biocontext"
+      "@id": "_:Nd577d5dcc8bb4123af3c3acb82115068",
+      "http://www.w3.org/2000/01/rdf-schema#label": {
+        "@value": "chEBI"
       }
     },
     {
-      "@id": "https://www.ebi.ac.uk/ols/ontologies/bto",
+      "@id": "https://bioregistry.io/metaregistry/n2t/microscope",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/ols"
+        "@id": "https://bioregistry.io/metaregistry/n2t"
       }
     },
     {
-      "@id": "https://fairsharing.org/FAIRsharing.dt9z89",
+      "@id": "https://bioregistry.io/metaregistry/biocontext/ZP",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/fairsharing"
+        "@id": "https://bioregistry.io/metaregistry/biocontext"
       }
     },
     {
-      "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS",
+      "@id": "https://bioregistry.io/metaregistry/n2t/sgn",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/biocontext"
+        "@id": "https://bioregistry.io/metaregistry/n2t"
       }
     },
     {
-      "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS",
+      "@id": "http://www.obofoundry.org/ontology/clo",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/biocontext"
+        "@id": "https://bioregistry.io/metaregistry/obofoundry"
       }
     },
     {
-      "@id": "https://bioregistry.io/registry/aop.stressor",
+      "@id": "https://bioregistry.io/registry/ncro",
       "@type": "https://bioregistry.io/schema/#0000001",
-      "http://purl.org/dc/elements/1.1/description": "International repository of Adverse Outcome Pathways.",
+      "http://purl.org/dc/elements/1.1/description": "An ontology for non-coding RNA, both of biological origin, and engineered.",
       "http://purl.org/dc/terms/isPartOf": {
         "@id": "https://bioregistry.io/metaregistry/bioregistry"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "AOPWiki (Stressor)"
+        "@value": "Non-Coding RNA Ontology"
       },
       "http://www.w3.org/2004/02/skos/core#exactMatch": [
         {
-          "@id": "https://registry.identifiers.org/registry/aop.stressor"
+          "@id": "http://www.obofoundry.org/ontology/ncro"
         },
         {
-          "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR"
+          "@id": "http://aber-owl.net/ontology/NCRO"
         },
         {
-          "@id": "https://bioregistry.io/metaregistry/n2t/aop.stressor"
-        }
-      ],
-      "http://xmlns.com/foaf/0.1/homepage": "https://aopwiki.org/",
-      "https://bioregistry.io/schema/#0000005": "9",
-      "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/stressors/$1",
-      "https://bioregistry.io/schema/#0000008": "^\\d+$",
-      "https://bioregistry.io/schema/#0000012": false
-    },
-    {
-      "@id": "https://bioregistry.io/registry/iev",
-      "@type": "https://bioregistry.io/schema/#0000001",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/bioregistry"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Event (INOH pathway ontology)"
-      },
-      "http://www.w3.org/2004/02/skos/core#exactMatch": [
+          "@id": "http://www.ontobee.org/ontology/NCRO"
+        },
         {
-          "@id": "http://www.obofoundry.org/ontology/iev"
+          "@id": "https://www.ebi.ac.uk/ols/ontologies/ncro"
         },
         {
-          "@id": "https://bioregistry.io/metaregistry/biocontext/IEV"
+          "@id": "https://fairsharing.org/FAIRsharing.vppyga"
         },
         {
-          "@id": "https://prefixcommons.org/?q=iev"
+          "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO"
+        },
+        {
+          "@id": "https://bioportal.bioontology.org/ontologies/NCRO"
         }
       ],
-      "http://xmlns.com/foaf/0.1/homepage": "http://www.inoh.org",
-      "https://bioregistry.io/schema/#0000005": "0000000",
-      "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IEV_$1",
+      "http://xmlns.com/foaf/0.1/homepage": "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology",
+      "https://bioregistry.io/schema/#0000005": "0002927",
+      "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCRO_$1",
       "https://bioregistry.io/schema/#0000008": "^\\d{7}$",
-      "https://bioregistry.io/schema/#0000012": true
-    },
-    {
-      "@id": "https://bioregistry.io/metaregistry/go/WBbt",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/go"
-      }
-    },
-    {
-      "@id": "https://fairsharing.org/FAIRsharing.m40bhw",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/fairsharing"
+      "https://bioregistry.io/schema/#0000012": false,
+      "https://bioregistry.io/schema/#0000019": {
+        "@id": "https://orcid.org/0000-0003-2408-2883"
       }
     },
     {
-      "@id": "https://registry.identifiers.org/registry/bgee.stage",
+      "@id": "https://bioregistry.io/metaregistry/biocontext/CPC",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/miriam"
+        "@id": "https://bioregistry.io/metaregistry/biocontext"
       }
     },
     {
-      "@id": "https://bioregistry.io/registry/ctd",
-      "http://purl.org/dc/terms/hasPart": [
-        {
-          "@id": "https://bioregistry.io/registry/ctd.gene"
-        },
-        {
-          "@id": "https://bioregistry.io/registry/ctd.chemical"
-        },
-        {
-          "@id": "https://bioregistry.io/registry/ctd.disease"
-        }
-      ]
-    },
-    {
-      "@id": "https://registry.identifiers.org/registry/cadsr",
+      "@id": "http://aber-owl.net/ontology/HP_O",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/miriam"
+        "@id": "https://bioregistry.io/metaregistry/aberowl"
       }
     },
     {
-      "@id": "https://bioregistry.io/metaregistry/go/GR_PROTEIN",
+      "@id": "https://prefixcommons.org/?q=cgd",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/go"
+        "@id": "https://bioregistry.io/metaregistry/prefixcommons"
       }
     },
     {
-      "@id": "https://bioportal.bioontology.org/ontologies/ECO",
+      "@id": "https://bioregistry.io/metaregistry/n2t/yetfasco",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/bioportal"
+        "@id": "https://bioregistry.io/metaregistry/n2t"
       }
     },
     {
-      "@id": "https://bioregistry.io/registry/co_357",
+      "@id": "https://bioregistry.io/registry/htn",
       "@type": "https://bioregistry.io/schema/#0000001",
-      "http://purl.org/dc/elements/1.1/description": "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.",
+      "http://purl.org/dc/elements/1.1/description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines",
       "http://purl.org/dc/terms/isPartOf": {
         "@id": "https://bioregistry.io/metaregistry/bioregistry"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Woody Plant Ontology ontology"
+        "@value": "Hypertension Ontology"
       },
       "http://www.w3.org/2004/02/skos/core#exactMatch": [
         {
-          "@id": "https://fairsharing.org/FAIRsharing.2b04ae"
+          "@id": "https://bioportal.bioontology.org/ontologies/HTN"
         },
         {
-          "@id": "https://www.cropontology.org/ontology/CO_357"
+          "@id": "http://www.obofoundry.org/ontology/htn"
         },
         {
-          "@id": "http://agroportal.lirmm.fr/ontologies/CO_357"
+          "@id": "http://aber-owl.net/ontology/HTN"
         },
         {
-          "@id": "https://www.ebi.ac.uk/ols/ontologies/co_357"
+          "@id": "https://www.ebi.ac.uk/ols/ontologies/htn"
+        },
+        {
+          "@id": "http://www.ontobee.org/ontology/HTN"
         }
       ],
-      "http://xmlns.com/foaf/0.1/homepage": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology",
-      "https://bioregistry.io/schema/#0000005": "1000290",
-      "https://bioregistry.io/schema/#0000006": "https://www.cropontology.org/rdf/CO_357:$1",
-      "https://bioregistry.io/schema/#0000008": "^\\d+$",
-      "https://bioregistry.io/schema/#0000012": false
-    },
-    {
-      "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/miriam"
-      }
-    },
-    {
-      "@id": "https://registry.identifiers.org/registry/hgmd",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/miriam"
+      "http://xmlns.com/foaf/0.1/homepage": "https://github.com/aellenhicks/htn_owl",
+      "https://bioregistry.io/schema/#0000005": "00000014",
+      "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HTN_$1",
+      "https://bioregistry.io/schema/#0000008": "^\\d{8}$",
+      "https://bioregistry.io/schema/#0000012": false,
+      "https://bioregistry.io/schema/#0000019": {
+        "@id": "https://orcid.org/0000-0002-1795-5570"
       }
     },
     {
-      "@id": "https://registry.identifiers.org/registry/sdbs",
+      "@id": "https://bioregistry.io/metaregistry/n2t/prodom",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/miriam"
+        "@id": "https://bioregistry.io/metaregistry/n2t"
       }
     },
     {
-      "@id": "http://agroportal.lirmm.fr/ontologies/BCO",
+      "@id": "https://bioportal.bioontology.org/ontologies/EFO",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/agroportal"
+        "@id": "https://bioregistry.io/metaregistry/bioportal"
       }
     },
     {
-      "@id": "https://bioregistry.io/registry/miapa",
-      "@type": "https://bioregistry.io/schema/#0000001",
-      "http://purl.org/dc/elements/1.1/description": "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.",
+      "@id": "http://www.ontobee.org/ontology/MMO",
       "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/bioregistry"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Minimum Anformation About a Phylogenetic Analysis Ontology"
-      },
-      "http://www.w3.org/2004/02/skos/core#exactMatch": [
-        {
-          "@id": "https://bioportal.bioontology.org/ontologies/MIAPA"
-        },
-        {
-          "@id": "https://www.ebi.ac.uk/ols/ontologies/miapa"
-        },
-        {
-          "@id": "http://www.obofoundry.org/ontology/miapa"
-        },
-        {
-          "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA"
-        },
-        {
-          "@id": "http://aber-owl.net/ontology/MIAPA"
-        },
-        {
-          "@id": "https://fairsharing.org/FAIRsharing.ca48xs"
-        },
-        {
-          "@id": "http://www.ontobee.org/ontology/MIAPA"
-        }
-      ],
-      "http://xmlns.com/foaf/0.1/homepage": "http://www.evoio.org/wiki/MIAPA",
-      "https://bioregistry.io/schema/#0000005": "0000010",
-      "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIAPA_$1",
-      "https://bioregistry.io/schema/#0000008": "^\\d{7}$",
-      "https://bioregistry.io/schema/#0000012": false,
-      "https://bioregistry.io/schema/#0000019": {
-        "@id": "https://orcid.org/0000-0001-9107-0714"
+        "@id": "https://bioregistry.io/metaregistry/ontobee"
       }
     },
     {
-      "@id": "https://registry.identifiers.org/registry/ecoliwiki",
+      "@id": "https://registry.identifiers.org/registry/genpept",
       "http://purl.org/dc/terms/isPartOf": {
         "@id": "https://bioregistry.io/metaregistry/miriam"
       }
-    },
-    {
-      "@id": "https://bioregistry.io/registry/aphidbase.transcript",
-      "@type": "https://bioregistry.io/schema/#0000001",
-      "http://purl.org/dc/elements/1.1/description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.",
-      "http://purl.org/dc/terms/isPartOf": {
-        "@id": "https://bioregistry.io/metaregistry/bioregistry"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "AphidBase Transcript"
-      },
-      "http://www.w3.org/2004/02/skos/core#exactMatch": [
-        {
-          "@id": "https://bioregistry.io/metaregistry/n2t/aphidbase.transcript"
-        },
-        {
-          "@id": "https://registry.identifiers.org/registry/aphidbase.transcript"
-        },
-        {
-          "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT"
-        }
-      ],
-      "http://xmlns.com/foaf/0.1/homepage": "http://www.aphidbase.com/aphidbase",
-      "https://bioregistry.io/schema/#0000005": "ACYPI000159",
-      "https://bioregistry.io/schema/#0000006": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1",
-      "https://bioregistry.io/schema/#0000008": "^ACYPI\\d{6}(-RA)?$",
-      "https://bioregistry.io/schema/#0000012": false
     }
   ]
 }
\ No newline at end of file
diff --git a/exports/rdf/bioregistry.nt b/exports/rdf/bioregistry.nt
index cc631075c..3b28d35d7 100644
--- a/exports/rdf/bioregistry.nt
+++ b/exports/rdf/bioregistry.nt
@@ -1,31859 +1,32239 @@
-<https://bioregistry.io/registry/scdo> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://fairsharing.org/FAIRsharing.kkq6pw> .
-<http://edamontology.org/data_2325> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/edam> .
-<https://bioregistry.io/metaregistry/aberowl> <http://purl.org/dc/terms/hasPart> <http://aber-owl.net/ontology/CARO> .
-<https://bioregistry.io/registry/cameo> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioregistry.io/metaregistry/biocontext/CAMEO> .
-<https://bioregistry.io/registry/fix> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/bioregistry> .
-<https://bioregistry.io/metaregistry/n2t/refseq> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/n2t> .
-<https://bioregistry.io/registry/covoc> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/bioregistry> .
-<https://bioregistry.io/registry/xco> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioportal.bioontology.org/ontologies/XCO> .
-<https://registry.identifiers.org/registry/iedb> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/miriam> .
-<https://bioregistry.io/registry/ogsf> <http://www.w3.org/2004/02/skos/core#exactMatch> <http://www.ontobee.org/ontology/OGSF> .
-<https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/biocontext> .
-<https://registry.identifiers.org/registry/biomodels.kisao> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/miriam> .
-<https://bioregistry.io/registry/vmhgene> <http://purl.org/dc/elements/1.1/description> "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^<http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/metaregistry/fairsharing> <http://purl.org/dc/terms/hasPart> <https://fairsharing.org/FAIRsharing.cp0ybc> .
-<https://bioregistry.io/registry/ssbd.dataset> <http://purl.org/dc/elements/1.1/description> "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^<http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/metaregistry/biolink/COG> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/biolink> .
-<https://bioregistry.io/registry/atc> <http://www.w3.org/2000/01/rdf-schema#label> "Anatomical Therapeutic Chemical Classification System" .
-<https://bioregistry.io/metaregistry/ols> <http://purl.org/dc/terms/hasPart> <https://www.ebi.ac.uk/ols/ontologies/clo> .
-<https://bioregistry.io/registry/co_348> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://fairsharing.org/FAIRsharing.af7a2d> .
-<https://bioregistry.io/registry/zea> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/registry/dictybase.est> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/metaregistry/biolink> <http://purl.org/dc/terms/hasPart> <https://bioregistry.io/metaregistry/biolink/mmmp.biomaps> .
-<https://bioregistry.io/registry/phosphopoint.protein> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/bioregistry> .
-<https://bioregistry.io/registry/topdb> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/bioregistry> .
-<https://bioregistry.io/registry/merops.entry> <http://www.w3.org/2004/02/skos/core#exactMatch> <http://edamontology.org/data_2629> .
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-<https://orcid.org/0000-0001-9125-4337> <http://www.w3.org/2000/01/rdf-schema#label> "Francesco Vitali" .
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-<https://bioregistry.io/registry/epcc> <http://www.w3.org/2000/01/rdf-schema#label> "European Paediatric Cardiac Codes" .
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-<https://bioregistry.io/metaregistry/biocontext/DEPOD> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/biocontext> .
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-<https://bioregistry.io/registry/dermo> <https://bioregistry.io/schema/#0000012> "false"^^<http://www.w3.org/2001/XMLSchema#boolean> .
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-<https://bioregistry.io/registry/gwascentral.marker> <http://www.w3.org/2000/01/rdf-schema#label> "GWAS Central Marker" .
-<https://bioregistry.io/metaregistry/bioregistry> <http://purl.org/dc/terms/hasPart> <https://bioregistry.io/registry/wwf.ecoregion> .
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-<https://bioregistry.io/registry/co_322> <http://www.w3.org/2000/01/rdf-schema#label> "Maize ontology" .
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-<https://bioregistry.io/registry/cpga> <https://bioregistry.io/schema/#0000012> "true"^^<http://www.w3.org/2001/XMLSchema#boolean> .
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-<https://bioregistry.io/metaregistry/n2t> <http://purl.org/dc/terms/hasPart> <https://bioregistry.io/metaregistry/n2t/cco> .
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+<https://bioregistry.io/registry/biotools> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://fairsharing.org/FAIRsharing.63520c> .
+<https://bioregistry.io/registry/co_325> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://www.ebi.ac.uk/ols/ontologies/co_325> .
+<https://bioregistry.io/registry/mco> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioportal.bioontology.org/ontologies/MCO> .
+<http://www.obofoundry.org/ontology/cdno> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/obofoundry> .
+<https://bioregistry.io/registry/drugbankv4.target> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET> .
+<https://bioregistry.io/metaregistry/miriam> <http://purl.org/dc/terms/hasPart> <https://registry.identifiers.org/registry/mmp.db> .
+<https://bioregistry.io/registry/opb> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioregistry.io/metaregistry/biocontext/OPB> .
+<https://bioregistry.io/registry/emdb> <http://www.w3.org/2004/02/skos/core#exactMatch> <http://edamontology.org/data_1146> .
+<https://registry.identifiers.org/registry/proteomicsdb.peptide> <http://purl.org/dc/terms/isPartOf> <https://bioregistry.io/metaregistry/miriam> .
+<https://bioregistry.io/registry/mro> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioportal.bioontology.org/ontologies/MRO> .
+<https://bioregistry.io/registry/pscdb> <https://bioregistry.io/schema/#0000005> "051"^^<http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/metaregistry/prefixcommons> <http://purl.org/dc/terms/hasPart> <https://prefixcommons.org/?q=unipathway> .
+<https://bioregistry.io/registry/panther.pathway> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY> .
+<https://bioregistry.io/registry/otl> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://fairsharing.org/FAIRsharing.61c2x6> .
+<https://bioregistry.io/registry/epso> <http://purl.org/dc/elements/1.1/description> "The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. "^^<http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/registry/cob> <http://www.w3.org/2004/02/skos/core#exactMatch> <https://bioportal.bioontology.org/ontologies/COB> .
+<https://bioregistry.io/registry/glycopost> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://bioregistry.io/schema/#0000001> .
diff --git a/exports/rdf/bioregistry.ttl b/exports/rdf/bioregistry.ttl
index 99403e2e7..b434aad73 100644
--- a/exports/rdf/bioregistry.ttl
+++ b/exports/rdf/bioregistry.ttl
@@ -28,6 +28,7 @@
 @prefix prefixcommons: <https://prefixcommons.org/?q=> .
 @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
 @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix re3data: <https://www.re3data.org/repository/> .
 @prefix uniprot.resource: <https://www.uniprot.org/database/DB-> .
 @prefix wikidata: <https://www.wikidata.org/wiki/Property:> .
 @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@@ -383,7 +384,8 @@ bioregistry:addgene a bioregistry.schema:0000001 ;
     ns2:exactMatch n2t:addgene,
         fairsharing:FAIRsharing.8hcczk,
         prefixcommons:addgene,
-        miriam:addgene ;
+        miriam:addgene,
+        re3data:r3d100010741 ;
     foaf:homepage "http://addgene.org/"^^xsd:string ;
     bioregistry.schema:0000005 "50943"^^xsd:string ;
     bioregistry.schema:0000006 "http://addgene.org/$1"^^xsd:string ;
@@ -512,7 +514,8 @@ bioregistry:amoebadb a bioregistry.schema:0000001 ;
         n2t:amoebadb,
         fairsharing:FAIRsharing.swbypy,
         prefixcommons:amoebadb,
-        miriam:amoebadb ;
+        miriam:amoebadb,
+        re3data:r3d100012457 ;
     foaf:homepage "http://amoebadb.org/amoeba/"^^xsd:string ;
     bioregistry.schema:0000005 "EDI_244000"^^xsd:string ;
     bioregistry.schema:0000006 "https://amoebadb.org/amoeba/app/record/gene/$1"^^xsd:string ;
@@ -683,6 +686,7 @@ bioregistry:arachnoserver a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.c54ywe,
         prefixcommons:arachnoserver,
         miriam:arachnoserver,
+        re3data:r3d100012902,
         uniprot.resource:ArachnoServer ;
     foaf:homepage "http://www.arachnoserver.org/"^^xsd:string ;
     bioregistry.schema:0000005 "AS000060"^^xsd:string ;
@@ -736,7 +740,8 @@ bioregistry:arrayexpress a bioregistry.schema:0000001 ;
         n2t:arrayexpress,
         fairsharing:FAIRsharing.6k0kwd,
         prefixcommons:arrayexpress,
-        miriam:arrayexpress ;
+        miriam:arrayexpress,
+        re3data:r3d100010222 ;
     foaf:homepage "https://www.ebi.ac.uk/arrayexpress/"^^xsd:string ;
     bioregistry.schema:0000005 "E-MEXP-1712"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^xsd:string ;
@@ -763,7 +768,8 @@ bioregistry:arraymap a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:ARRAYMAP,
         n2t:arraymap,
         fairsharing:FAIRsharing.1fbc5y,
-        miriam:arraymap ;
+        miriam:arraymap,
+        re3data:r3d100012630 ;
     foaf:homepage "https://www.arraymap.org"^^xsd:string ;
     bioregistry.schema:0000005 "icdom:8500_3"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.arraymap.org/pgx:$1"^^xsd:string ;
@@ -794,7 +800,8 @@ bioregistry:asap a bioregistry.schema:0000001 ;
         ncbi.resource:ASAP,
         fairsharing:FAIRsharing.anpa6,
         prefixcommons:asap,
-        miriam:asap ;
+        miriam:asap,
+        re3data:r3d100010666 ;
     foaf:homepage "http://asap.ahabs.wisc.edu/asap/home.php"^^xsd:string ;
     bioregistry.schema:0000005 "ABE-0009634"^^xsd:string ;
     bioregistry.schema:0000006 "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1"^^xsd:string ;
@@ -965,7 +972,8 @@ bioregistry:bacdive a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch n2t:bacdive,
         fairsharing:FAIRsharing.aSszvY,
-        miriam:bacdive ;
+        miriam:bacdive,
+        re3data:r3d100013060 ;
     foaf:homepage "https://bacdive.dsmz.de/"^^xsd:string ;
     bioregistry.schema:0000005 "131392"^^xsd:string ;
     bioregistry.schema:0000006 "https://bacdive.dsmz.de/strain/$1"^^xsd:string ;
@@ -1127,7 +1135,8 @@ bioregistry:beetlebase a bioregistry.schema:0000001 ;
         ncbi.resource:BEETLEBASE,
         fairsharing:FAIRsharing.h5f091,
         prefixcommons:beetlebase,
-        miriam:beetlebase ;
+        miriam:beetlebase,
+        re3data:r3d100010921 ;
     foaf:homepage "http://beetlebase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "TC010103"^^xsd:string ;
     bioregistry.schema:0000006 "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1"^^xsd:string ;
@@ -1274,6 +1283,7 @@ bioregistry:bindingdb a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.3b36hk,
         prefixcommons:bindingdb,
         miriam:bindingdb,
+        re3data:r3d100012074,
         uniprot.resource:BindingDB ;
     foaf:homepage "https://www.bindingdb.org"^^xsd:string ;
     bioregistry.schema:0000005 "e999"^^xsd:string ;
@@ -1441,7 +1451,8 @@ bioregistry:bioportal a bioregistry.schema:0000001 ;
         n2t:bioportal,
         fairsharing:FAIRsharing.4m97ah,
         prefixcommons:bioportal,
-        miriam:bioportal ;
+        miriam:bioportal,
+        re3data:r3d100012344 ;
     foaf:homepage "http://bioportal.bioontology.org/"^^xsd:string ;
     bioregistry.schema:0000005 "1046"^^xsd:string ;
     bioregistry.schema:0000006 "http://bioportal.bioontology.org/ontologies/$1"^^xsd:string ;
@@ -1455,7 +1466,8 @@ bioregistry:bioproject a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:BIOPROJECT,
         n2t:bioproject,
         fairsharing:FAIRsharing.aqhv1y,
-        miriam:bioproject ;
+        miriam:bioproject,
+        re3data:r3d100013330 ;
     foaf:homepage "http://trace.ddbj.nig.ac.jp/bioproject/"^^xsd:string ;
     bioregistry.schema:0000005 "PRJDB3"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"^^xsd:string ;
@@ -1481,7 +1493,8 @@ bioregistry:biosample a bioregistry.schema:0000001 ;
         cellosaurus.resource:BioSamples,
         n2t:biosample,
         fairsharing:FAIRsharing.qr6pqk,
-        miriam:biosample ;
+        miriam:biosample,
+        re3data:r3d100012828 ;
     foaf:homepage "https://www.ebi.ac.uk/biosamples/"^^xsd:string ;
     bioregistry.schema:0000005 "SAMEA2397676"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ebi.ac.uk/biosamples/sample/$1"^^xsd:string ;
@@ -1492,7 +1505,8 @@ bioregistry:biosimulations a bioregistry.schema:0000001 ;
     rdfs:label "biosimulations" ;
     dc:description "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch miriam:biosimulations ;
+    ns2:exactMatch miriam:biosimulations,
+        re3data:r3d100013361 ;
     foaf:homepage "https://icahn.mssm.edu/"^^xsd:string ;
     bioregistry.schema:0000005 "Yeast-cell-cycle-Irons-J-Theor-Biol-2009"^^xsd:string ;
     bioregistry.schema:0000006 "https://biosimulations.org/projects/$1"^^xsd:string ;
@@ -1504,7 +1518,8 @@ bioregistry:biosimulators a bioregistry.schema:0000001 ;
     dc:description "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.pwEima,
-        miriam:biosimulators ;
+        miriam:biosimulators,
+        re3data:r3d100013432 ;
     foaf:homepage "https://biosimulators.org/"^^xsd:string ;
     bioregistry.schema:0000005 "vcell"^^xsd:string ;
     bioregistry.schema:0000006 "https://biosimulators.org/simulators/$1"^^xsd:string ;
@@ -1533,7 +1548,8 @@ bioregistry:biotools a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:BIOTOOLS,
         n2t:biotools,
         fairsharing:FAIRsharing.63520c,
-        miriam:biotools ;
+        miriam:biotools,
+        re3data:r3d100013668 ;
     foaf:homepage "https://bio.tools/"^^xsd:string ;
     bioregistry.schema:0000005 "uniprotkb"^^xsd:string ;
     bioregistry.schema:0000006 "https://bio.tools/$1"^^xsd:string ;
@@ -1558,7 +1574,8 @@ bioregistry:bitbucket a bioregistry.schema:0000001 ;
     dc:description "Bitbucket is a Git-based source code repository hosting service owned by Atlassian."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.fc3431,
-        miriam:bitbucket ;
+        miriam:bitbucket,
+        re3data:r3d100013478 ;
     foaf:homepage "https://www.atlassian.com/"^^xsd:string ;
     bioregistry.schema:0000005 "andreadega/systems-biology-compiler"^^xsd:string ;
     bioregistry.schema:0000006 "https://bitbucket.org/$1"^^xsd:string ;
@@ -1625,6 +1642,7 @@ bioregistry:brenda a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.etp533,
         prefixcommons:brenda,
         miriam:brenda,
+        re3data:r3d100010616,
         uniprot.resource:BRENDA ;
     foaf:homepage "https://www.brenda-enzymes.org/"^^xsd:string ;
     bioregistry.schema:0000005 "1.1.1.1"^^xsd:string ;
@@ -2077,6 +2095,7 @@ bioregistry:chemspider a bioregistry.schema:0000001 ;
         prefixcommons:chemspider,
         miriam:chemspider,
         cheminf:000405,
+        re3data:r3d100010205,
         wikidata:P661 ;
     foaf:homepage "http://www.chemspider.com/"^^xsd:string ;
     bioregistry.schema:0000005 "56586"^^xsd:string ;
@@ -2200,6 +2219,7 @@ bioregistry:clinvar a bioregistry.schema:0000001 ;
         n2t:clinvar,
         fairsharing:FAIRsharing.wx5r6f,
         miriam:clinvar,
+        re3data:r3d100013331,
         wikidata:P1929 ;
     foaf:homepage "http://www.ncbi.nlm.nih.gov/clinvar/"^^xsd:string ;
     bioregistry.schema:0000005 "12345"^^xsd:string ;
@@ -2824,7 +2844,8 @@ bioregistry:corrdb a bioregistry.schema:0000001 ;
     dc:description "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.IziuCK,
-        miriam:corrdb ;
+        miriam:corrdb,
+        re3data:r3d100011496 ;
     foaf:homepage "https://www.animalgenome.org"^^xsd:string ;
     bioregistry.schema:0000005 "37232"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^xsd:string ;
@@ -2964,7 +2985,8 @@ bioregistry:cryptodb a bioregistry.schema:0000001 ;
         n2t:cryptodb,
         fairsharing:FAIRsharing.t3nprm,
         prefixcommons:cryptodb,
-        miriam:cryptodb ;
+        miriam:cryptodb,
+        re3data:r3d100012265 ;
     foaf:homepage "https://cryptodb.org/cryptodb/"^^xsd:string ;
     bioregistry.schema:0000005 "cgd7_230"^^xsd:string ;
     bioregistry.schema:0000006 "https://cryptodb.org/cryptodb/app/record/gene/$1"^^xsd:string ;
@@ -3118,7 +3140,8 @@ bioregistry:dandi a bioregistry.schema:0000001 ;
 DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.
 These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."""^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch miriam:dandi ;
+    ns2:exactMatch miriam:dandi,
+        re3data:r3d100013638 ;
     foaf:homepage "https://dandiarchive.org/"^^xsd:string ;
     bioregistry.schema:0000005 "000017"^^xsd:string ;
     bioregistry.schema:0000006 "https://dandiarchive.org/dandiset/$1"^^xsd:string ;
@@ -3342,6 +3365,7 @@ bioregistry:depod a bioregistry.schema:0000001 ;
         n2t:depod,
         fairsharing:FAIRsharing.q9j2e3,
         miriam:depod,
+        re3data:r3d100011936,
         uniprot.resource:DEPOD ;
     foaf:homepage "http://www.depod.bioss.uni-freiburg.de"^^xsd:string ;
     bioregistry.schema:0000005 "PTPN1"^^xsd:string ;
@@ -3570,6 +3594,7 @@ bioregistry:disprot a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.dt9z89,
         prefixcommons:disprot,
         miriam:disprot,
+        re3data:r3d100010561,
         uniprot.resource:DisProt ;
     foaf:homepage "https://disprot.org/"^^xsd:string ;
     bioregistry.schema:0000005 "DP00003"^^xsd:string ;
@@ -3728,6 +3753,7 @@ bioregistry:echobase a bioregistry.schema:0000001 ;
         n2t:echobase,
         prefixcommons:echobase,
         miriam:echobase,
+        re3data:r3d100011646,
         uniprot.resource:EchoBASE ;
     foaf:homepage "http://www.york.ac.uk/"^^xsd:string ;
     bioregistry.schema:0000005 "EB0170"^^xsd:string ;
@@ -3778,7 +3804,8 @@ bioregistry:ecogene a bioregistry.schema:0000001 ;
         ncbi.resource:EcoGene,
         fairsharing:FAIRsharing.3q3kvn,
         prefixcommons:ecogene,
-        miriam:ecogene ;
+        miriam:ecogene,
+        re3data:r3d100010546 ;
     foaf:homepage "http://ecogene.org/"^^xsd:string ;
     bioregistry.schema:0000005 "EG10173"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.ecogene.org/gene/$1"^^xsd:string ;
@@ -3946,7 +3973,8 @@ bioregistry:encode a bioregistry.schema:0000001 ;
         cellosaurus.resource:ENCODE,
         n2t:encode,
         fairsharing:FAIRsharing.v0hbjs,
-        miriam:encode ;
+        miriam:encode,
+        re3data:r3d100013051 ;
     foaf:homepage "https://www.encodeproject.org"^^xsd:string ;
     bioregistry.schema:0000005 "ENCSR163RYW"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.encodeproject.org/$1"^^xsd:string ;
@@ -3978,6 +4006,7 @@ bioregistry:ensembl a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.fx0mw7,
         prefixcommons:ensembl,
         miriam:ensembl,
+        re3data:r3d100010228,
         uniprot.resource:Ensembl,
         wikidata:P594 ;
     foaf:homepage "https://www.ensembl.org/"^^xsd:string ;
@@ -3995,6 +4024,7 @@ bioregistry:ensembl.bacteria a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.zsgmvd,
         prefixcommons:ensembl.bacteria,
         miriam:ensembl.bacteria,
+        re3data:r3d100011195,
         uniprot.resource:EnsemblBacteria ;
     foaf:homepage "https://bacteria.ensembl.org/"^^xsd:string ;
     bioregistry.schema:0000005 "MU9_3181"^^xsd:string ;
@@ -4012,6 +4042,7 @@ bioregistry:ensembl.fungi a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.bg5xqs,
         prefixcommons:ensembl.fungi,
         miriam:ensembl.fungi,
+        re3data:r3d100011196,
         uniprot.resource:EnsemblFungi ;
     foaf:homepage "https://fungi.ensembl.org/"^^xsd:string ;
     bioregistry.schema:0000005 "CADAFLAT00006211"^^xsd:string ;
@@ -4029,6 +4060,7 @@ bioregistry:ensembl.metazoa a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.c23cqq,
         prefixcommons:ensembl.metazoa,
         miriam:ensembl.metazoa,
+        re3data:r3d100011198,
         uniprot.resource:EnsemblMetazoa ;
     foaf:homepage "https://metazoa.ensembl.org/"^^xsd:string ;
     bioregistry.schema:0000005 "FBtr0084214"^^xsd:string ;
@@ -4079,7 +4111,8 @@ bioregistry:envipath a bioregistry.schema:0000001 ;
     dc:description "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.g0c5qn,
-        miriam:envipath ;
+        miriam:envipath,
+        re3data:r3d100012715 ;
     foaf:homepage "https://envipath.org/"^^xsd:string ;
     bioregistry.schema:0000005 "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea"^^xsd:string ;
     bioregistry.schema:0000006 "https://envipath.org/package/$1"^^xsd:string ;
@@ -4286,7 +4319,8 @@ bioregistry:facebase a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:FACEBASE,
         n2t:facebase,
         fairsharing:FAIRsharing.mqvqde,
-        miriam:facebase ;
+        miriam:facebase,
+        re3data:r3d100013263 ;
     foaf:homepage "https://www.facebase.org"^^xsd:string ;
     bioregistry.schema:0000005 "FB00000917"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"^^xsd:string ;
@@ -4300,7 +4334,8 @@ bioregistry:fairsharing a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:FAIRSHARING,
         n2t:fairsharing,
         fairsharing:FAIRsharing.2abjs5,
-        miriam:fairsharing ;
+        miriam:fairsharing,
+        re3data:r3d100010142 ;
     foaf:homepage "https://fairsharing.org/"^^xsd:string ;
     bioregistry.schema:0000005 "bsg-000052"^^xsd:string ;
     bioregistry.schema:0000006 "https://fairsharing.org/$1"^^xsd:string ;
@@ -4411,7 +4446,8 @@ bioregistry:fishbase.species a bioregistry.schema:0000001 ;
     rdfs:label "FishBase" ;
     dc:description "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch wikidata:P938 ;
+    ns2:exactMatch re3data:r3d100010912,
+        wikidata:P938 ;
     foaf:homepage "http://fishbase.org"^^xsd:string ;
     bioregistry.schema:0000005 "6472"^^xsd:string ;
     bioregistry.schema:0000008 "^\\d+$"^^xsd:string ;
@@ -4442,7 +4478,8 @@ bioregistry:flowrepository a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch n2t:flowrepository,
         fairsharing:FAIRsharing.veg2d6,
-        miriam:flowrepository ;
+        miriam:flowrepository,
+        re3data:r3d100011280 ;
     foaf:homepage "https://flowrepository.org/"^^xsd:string ;
     bioregistry.schema:0000005 "FR-FCM-ZYGW"^^xsd:string ;
     bioregistry.schema:0000006 "https://flowrepository.org/id/$1"^^xsd:string ;
@@ -4493,7 +4530,8 @@ bioregistry:foodb.compound a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:FOODB.COMPOUND,
         biolink:foodb.compound,
         n2t:foodb.compound,
-        miriam:foodb.compound ;
+        miriam:foodb.compound,
+        re3data:r3d100012152 ;
     foaf:homepage "https://foodb.ca/"^^xsd:string ;
     bioregistry.schema:0000005 "FDB002100"^^xsd:string ;
     bioregistry.schema:0000006 "http://foodb.ca/compounds/$1"^^xsd:string ;
@@ -4599,7 +4637,8 @@ bioregistry:fungidb a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:FUNGIDB,
         n2t:fungidb,
         fairsharing:FAIRsharing.xf30yc,
-        miriam:fungidb ;
+        miriam:fungidb,
+        re3data:r3d100011906 ;
     foaf:homepage "https://fungidb.org/fungidb"^^xsd:string ;
     bioregistry.schema:0000005 "CNBG_0001"^^xsd:string ;
     bioregistry.schema:0000006 "https://fungidb.org/fungidb/app/record/gene/$1"^^xsd:string ;
@@ -4797,6 +4836,7 @@ bioregistry:genecards a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.g7jbvn,
         prefixcommons:genecards,
         miriam:genecards,
+        re3data:r3d100012015,
         uniprot.resource:GeneCards ;
     foaf:homepage "http://www.genecards.org/"^^xsd:string ;
     bioregistry.schema:0000005 "ABL1"^^xsd:string ;
@@ -4816,6 +4856,7 @@ bioregistry:genedb a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.j7esqq,
         prefixcommons:genedb,
         miriam:genedb,
+        re3data:r3d100010626,
         uniprot.resource:GeneDB,
         wikidata:P3382 ;
     foaf:homepage "https://www.genedb.org/"^^xsd:string ;
@@ -4951,7 +4992,8 @@ bioregistry:giardiadb a bioregistry.schema:0000001 ;
         n2t:giardiadb,
         fairsharing:FAIRsharing.e7skwg,
         prefixcommons:giardiadb,
-        miriam:giardiadb ;
+        miriam:giardiadb,
+        re3data:r3d100012458 ;
     foaf:homepage "https://giardiadb.org/giardiadb/"^^xsd:string ;
     bioregistry.schema:0000005 "GL50803_102438"^^xsd:string ;
     bioregistry.schema:0000006 "https://giardiadb.org/giardiadb/app/record/gene/$1"^^xsd:string ;
@@ -4963,7 +5005,8 @@ bioregistry:github a bioregistry.schema:0000001 ;
     dc:description "GitHub is an online host of Git source code repositories."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.c55d5e,
-        miriam:github ;
+        miriam:github,
+        re3data:r3d100010375 ;
     foaf:homepage "https://github.com/"^^xsd:string ;
     bioregistry.schema:0000005 "biopragmatics/bioregistry"^^xsd:string ;
     bioregistry.schema:0000006 "https://github.com/$1"^^xsd:string ;
@@ -5030,7 +5073,8 @@ bioregistry:glycomedb a bioregistry.schema:0000001 ;
         n2t:glycomedb,
         fairsharing:FAIRsharing.k5k0yh,
         prefixcommons:glycomedb,
-        miriam:glycomedb ;
+        miriam:glycomedb,
+        re3data:r3d100011527 ;
     foaf:homepage "https://glytoucan.org/"^^xsd:string ;
     bioregistry.schema:0000005 "G77500AY"^^xsd:string ;
     bioregistry.schema:0000006 "https://glytoucan.org/Structures/Glycans/$1"^^xsd:string ;
@@ -5173,7 +5217,8 @@ bioregistry:gnpis a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:GNPIS,
         n2t:gnpis,
         fairsharing:FAIRsharing.dw22y3,
-        miriam:gnpis ;
+        miriam:gnpis,
+        re3data:r3d100012647 ;
     foaf:homepage "https://urgi.versailles.inra.fr/gnpis/"^^xsd:string ;
     bioregistry.schema:0000005 "AY109603"^^xsd:string ;
     bioregistry.schema:0000006 "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"^^xsd:string ;
@@ -5393,7 +5438,8 @@ bioregistry:greengenes a bioregistry.schema:0000001 ;
         ncbi.resource:Greengenes,
         fairsharing:FAIRsharing.bpxgb6,
         prefixcommons:greengenes,
-        miriam:greengenes ;
+        miriam:greengenes,
+        re3data:r3d100010549 ;
     foaf:homepage "http://greengenes.lbl.gov/"^^xsd:string ;
     bioregistry.schema:0000005 "100000"^^xsd:string ;
     bioregistry.schema:0000006 "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"^^xsd:string ;
@@ -5471,7 +5517,8 @@ bioregistry:gudmap a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:GUDMAP,
         n2t:gudmap,
         fairsharing:FAIRsharing.910c39,
-        miriam:gudmap ;
+        miriam:gudmap,
+        re3data:r3d100012193 ;
     foaf:homepage "http://www.gudmap.org/"^^xsd:string ;
     bioregistry.schema:0000005 "Q-2958"^^xsd:string ;
     bioregistry.schema:0000006 "https://gudmap.org/id/$1"^^xsd:string ;
@@ -5942,7 +5989,8 @@ bioregistry:hpscreg a bioregistry.schema:0000001 ;
     ns2:exactMatch cellosaurus.resource:hPSCreg,
         n2t:hpscreg,
         fairsharing:FAIRsharing.7C0aVE,
-        miriam:hpscreg ;
+        miriam:hpscreg,
+        re3data:r3d100012863 ;
     foaf:homepage "https://hpscreg.eu/"^^xsd:string ;
     bioregistry.schema:0000005 "BCRTi001-A"^^xsd:string ;
     bioregistry.schema:0000006 "https://hpscreg.eu/cell-line/$1"^^xsd:string ;
@@ -6227,7 +6275,8 @@ bioregistry:imex a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:IMEX,
         n2t:imex,
         prefixcommons:imex,
-        miriam:imex ;
+        miriam:imex,
+        re3data:r3d100010669 ;
     foaf:homepage "https://www.imexconsortium.org/"^^xsd:string ;
     bioregistry.schema:0000005 "IM-19210-3"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1"^^xsd:string ;
@@ -6404,6 +6453,7 @@ bioregistry:intact a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.d05nwx,
         prefixcommons:intact,
         miriam:intact,
+        re3data:r3d100010671,
         uniprot.resource:IntAct ;
     foaf:homepage "https://www.ebi.ac.uk/intact/"^^xsd:string ;
     bioregistry.schema:0000005 "EBI-2307691"^^xsd:string ;
@@ -6450,6 +6500,7 @@ bioregistry:interpro a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.pda11d,
         prefixcommons:interpro,
         miriam:interpro,
+        re3data:r3d100010798,
         uniprot.resource:InterPro,
         wikidata:P2926 ;
     foaf:homepage "http://www.ebi.ac.uk/interpro/index.html"^^xsd:string ;
@@ -6481,7 +6532,8 @@ bioregistry:irefweb a bioregistry.schema:0000001 ;
         n2t:irefweb,
         fairsharing:FAIRsharing.t31wcb,
         prefixcommons:irefweb,
-        miriam:irefweb ;
+        miriam:irefweb,
+        re3data:r3d100012725 ;
     foaf:homepage "http://wodaklab.org/iRefWeb/"^^xsd:string ;
     bioregistry.schema:0000005 "617102"^^xsd:string ;
     bioregistry.schema:0000006 "http://wodaklab.org/iRefWeb/interaction/show/$1"^^xsd:string ;
@@ -6556,6 +6608,7 @@ bioregistry:itis a bioregistry.schema:0000001 ;
     dc:description "Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.t19hpa,
+        re3data:r3d100011213,
         wikidata:P815 ;
     foaf:homepage "https://www.itis.gov/"^^xsd:string ;
     bioregistry.schema:0000005 "589462"^^xsd:string ;
@@ -6721,7 +6774,8 @@ bioregistry:kaggle a bioregistry.schema:0000001 ;
     dc:description "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch n2t:kaggle,
-        miriam:kaggle ;
+        miriam:kaggle,
+        re3data:r3d100012705 ;
     foaf:homepage "https://kaggle.com"^^xsd:string ;
     bioregistry.schema:0000005 "nasa/kepler-exoplanet-search-results"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.kaggle.com/$1"^^xsd:string ;
@@ -6806,7 +6860,8 @@ bioregistry:licebase a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:LICEBASE,
         n2t:licebase,
         fairsharing:FAIRsharing.c7w81a,
-        miriam:licebase ;
+        miriam:licebase,
+        re3data:r3d100013547 ;
     foaf:homepage "https://licebase.org"^^xsd:string ;
     bioregistry.schema:0000005 "EMLSAT00000003403"^^xsd:string ;
     bioregistry.schema:0000006 "https://licebase.org/?q=$1"^^xsd:string ;
@@ -7037,6 +7092,7 @@ bioregistry:maizegdb.locus a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.aq280w,
         prefixcommons:maizegdb,
         miriam:maizegdb.locus,
+        re3data:r3d100010795,
         uniprot.resource:MaizeGDB ;
     foaf:homepage "http://www.maizegdb.org/"^^xsd:string ;
     bioregistry.schema:0000005 "25011"^^xsd:string ;
@@ -7237,6 +7293,7 @@ bioregistry:metabolights a bioregistry.schema:0000001 ;
         cellosaurus.resource:MetaboLights,
         n2t:metabolights,
         miriam:metabolights,
+        re3data:r3d100011556,
         wikidata:P3890 ;
     foaf:homepage "https://www.ebi.ac.uk/metabolights/"^^xsd:string ;
     bioregistry.schema:0000005 "MTBLS1"^^xsd:string ;
@@ -7304,7 +7361,8 @@ bioregistry:metlin a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch biocontext:METLIN,
         n2t:metlin,
-        miriam:metlin ;
+        miriam:metlin,
+        re3data:r3d100012311 ;
     foaf:homepage "http://masspec.scripps.edu/"^^xsd:string ;
     bioregistry.schema:0000005 "1455"^^xsd:string ;
     bioregistry.schema:0000006 "http://metlin.scripps.edu/metabo_info.php?molid=$1"^^xsd:string ;
@@ -7497,7 +7555,8 @@ bioregistry:microscope a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:MICROSCOPE,
         n2t:microscope,
         fairsharing:FAIRsharing.3t5qc3,
-        miriam:microscope ;
+        miriam:microscope,
+        re3data:r3d100012928 ;
     foaf:homepage "http://www.genoscope.cns.fr/agc/microscope"^^xsd:string ;
     bioregistry.schema:0000005 "5601141"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"^^xsd:string ;
@@ -7623,6 +7682,7 @@ bioregistry:mirbase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.hmgte8,
         prefixcommons:mirbase,
         miriam:mirbase,
+        re3data:r3d100010566,
         wikidata:P2870 ;
     foaf:homepage "http://www.mirbase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "MI0026471"^^xsd:string ;
@@ -7966,7 +8026,8 @@ bioregistry:modeldb a bioregistry.schema:0000001 ;
         n2t:modeldb,
         fairsharing:FAIRsharing.5rb3fk,
         prefixcommons:modeldb,
-        miriam:modeldb ;
+        miriam:modeldb,
+        re3data:r3d100011330 ;
     foaf:homepage "http://senselab.med.yale.edu/ModelDB/"^^xsd:string ;
     bioregistry.schema:0000005 "45539"^^xsd:string ;
     bioregistry.schema:0000006 "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1"^^xsd:string ;
@@ -8210,7 +8271,8 @@ bioregistry:mycobank a bioregistry.schema:0000001 ;
         ncbi.resource:MycoBank,
         fairsharing:FAIRsharing.v8se8r,
         prefixcommons:mycobank,
-        miriam:mycobank ;
+        miriam:mycobank,
+        re3data:r3d100011222 ;
     foaf:homepage "http://www.mycobank.org/"^^xsd:string ;
     bioregistry.schema:0000005 "349124"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1"^^xsd:string ;
@@ -8281,7 +8343,8 @@ bioregistry:nasc a bioregistry.schema:0000001 ;
         n2t:nasc,
         fairsharing:FAIRsharing.2sqcxs,
         prefixcommons:nasc,
-        miriam:nasc ;
+        miriam:nasc,
+        re3data:r3d100010906 ;
     foaf:homepage "http://arabidopsis.info/"^^xsd:string ;
     bioregistry.schema:0000005 "N1899"^^xsd:string ;
     bioregistry.schema:0000006 "http://arabidopsis.info/StockInfo?NASC_id=$1"^^xsd:string ;
@@ -8322,7 +8385,8 @@ bioregistry:ncbi.assembly a bioregistry.schema:0000001 ;
     dc:description "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch biocontext:NCBIAssembly,
-        miriam:assembly ;
+        miriam:assembly,
+        re3data:r3d100012688 ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/"^^xsd:string ;
     bioregistry.schema:0000005 "GCF_000005845.2"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ncbi.nlm.nih.gov/assembly/$1"^^xsd:string ;
@@ -9490,6 +9554,7 @@ bioregistry:pathwaycommons a bioregistry.schema:0000001 ;
         n2t:pathwaycommons,
         prefixcommons:pathwaycommons,
         miriam:pathwaycommons,
+        re3data:r3d100012731,
         uniprot.resource:PathwayCommons ;
     foaf:homepage "http://www.pathwaycommons.org/pc/"^^xsd:string ;
     bioregistry.schema:0000005 "485991"^^xsd:string ;
@@ -9594,6 +9659,7 @@ bioregistry:peptideatlas a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.dvyrsz,
         prefixcommons:peptideatlas,
         miriam:peptideatlas,
+        re3data:r3d100010889,
         uniprot.resource:PeptideAtlas ;
     foaf:homepage "http://www.peptideatlas.org/"^^xsd:string ;
     bioregistry.schema:0000005 "PAp00000009"^^xsd:string ;
@@ -9676,7 +9742,8 @@ bioregistry:pgx a bioregistry.schema:0000001 ;
         cellosaurus.resource:Progenetix,
         n2t:pgx,
         fairsharing:FAIRsharing.65tdnz,
-        miriam:pgx ;
+        miriam:pgx,
+        re3data:r3d100012820 ;
     foaf:homepage "https://progenetix.org/"^^xsd:string ;
     bioregistry.schema:0000005 "pgxbs-kftva5zv"^^xsd:string ;
     bioregistry.schema:0000006 "https://progenetix.org/services/ids/$1"^^xsd:string ;
@@ -9765,7 +9832,8 @@ bioregistry:phenolexplorer a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch biocontext:PHENOLEXPLORER,
         n2t:phenolexplorer,
-        miriam:phenolexplorer ;
+        miriam:phenolexplorer,
+        re3data:r3d100012197 ;
     foaf:homepage "http://www.phenol-explorer.eu/foods/"^^xsd:string ;
     bioregistry.schema:0000005 "75"^^xsd:string ;
     bioregistry.schema:0000006 "http://phenol-explorer.eu/foods/$1"^^xsd:string ;
@@ -9966,7 +10034,8 @@ bioregistry:plasmodb a bioregistry.schema:0000001 ;
         ncbi.resource:ApiDB_PlasmoDB,
         fairsharing:FAIRsharing.g4n8sw,
         prefixcommons:plasmodb,
-        miriam:plasmodb ;
+        miriam:plasmodb,
+        re3data:r3d100011569 ;
     foaf:homepage "http://plasmodb.org/plasmo/"^^xsd:string ;
     bioregistry.schema:0000005 "PF11_0344"^^xsd:string ;
     bioregistry.schema:0000006 "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^xsd:string ;
@@ -10112,6 +10181,7 @@ bioregistry:pombase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.8jsya3,
         prefixcommons:pombase,
         miriam:pombase,
+        re3data:r3d100011478,
         uniprot.resource:PomBase,
         wikidata:P6245 ;
     foaf:homepage "http://www.pombase.org/"^^xsd:string ;
@@ -10530,6 +10600,7 @@ bioregistry:reactome a bioregistry.schema:0000001 ;
         prefixcommons:reactome,
         miriam:reactome,
         cheminf:000411,
+        re3data:r3d100010861,
         uniprot.resource:Reactome,
         wikidata:P3937 ;
     foaf:homepage "https://www.reactome.org/"^^xsd:string ;
@@ -10560,6 +10631,7 @@ bioregistry:rebase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.9sb9qh,
         prefixcommons:rebase,
         miriam:rebase,
+        re3data:r3d100012171,
         uniprot.resource:REBASE ;
     foaf:homepage "http://rebase.neb.com/rebase/"^^xsd:string ;
     bioregistry.schema:0000005 "101"^^xsd:string ;
@@ -10720,7 +10792,8 @@ Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as
         n2t:rhea,
         fairsharing:FAIRsharing.pn1sr5,
         prefixcommons:rhea,
-        miriam:rhea ;
+        miriam:rhea,
+        re3data:r3d100010891 ;
     foaf:homepage "https://www.rhea-db.org/"^^xsd:string ;
     bioregistry.schema:0000005 "12345"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.rhea-db.org/rhea/$1"^^xsd:string ;
@@ -11003,6 +11076,7 @@ bioregistry:sabiork.reaction a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.cwx04e,
         prefixcommons:sabiork.reaction,
         miriam:sabiork.reaction,
+        re3data:r3d100011052,
         uniprot.resource:SABIO-RK ;
     foaf:homepage "http://sabiork.h-its.org/"^^xsd:string ;
     bioregistry.schema:0000005 "75"^^xsd:string ;
@@ -11033,6 +11107,7 @@ bioregistry:sasbdb a bioregistry.schema:0000001 ;
         n2t:sasbdb,
         fairsharing:FAIRsharing.i1F3Hb,
         miriam:sasbdb,
+        re3data:r3d100012273,
         uniprot.resource:SASBDB ;
     foaf:homepage "http://www.sasbdb.org/"^^xsd:string ;
     bioregistry.schema:0000005 "SASDAX8"^^xsd:string ;
@@ -11479,7 +11554,8 @@ bioregistry:soybase a bioregistry.schema:0000001 ;
         n2t:soybase,
         ncbi.resource:SoyBase,
         fairsharing:FAIRsharing.z4agsr,
-        miriam:soybase ;
+        miriam:soybase,
+        re3data:r3d100010846 ;
     foaf:homepage "http://soybase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "BARC-013845-01256"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"^^xsd:string ;
@@ -11607,6 +11683,7 @@ The interactions include direct (physical) and indirect (functional) association
         fairsharing:FAIRsharing.9b7wvk,
         prefixcommons:string,
         miriam:string,
+        re3data:r3d100010604,
         uniprot.resource:STRING ;
     foaf:homepage "http://string.embl.de/"^^xsd:string ;
     bioregistry.schema:0000005 "P53350"^^xsd:string ;
@@ -11737,6 +11814,7 @@ bioregistry:swisslipid a bioregistry.schema:0000001 ;
         n2t:swisslipid,
         fairsharing:FAIRsharing.pxr7x2,
         miriam:slm,
+        re3data:r3d100012603,
         uniprot.resource:SwissLipids,
         wikidata:P8691 ;
     foaf:homepage "http://www.swisslipids.org/#/"^^xsd:string ;
@@ -11787,7 +11865,8 @@ bioregistry:t3db a bioregistry.schema:0000001 ;
         n2t:t3db,
         fairsharing:FAIRsharing.psn0h2,
         prefixcommons:t3db,
-        miriam:t3db ;
+        miriam:t3db,
+        re3data:r3d100012189 ;
     foaf:homepage "http://www.t3db.org/"^^xsd:string ;
     bioregistry.schema:0000005 "T3D0001"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.t3db.org/toxins/$1"^^xsd:string ;
@@ -12080,7 +12159,8 @@ bioregistry:topfind a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:TOPFIND,
         n2t:topfind,
         fairsharing:FAIRsharing.rkpmhn,
-        miriam:topfind ;
+        miriam:topfind,
+        re3data:r3d100012721 ;
     foaf:homepage "https://topfind.clip.msl.ubc.ca"^^xsd:string ;
     bioregistry.schema:0000005 "Q9UKQ2"^^xsd:string ;
     bioregistry.schema:0000006 "http://clipserve.clip.ubc.ca/topfind/proteins/$1"^^xsd:string ;
@@ -12138,7 +12218,8 @@ bioregistry:treebase a bioregistry.schema:0000001 ;
         n2t:treebase,
         fairsharing:FAIRsharing.zcn4w4,
         prefixcommons:treebase,
-        miriam:treebase ;
+        miriam:treebase,
+        re3data:r3d100010170 ;
     foaf:homepage "http://treebase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "TB2:S1000"^^xsd:string ;
     bioregistry.schema:0000006 "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^xsd:string ;
@@ -12167,7 +12248,8 @@ bioregistry:trichdb a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:TRICHDB,
         n2t:trichdb,
         fairsharing:FAIRsharing.pv0ezt,
-        miriam:trichdb ;
+        miriam:trichdb,
+        re3data:r3d100012461 ;
     foaf:homepage "http://trichdb.org/trichdb/"^^xsd:string ;
     bioregistry.schema:0000005 "TVAG_386080"^^xsd:string ;
     bioregistry.schema:0000006 "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^xsd:string ;
@@ -12182,7 +12264,8 @@ bioregistry:tritrypdb a bioregistry.schema:0000001 ;
         go.resource:TriTrypDB,
         n2t:tritrypdb,
         fairsharing:FAIRsharing.fs1z27,
-        miriam:tritrypdb ;
+        miriam:tritrypdb,
+        re3data:r3d100011479 ;
     foaf:homepage "http://tritrypdb.org/tritrypdb/"^^xsd:string ;
     bioregistry.schema:0000005 "Tb927.8.620"^^xsd:string ;
     bioregistry.schema:0000006 "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^xsd:string ;
@@ -12289,7 +12372,8 @@ bioregistry:unigene a bioregistry.schema:0000001 ;
         n2t:unigene,
         fairsharing:FAIRsharing.ge1c3p,
         prefixcommons:unigene,
-        miriam:unigene ;
+        miriam:unigene,
+        re3data:r3d100010774 ;
     foaf:homepage "http://www.ncbi.nlm.nih.gov/unigene"^^xsd:string ;
     bioregistry.schema:0000005 "4900"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"^^xsd:string ;
@@ -12336,7 +12420,8 @@ bioregistry:uniparc a bioregistry.schema:0000001 ;
         go.resource:UniParc,
         n2t:uniparc,
         prefixcommons:uniparc,
-        miriam:uniparc ;
+        miriam:uniparc,
+        re3data:r3d100011519 ;
     foaf:homepage "https://www.ebi.ac.uk/uniparc/"^^xsd:string ;
     bioregistry.schema:0000005 "UPI000000000A"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1"^^xsd:string ;
@@ -12374,7 +12459,8 @@ bioregistry:uniref a bioregistry.schema:0000001 ;
     dc:description "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch edam.data:2346,
-        miriam:uniref ;
+        miriam:uniref,
+        re3data:r3d100011518 ;
     foaf:homepage "https://www.uniprot.org/"^^xsd:string ;
     bioregistry.schema:0000005 "UniRef90_P00750"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.uniprot.org/uniref/$1"^^xsd:string ;
@@ -12417,7 +12503,8 @@ bioregistry:unite a bioregistry.schema:0000001 ;
         ncbi.resource:UNITE,
         fairsharing:FAIRsharing.cnwx8c,
         prefixcommons:unite,
-        miriam:unite ;
+        miriam:unite,
+        re3data:r3d100011316 ;
     foaf:homepage "http://unite.ut.ee/"^^xsd:string ;
     bioregistry.schema:0000005 "UDB000691"^^xsd:string ;
     bioregistry.schema:0000006 "http://unite.ut.ee/bl_forw.php?nimi=$1"^^xsd:string ;
@@ -12574,7 +12661,8 @@ bioregistry:vectorbase a bioregistry.schema:0000001 ;
         ncbi.resource:VectorBase,
         fairsharing:FAIRsharing.3etvdn,
         prefixcommons:vectorbase,
-        miriam:vectorbase ;
+        miriam:vectorbase,
+        re3data:r3d100010880 ;
     foaf:homepage "https://www.vectorbase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "ISCW007415"^^xsd:string ;
     bioregistry.schema:0000006 "https://vectorbase.org/vectorbase/app/record/gene/$1"^^xsd:string ;
@@ -12585,7 +12673,8 @@ bioregistry:vegbank a bioregistry.schema:0000001 ;
     rdfs:label "VegBank" ;
     dc:description "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. "^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch miriam:vegbank ;
+    ns2:exactMatch miriam:vegbank,
+        re3data:r3d100010153 ;
     foaf:homepage "http://vegbank.org/"^^xsd:string ;
     bioregistry.schema:0000005 "VB.Ob.3736.GRSM125"^^xsd:string ;
     bioregistry.schema:0000006 "http://vegbank.org/cite/$1"^^xsd:string ;
@@ -12707,7 +12796,8 @@ bioregistry:viralzone a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:VIRALZONE,
         n2t:viralzone,
         fairsharing:FAIRsharing.tppk10,
-        miriam:viralzone ;
+        miriam:viralzone,
+        re3data:r3d100013314 ;
     foaf:homepage "http://www.expasy.org/viralzone/"^^xsd:string ;
     bioregistry.schema:0000005 "992"^^xsd:string ;
     bioregistry.schema:0000006 "http://viralzone.expasy.org/all_by_protein/$1.html"^^xsd:string ;
@@ -12938,6 +13028,7 @@ All content is under the Creative Commons Attribution 3.0 Unported license."""^^
         fairsharing:FAIRsharing.g7b4rj,
         prefixcommons:wikipathways,
         miriam:wikipathways,
+        re3data:r3d100013316,
         wikidata:P2410 ;
     foaf:homepage "http://www.wikipathways.org/"^^xsd:string ;
     bioregistry.schema:0000005 "WP732"^^xsd:string ;
@@ -13017,6 +13108,7 @@ bioregistry:xenbase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.jrv6wj,
         prefixcommons:xenbase,
         miriam:xenbase,
+        re3data:r3d100011331,
         uniprot.resource:Xenbase ;
     foaf:homepage "https://www.xenbase.org/"^^xsd:string ;
     bioregistry.schema:0000005 "XB-GENE-922462"^^xsd:string ;
@@ -13186,6 +13278,7 @@ bioregistry:zinc a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:ZINC,
         n2t:zinc,
         miriam:zinc,
+        re3data:r3d100010372,
         wikidata:P2084 ;
     foaf:homepage "http://zinc15.docking.org/"^^xsd:string ;
     bioregistry.schema:0000005 "ZINC1084"^^xsd:string ;
@@ -13411,6 +13504,8 @@ orcid:0000-0003-3499-8262 rdfs:label "Alejandra Gonzalez-Beltran" .
 
 orcid:0000-0003-3781-6962 rdfs:label "Meng LIU" .
 
+orcid:0000-0003-4221-7956 rdfs:label "Michael Witt" .
+
 orcid:0000-0003-4312-9552 rdfs:label "Daniel C. Berrios" .
 
 orcid:0000-0003-4494-839X rdfs:label "Xeni Kechagioglou" .
@@ -19967,7 +20062,8 @@ bioregistry:bactibase a bioregistry.schema:0000001 ;
     dc:description "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.5f5mfm,
-        prefixcommons:bactibase ;
+        prefixcommons:bactibase,
+        re3data:r3d100012755 ;
     foaf:homepage "http://bactibase.hammamilab.org"^^xsd:string ;
     bioregistry.schema:0000005 "BAC045"^^xsd:string ;
     bioregistry.schema:0000006 "http://bactibase.hammamilab.org/$1"^^xsd:string ;
@@ -20041,6 +20137,7 @@ bioregistry:biogrid a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.9d5f5r,
         prefixcommons:biogrid,
         miriam:biogrid,
+        re3data:r3d100010350,
         uniprot.resource:BioGRID ;
     foaf:homepage "http://thebiogrid.org/"^^xsd:string ;
     bioregistry.schema:0000005 "31623"^^xsd:string ;
@@ -20106,7 +20203,8 @@ bioregistry:biostudies a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch n2t:biostudies,
         fairsharing:FAIRsharing.mtjvme,
-        miriam:biostudies ;
+        miriam:biostudies,
+        re3data:r3d100012627 ;
     foaf:homepage "https://www.ebi.ac.uk/biostudies/"^^xsd:string ;
     bioregistry.schema:0000005 "S-EPMC6266652"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ebi.ac.uk/biostudies/studies/$1"^^xsd:string ;
@@ -20227,7 +20325,8 @@ bioregistry:cath a bioregistry.schema:0000001 ;
         n2t:cath,
         fairsharing:FAIRsharing.xgcyyn,
         prefixcommons:cath,
-        miriam:cath ;
+        miriam:cath,
+        re3data:r3d100012629 ;
     foaf:homepage "http://www.cathdb.info"^^xsd:string ;
     bioregistry.schema:0000005 "1.10.8.10"^^xsd:string ;
     bioregistry.schema:0000006 "http://www.cathdb.info/cathnode/$1"^^xsd:string ;
@@ -20327,6 +20426,7 @@ bioregistry:cellosaurus a bioregistry.schema:0000001 ;
         n2t:cellosaurus,
         fairsharing:FAIRsharing.hkk309,
         miriam:cellosaurus,
+        re3data:r3d100013293,
         wikidata:P3289 ;
     foaf:homepage "https://web.expasy.org/cellosaurus/"^^xsd:string ;
     bioregistry.schema:0000005 "0440"^^xsd:string ;
@@ -20347,7 +20447,8 @@ bioregistry:cgnc a bioregistry.schema:0000001 ;
     rdfs:label "Chicken Gene Nomenclature Consortium" ;
     dc:description "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)"^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch prefixcommons:cgnc ;
+    ns2:exactMatch prefixcommons:cgnc,
+        re3data:r3d100012429 ;
     foaf:homepage "http://birdgenenames.org/cgnc/"^^xsd:string ;
     bioregistry.schema:0000005 "10087"^^xsd:string ;
     bioregistry.schema:0000006 "http://birdgenenames.org/cgnc/GeneReport?id=$1"^^xsd:string ;
@@ -20551,6 +20652,7 @@ bioregistry:complexportal a bioregistry.schema:0000001 ;
         go.resource:ComplexPortal,
         n2t:complexportal,
         miriam:complexportal,
+        re3data:r3d100013295,
         uniprot.resource:ComplexPortal,
         wikidata:P7718 ;
     foaf:homepage "https://www.ebi.ac.uk/complexportal"^^xsd:string ;
@@ -20735,6 +20837,7 @@ bioregistry:dbsnp a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.edxb58,
         prefixcommons:dbsnp,
         miriam:dbsnp,
+        re3data:r3d100010652,
         uniprot.resource:dbSNP ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/snp/"^^xsd:string ;
     bioregistry.schema:0000005 "rs121909098"^^xsd:string ;
@@ -21038,7 +21141,8 @@ bioregistry:dsmz a bioregistry.schema:0000001 ;
     rdfs:label "Deutsche Sammlung von Mikroorganismen und Zellkulturen" ;
     dc:description "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines)."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch cellosaurus.resource:DSMZ ;
+    ns2:exactMatch cellosaurus.resource:DSMZ,
+        re3data:r3d100010219 ;
     foaf:homepage "https://www.dsmz.de"^^xsd:string ;
     bioregistry.schema:0000005 "ACC-1"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.dsmz.de/collection/catalogue/details/culture/$1"^^xsd:string ;
@@ -21048,7 +21152,8 @@ bioregistry:eaglei a bioregistry.schema:0000001 ;
     rdfs:label "eagle-i" ;
     dc:description "Discovery tool for biomedical research resources available at institutions throughout the U.S."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch cellosaurus.resource:eagle-i ;
+    ns2:exactMatch cellosaurus.resource:eagle-i,
+        re3data:r3d100011564 ;
     foaf:homepage "https://hawaii.eagle-i.net"^^xsd:string ;
     bioregistry.schema:0000005 "0000012b-5661-2f63-2f73-b43980000000"^^xsd:string ;
     bioregistry.schema:0000006 "http://hawaii.eagle-i.net/i/$1"^^xsd:string ;
@@ -21217,7 +21322,8 @@ bioregistry:eol a bioregistry.schema:0000001 ;
         agroportal:EOL,
         bioportal:EOL,
         fairsharing:FAIRsharing.w7bw2y,
-        ols:eol ;
+        ols:eol,
+        re3data:r3d100011663 ;
     foaf:homepage "http://www.atol-ontology.com"^^xsd:string ;
     bioregistry.schema:0000005 "0001927"^^xsd:string ;
     bioregistry.schema:0000008 "^\\d{7}$"^^xsd:string ;
@@ -21509,6 +21615,7 @@ bioregistry:genbank a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.9kahy4,
         prefixcommons:genbank,
         cheminf:000304,
+        re3data:r3d100010528,
         uniprot.resource:GenBank ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/genbank/"^^xsd:string ;
     bioregistry.schema:0000005 "U49845"^^xsd:string ;
@@ -21538,7 +21645,8 @@ bioregistry:geonames a bioregistry.schema:0000001 ;
     rdfs:label "GeoNames" ;
     dc:description "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch fairsharing:FAIRsharing.56a0Uj ;
+    ns2:exactMatch fairsharing:FAIRsharing.56a0Uj,
+        re3data:r3d100010245 ;
     foaf:homepage "https://www.geonames.org"^^xsd:string ;
     bioregistry.schema:0000005 "3532759"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.geonames.org/$1"^^xsd:string ;
@@ -21587,7 +21695,8 @@ bioregistry:glytoucan a bioregistry.schema:0000001 ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch biocontext:GLYTOUCAN,
         n2t:glytoucan,
-        miriam:glytoucan ;
+        miriam:glytoucan,
+        re3data:r3d100012388 ;
     foaf:homepage "https://glytoucan.org"^^xsd:string ;
     bioregistry.schema:0000005 "G00054MO"^^xsd:string ;
     bioregistry.schema:0000006 "https://glytoucan.org/Structures/Glycans/$1"^^xsd:string ;
@@ -22344,7 +22453,8 @@ bioregistry:matrixdb a bioregistry.schema:0000001 ;
     dc:description "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides"^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.91yrz6,
-        prefixcommons:matrixdb ;
+        prefixcommons:matrixdb,
+        re3data:r3d100010672 ;
     foaf:homepage "http://matrixdb.univ-lyon1.fr/"^^xsd:string ;
     bioregistry.schema:0000005 "MULT_4_VAR1_bovine"^^xsd:string ;
     bioregistry.schema:0000006 "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"^^xsd:string ;
@@ -22377,7 +22487,8 @@ bioregistry:metacyc.compound a bioregistry.schema:0000001 ;
         go.resource:MetaCyc,
         n2t:metacyc.compound,
         fairsharing:FAIRsharing.yytevr,
-        miriam:metacyc.compound ;
+        miriam:metacyc.compound,
+        re3data:r3d100011294 ;
     foaf:homepage "https://metacyc.org"^^xsd:string ;
     bioregistry.schema:0000005 "CPD-10330"^^xsd:string ;
     bioregistry.schema:0000006 "https://metacyc.org/compound?orgid=META&id=$1"^^xsd:string ;
@@ -22554,7 +22665,8 @@ bioregistry:ncbi.genome a bioregistry.schema:0000001 ;
     dc:description "This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch edam.data:2787,
-        biocontext:NCBIGenome ;
+        biocontext:NCBIGenome,
+        re3data:r3d100010785 ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/genome"^^xsd:string ;
     bioregistry.schema:0000005 "51"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ncbi.nlm.nih.gov/genome/$1"^^xsd:string ;
@@ -23298,6 +23410,7 @@ bioregistry:pubchem.compound a bioregistry.schema:0000001 ;
         prefixcommons:pubchem.compound,
         miriam:pubchem.compound,
         cheminf:000140,
+        re3data:r3d100010129,
         wikidata:P662 ;
     foaf:homepage "https://pubchem.ncbi.nlm.nih.gov/"^^xsd:string ;
     bioregistry.schema:0000005 "100101"^^xsd:string ;
@@ -23892,7 +24005,8 @@ bioregistry:vega a bioregistry.schema:0000001 ;
     dc:description "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
     ns2:exactMatch fairsharing:FAIRsharing.mr293q,
-        prefixcommons:vega ;
+        prefixcommons:vega,
+        re3data:r3d100012575 ;
     foaf:homepage "https://vega.archive.ensembl.org/index.html"^^xsd:string ;
     bioregistry.schema:0000005 "OTTHUMG00000169812"^^xsd:string ;
     bioregistry.schema:0000006 "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1"^^xsd:string ;
@@ -24113,7 +24227,8 @@ bioregistry:zenodo.record a bioregistry.schema:0000001 ;
     rdfs:label "Zenodo" ;
     dc:description "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts."^^xsd:string ;
     ns1:isPartOf bioregistry.metaresource:bioregistry ;
-    ns2:exactMatch wikidata:P4901 ;
+    ns2:exactMatch re3data:r3d100010468,
+        wikidata:P4901 ;
     foaf:homepage "https://zenodo.org"^^xsd:string ;
     bioregistry.schema:0000005 "4390079"^^xsd:string ;
     bioregistry.schema:0000006 "https://zenodo.org/record/$1"^^xsd:string ;
@@ -28145,6 +28260,254 @@ ols:zfs ns1:isPartOf bioregistry.metaresource:ols .
 
 ols:zp ns1:isPartOf bioregistry.metaresource:ols .
 
+re3data:r3d100010129 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010142 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010153 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010170 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010205 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010219 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010222 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010228 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010245 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010350 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010372 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010375 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010415 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010424 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010468 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010528 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010539 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010544 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010546 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010549 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010561 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010566 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010586 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010591 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010604 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010616 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010626 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010650 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010652 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010666 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010669 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010671 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010672 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010741 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010774 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010776 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010785 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010795 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010798 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010846 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010861 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010880 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010889 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010891 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010906 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010910 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010912 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100010921 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011049 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011052 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011195 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011196 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011198 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011213 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011222 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011280 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011294 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011316 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011330 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011331 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011478 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011479 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011496 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011518 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011519 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011521 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011527 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011556 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011564 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011569 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011646 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011663 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011906 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100011936 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012015 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012074 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012152 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012171 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012189 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012193 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012197 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012265 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012273 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012311 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012344 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012388 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012429 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012457 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012458 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012461 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012575 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012603 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012626 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012627 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012629 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012630 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012647 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012688 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012705 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012715 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012721 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012725 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012731 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012755 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012820 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012828 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012863 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012902 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100012928 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013051 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013060 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013263 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013293 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013295 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013314 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013316 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013330 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013331 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013361 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013432 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013478 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013547 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013638 ns1:isPartOf bioregistry.metaresource:re3data .
+
+re3data:r3d100013668 ns1:isPartOf bioregistry.metaresource:re3data .
+
 uniprot.resource:ABCD ns1:isPartOf bioregistry.metaresource:uniprot .
 
 uniprot.resource:Allergome ns1:isPartOf bioregistry.metaresource:uniprot .
@@ -28776,6 +29139,7 @@ bioregistry:dictybase a bioregistry.schema:0000001 ;
         ncbi.resource:dictyBase,
         fairsharing:FAIRsharing.4shj9c,
         prefixcommons:dictybase,
+        re3data:r3d100010586,
         uniprot.resource:dictyBase ;
     foaf:homepage "http://dictybase.org"^^xsd:string ;
     bioregistry.schema:0000005 "DDB0191090"^^xsd:string ;
@@ -29315,6 +29679,7 @@ bioregistry:ncbigene a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.5h3maw,
         prefixcommons:ncbigene,
         miriam:ncbigene,
+        re3data:r3d100010650,
         wikidata:P351 ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/gene"^^xsd:string ;
     bioregistry.schema:0000005 "100010"^^xsd:string ;
@@ -29330,7 +29695,8 @@ bioregistry:ncbiprotein a bioregistry.schema:0000001 ;
         go.resource:NCBI_NP,
         n2t:ncbiprotein,
         prefixcommons:ncbi.protein,
-        miriam:ncbiprotein ;
+        miriam:ncbiprotein,
+        re3data:r3d100010776 ;
     foaf:homepage "https://www.ncbi.nlm.nih.gov/protein"^^xsd:string ;
     bioregistry.schema:0000005 "CAA71118.1"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.ncbi.nlm.nih.gov/protein/$1"^^xsd:string ;
@@ -29901,6 +30267,7 @@ bioregistry:wormbase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.zx1td8,
         prefixcommons:wormbase,
         miriam:wb,
+        re3data:r3d100010424,
         uniprot.resource:WormBase,
         wikidata:P3860 ;
     foaf:homepage "https://www.wormbase.org/"^^xsd:string ;
@@ -29995,6 +30362,7 @@ bioregistry:chembl a bioregistry.schema:0000001 ;
         prefixcommons:chembl,
         miriam:chembl,
         cheminf:000412,
+        re3data:r3d100010539,
         uniprot.resource:ChEMBL ;
     foaf:homepage "https://www.ebi.ac.uk/chembl"^^xsd:string ;
     bioregistry.schema:0000005 "CHEMBL4303805"^^xsd:string ;
@@ -30168,6 +30536,7 @@ bioregistry:pdb a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.mckkb4,
         prefixcommons:pdbj,
         miriam:pdb,
+        re3data:r3d100010910,
         uniprot.resource:RCSB-PDB,
         wikidata:P638 ;
     foaf:homepage "https://www.wwpdb.org/"^^xsd:string ;
@@ -30228,7 +30597,8 @@ bioregistry:storedb a bioregistry.schema:0000001 ;
     ns2:exactMatch biocontext:STOREDB,
         n2t:storedb,
         fairsharing:FAIRsharing.6h8d2r,
-        miriam:storedb ;
+        miriam:storedb,
+        re3data:r3d100011049 ;
     foaf:homepage "https://www.storedb.org/"^^xsd:string ;
     bioregistry.schema:0000005 "STUDY1040"^^xsd:string ;
     bioregistry.schema:0000006 "https://www.storedb.org/?$1"^^xsd:string ;
@@ -30259,6 +30629,7 @@ bioregistry:drugbank a bioregistry.schema:0000001 ;
         prefixcommons:drugbank,
         miriam:drugbank,
         cheminf:000406,
+        re3data:r3d100010544,
         uniprot.resource:DrugBank,
         wikidata:P715 ;
     foaf:homepage "http://www.drugbank.ca"^^xsd:string ;
@@ -30565,6 +30936,7 @@ bioregistry:flybase a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.wrvze3,
         prefixcommons:flybase,
         miriam:fb,
+        re3data:r3d100010591,
         uniprot.resource:FlyBase,
         wikidata:P3852 ;
     foaf:homepage "http://flybase.org/"^^xsd:string ;
@@ -31291,6 +31663,7 @@ bioregistry:ncbitaxon a bioregistry.schema:0000001 ;
         prefixcommons:uniprot.taxonomy,
         miriam:taxonomy,
         ols:ncbitaxon,
+        re3data:r3d100010415,
         wikidata:P685 ;
     foaf:homepage "https://github.com/obophenotype/ncbitaxon"^^xsd:string ;
     bioregistry.schema:0000005 "2170610"^^xsd:string ;
@@ -31588,6 +31961,7 @@ bioregistry:chebi a bioregistry.schema:0000001 ;
         miriam:chebi,
         ols:chebi,
         cheminf:000407,
+        re3data:r3d100012626,
         wikidata:P683 ;
     foaf:homepage "http://www.ebi.ac.uk/chebi"^^xsd:string ;
     bioregistry.schema:0000005 "24867"^^xsd:string ;
@@ -31636,6 +32010,7 @@ bioregistry:uniprot a bioregistry.schema:0000001 ;
         fairsharing:FAIRsharing.s1ne3g,
         prefixcommons:uniprot,
         miriam:uniprot,
+        re3data:r3d100011521,
         wikidata:P352 ;
     foaf:homepage "http://www.uniprot.org"^^xsd:string ;
     bioregistry.schema:0000005 "P0DP23"^^xsd:string ;
@@ -32760,6 +33135,138 @@ bioregistry.metaresource:wikidata a bioregistry.schema:0000002 ;
     bioregistry.schema:0000006 "https://www.wikidata.org/wiki/Property:$1" ;
     bioregistry.schema:0000019 [ rdfs:label "WikiData Support" ] .
 
+bioregistry.metaresource:re3data a bioregistry.schema:0000002 ;
+    rdfs:label "Registry of Research Data Repositories" ;
+    dc:description "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." ;
+    ns1:hasPart re3data:r3d100010129,
+        re3data:r3d100010142,
+        re3data:r3d100010153,
+        re3data:r3d100010170,
+        re3data:r3d100010205,
+        re3data:r3d100010219,
+        re3data:r3d100010222,
+        re3data:r3d100010228,
+        re3data:r3d100010245,
+        re3data:r3d100010350,
+        re3data:r3d100010372,
+        re3data:r3d100010375,
+        re3data:r3d100010415,
+        re3data:r3d100010424,
+        re3data:r3d100010468,
+        re3data:r3d100010528,
+        re3data:r3d100010539,
+        re3data:r3d100010544,
+        re3data:r3d100010546,
+        re3data:r3d100010549,
+        re3data:r3d100010561,
+        re3data:r3d100010566,
+        re3data:r3d100010586,
+        re3data:r3d100010591,
+        re3data:r3d100010604,
+        re3data:r3d100010616,
+        re3data:r3d100010626,
+        re3data:r3d100010650,
+        re3data:r3d100010652,
+        re3data:r3d100010666,
+        re3data:r3d100010669,
+        re3data:r3d100010671,
+        re3data:r3d100010672,
+        re3data:r3d100010741,
+        re3data:r3d100010774,
+        re3data:r3d100010776,
+        re3data:r3d100010785,
+        re3data:r3d100010795,
+        re3data:r3d100010798,
+        re3data:r3d100010846,
+        re3data:r3d100010861,
+        re3data:r3d100010880,
+        re3data:r3d100010889,
+        re3data:r3d100010891,
+        re3data:r3d100010906,
+        re3data:r3d100010910,
+        re3data:r3d100010912,
+        re3data:r3d100010921,
+        re3data:r3d100011049,
+        re3data:r3d100011052,
+        re3data:r3d100011195,
+        re3data:r3d100011196,
+        re3data:r3d100011198,
+        re3data:r3d100011213,
+        re3data:r3d100011222,
+        re3data:r3d100011280,
+        re3data:r3d100011294,
+        re3data:r3d100011316,
+        re3data:r3d100011330,
+        re3data:r3d100011331,
+        re3data:r3d100011478,
+        re3data:r3d100011479,
+        re3data:r3d100011496,
+        re3data:r3d100011518,
+        re3data:r3d100011519,
+        re3data:r3d100011521,
+        re3data:r3d100011527,
+        re3data:r3d100011556,
+        re3data:r3d100011564,
+        re3data:r3d100011569,
+        re3data:r3d100011646,
+        re3data:r3d100011663,
+        re3data:r3d100011906,
+        re3data:r3d100011936,
+        re3data:r3d100012015,
+        re3data:r3d100012074,
+        re3data:r3d100012152,
+        re3data:r3d100012171,
+        re3data:r3d100012189,
+        re3data:r3d100012193,
+        re3data:r3d100012197,
+        re3data:r3d100012265,
+        re3data:r3d100012273,
+        re3data:r3d100012311,
+        re3data:r3d100012344,
+        re3data:r3d100012388,
+        re3data:r3d100012429,
+        re3data:r3d100012457,
+        re3data:r3d100012458,
+        re3data:r3d100012461,
+        re3data:r3d100012575,
+        re3data:r3d100012603,
+        re3data:r3d100012626,
+        re3data:r3d100012627,
+        re3data:r3d100012629,
+        re3data:r3d100012630,
+        re3data:r3d100012647,
+        re3data:r3d100012688,
+        re3data:r3d100012705,
+        re3data:r3d100012715,
+        re3data:r3d100012721,
+        re3data:r3d100012725,
+        re3data:r3d100012731,
+        re3data:r3d100012755,
+        re3data:r3d100012820,
+        re3data:r3d100012828,
+        re3data:r3d100012863,
+        re3data:r3d100012902,
+        re3data:r3d100012928,
+        re3data:r3d100013051,
+        re3data:r3d100013060,
+        re3data:r3d100013263,
+        re3data:r3d100013293,
+        re3data:r3d100013295,
+        re3data:r3d100013314,
+        re3data:r3d100013316,
+        re3data:r3d100013330,
+        re3data:r3d100013331,
+        re3data:r3d100013361,
+        re3data:r3d100013432,
+        re3data:r3d100013478,
+        re3data:r3d100013547,
+        re3data:r3d100013638,
+        re3data:r3d100013668 ;
+    foaf:homepage "https://www.re3data.org" ;
+    bioregistry.schema:0000005 "r3d100010772" ;
+    bioregistry.schema:0000006 "https://www.re3data.org/repository/$1" ;
+    bioregistry.schema:0000019 orcid:0000-0003-4221-7956 .
+
 bioregistry.metaresource:go a bioregistry.schema:0000002 ;
     rdfs:label "Gene Ontology Registry" ;
     dc:description "A database-specific registry supporting curation in the Gene Ontology" ;
diff --git a/exports/rdf/schema.jsonld b/exports/rdf/schema.jsonld
index 4ac5443ba..be3469ca5 100644
--- a/exports/rdf/schema.jsonld
+++ b/exports/rdf/schema.jsonld
@@ -13,167 +13,161 @@
   },
   "@graph": [
     {
-      "@id": "https://bioregistry.io/schema/#0000008",
+      "@id": "https://bioregistry.io/schema/#0000022",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "The pattern for identifiers in the given resource"
+        "@value": "The main contact person for a registry"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#domain": {
+        "@id": "https://bioregistry.io/schema/#0000002"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#label": {
+        "@value": "has responsible"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#range": {
+        "@id": "https://bioregistry.io/schema/#0000020"
+      }
+    },
+    {
+      "@id": "https://bioregistry.io/schema/#0000006",
+      "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
+      "http://purl.org/dc/terms/description": {
+        "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved."
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has pattern"
+        "@value": "has provider formatter"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
         "@id": "http://www.w3.org/2001/XMLSchema#string"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000020",
+      "@id": "https://bioregistry.io/schema/#0000001",
       "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
       "http://purl.org/dc/terms/description": {
-        "@value": "A person"
+        "@value": "A type for entries in the Bioregistry's registry."
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Person"
+        "@value": "Resource"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000022",
+      "@id": "https://bioregistry.io/schema/#0000007",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "The main contact person for a registry"
+        "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved."
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000002"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has responsible"
+        "@value": "has resolver formatter"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000020"
+        "@id": "http://www.w3.org/2001/XMLSchema#string"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000011",
+      "@id": "https://bioregistry.io/schema/#0000012",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource."
+        "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc."
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "provides for"
+        "@value": "is deprecated"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000001"
+        "@id": "http://www.w3.org/2001/XMLSchema#boolean"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000016",
+      "@id": "https://bioregistry.io/schema/#0000011",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix"
+        "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource."
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has canonical"
+        "@value": "provides for"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
         "@id": "https://bioregistry.io/schema/#0000001"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000003",
-      "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
-      "http://purl.org/dc/terms/description": {
-        "@value": "A type for entries in the Bioregistry's collections"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Collection"
-      }
-    },
-    {
-      "@id": "https://bioregistry.io/schema/#0000010",
+      "@id": "https://bioregistry.io/schema/#0000021",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "A download link for the given resource"
+        "@value": "The reviewer of a prefix"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has download URL"
+        "@value": "has reviewer"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "http://www.w3.org/2001/XMLSchema#string"
+        "@id": "https://bioregistry.io/schema/#0000020"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000019",
-      "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
+      "@id": "https://bioregistry.io/schema/#0000003",
+      "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
       "http://purl.org/dc/terms/description": {
-        "@value": "The responsible person for a resource"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#domain": {
-        "@id": "https://bioregistry.io/schema/#0000001"
+        "@value": "A type for entries in the Bioregistry's collections"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has responsible"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000020"
+        "@value": "Collection"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000017",
+      "@id": "https://bioregistry.io/schema/#0000019",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix"
+        "@value": "The responsible person for a resource"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "depends on"
+        "@value": "has responsible"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000001"
+        "@id": "https://bioregistry.io/schema/#0000020"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000021",
+      "@id": "https://bioregistry.io/schema/#0000016",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "The reviewer of a prefix"
+        "@value": "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has reviewer"
+        "@value": "has canonical"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000020"
+        "@id": "https://bioregistry.io/schema/#0000001"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000006",
-      "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
+      "@id": "https://bioregistry.io/schema/#0000002",
+      "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
       "http://purl.org/dc/terms/description": {
-        "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved."
-      },
-      "http://www.w3.org/2000/01/rdf-schema#domain": {
-        "@id": "https://bioregistry.io/schema/#0000001"
+        "@value": "A type for entries in the Bioregistry's metaregistry."
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has provider formatter"
-      },
-      "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "http://www.w3.org/2001/XMLSchema#string"
+        "@value": "Registry"
       }
     },
     {
@@ -193,71 +187,77 @@
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000018",
+      "@id": "https://bioregistry.io/schema/#0000008",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "Terms from the source appear in the target resource"
+        "@value": "The pattern for identifiers in the given resource"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "appears in"
+        "@value": "has pattern"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "https://bioregistry.io/schema/#0000001"
+        "@id": "http://www.w3.org/2001/XMLSchema#string"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000002",
+      "@id": "https://bioregistry.io/schema/#0000020",
       "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
       "http://purl.org/dc/terms/description": {
-        "@value": "A type for entries in the Bioregistry's metaregistry."
+        "@value": "A person"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Registry"
+        "@value": "Person"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000012",
+      "@id": "https://bioregistry.io/schema/#0000017",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc."
+        "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
         "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "is deprecated"
+        "@value": "depends on"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "http://www.w3.org/2001/XMLSchema#boolean"
+        "@id": "https://bioregistry.io/schema/#0000001"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000007",
+      "@id": "https://bioregistry.io/schema/#0000018",
       "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved."
+        "@value": "Terms from the source appear in the target resource"
       },
       "http://www.w3.org/2000/01/rdf-schema#domain": {
-        "@id": "https://bioregistry.io/schema/#0000002"
+        "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "has resolver formatter"
+        "@value": "appears in"
       },
       "http://www.w3.org/2000/01/rdf-schema#range": {
-        "@id": "http://www.w3.org/2001/XMLSchema#string"
+        "@id": "https://bioregistry.io/schema/#0000001"
       }
     },
     {
-      "@id": "https://bioregistry.io/schema/#0000001",
-      "@type": "http://www.w3.org/2000/01/rdf-schema#Class",
+      "@id": "https://bioregistry.io/schema/#0000010",
+      "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property",
       "http://purl.org/dc/terms/description": {
-        "@value": "A type for entries in the Bioregistry's registry."
+        "@value": "A download link for the given resource"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#domain": {
+        "@id": "https://bioregistry.io/schema/#0000001"
       },
       "http://www.w3.org/2000/01/rdf-schema#label": {
-        "@value": "Resource"
+        "@value": "has download URL"
+      },
+      "http://www.w3.org/2000/01/rdf-schema#range": {
+        "@id": "http://www.w3.org/2001/XMLSchema#string"
       }
     }
   ]
diff --git a/exports/rdf/schema.nt b/exports/rdf/schema.nt
index 65a85c8ea..0458df23c 100644
--- a/exports/rdf/schema.nt
+++ b/exports/rdf/schema.nt
@@ -1,77 +1,77 @@
-<https://bioregistry.io/schema/#0000019> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
-<https://bioregistry.io/schema/#0000005> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000007> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/schema/#0000006> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000011> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000011> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000005> <http://www.w3.org/2000/01/rdf-schema#label> "has example" .
-<https://bioregistry.io/schema/#0000008> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/schema/#0000005> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
 <https://bioregistry.io/schema/#0000007> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
-<https://bioregistry.io/schema/#0000002> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's metaregistry." .
+<https://bioregistry.io/schema/#0000012> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000018> <http://www.w3.org/2000/01/rdf-schema#label> "appears in" .
+<https://bioregistry.io/schema/#0000011> <http://purl.org/dc/terms/description> "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." .
 <https://bioregistry.io/schema/#0000016> <http://www.w3.org/2000/01/rdf-schema#label> "has canonical" .
-<https://bioregistry.io/schema/#0000001> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
 <https://bioregistry.io/schema/#0000018> <http://purl.org/dc/terms/description> "Terms from the source appear in the target resource" .
+<https://bioregistry.io/schema/#0000007> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000002> .
+<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
 <https://bioregistry.io/schema/#0000021> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000019> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#label> "has responsible" .
-<https://bioregistry.io/schema/#0000001> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's registry." .
-<https://bioregistry.io/schema/#0000012> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000019> <http://www.w3.org/2000/01/rdf-schema#label> "has responsible" .
-<https://bioregistry.io/schema/#0000018> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000021> <http://purl.org/dc/terms/description> "The reviewer of a prefix" .
-<https://bioregistry.io/schema/#0000005> <http://purl.org/dc/terms/description> "An identifier for a resource or metaresource." .
-<https://bioregistry.io/schema/#0000020> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
-<https://bioregistry.io/schema/#0000001> <http://www.w3.org/2000/01/rdf-schema#label> "Resource" .
+<https://bioregistry.io/schema/#0000005> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000003> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's collections" .
+<https://bioregistry.io/schema/#0000016> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000012> <http://purl.org/dc/terms/description> "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." .
+<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
+<https://bioregistry.io/schema/#0000016> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000016> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000007> <http://purl.org/dc/terms/description> "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." .
 <https://bioregistry.io/schema/#0000007> <http://www.w3.org/2000/01/rdf-schema#label> "has resolver formatter" .
-<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/schema/#0000005> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
-<https://bioregistry.io/schema/#0000012> <http://purl.org/dc/terms/description> "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." .
-<https://bioregistry.io/schema/#0000018> <http://www.w3.org/2000/01/rdf-schema#label> "appears in" .
-<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#label> "has provider formatter" .
+<https://bioregistry.io/schema/#0000003> <http://www.w3.org/2000/01/rdf-schema#label> "Collection" .
+<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#label> "has responsible" .
+<https://bioregistry.io/schema/#0000002> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
+<https://bioregistry.io/schema/#0000010> <http://purl.org/dc/terms/description> "A download link for the given resource" .
+<https://bioregistry.io/schema/#0000017> <http://purl.org/dc/terms/description> "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" .
+<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000001> <http://www.w3.org/2000/01/rdf-schema#label> "Resource" .
 <https://bioregistry.io/schema/#0000012> <http://www.w3.org/2000/01/rdf-schema#label> "is deprecated" .
-<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000011> <http://purl.org/dc/terms/description> "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." .
-<https://bioregistry.io/schema/#0000010> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000022> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000001> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's registry." .
+<https://bioregistry.io/schema/#0000008> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#label> "has download URL" .
+<https://bioregistry.io/schema/#0000021> <http://purl.org/dc/terms/description> "The reviewer of a prefix" .
 <https://bioregistry.io/schema/#0000018> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000019> <http://purl.org/dc/terms/description> "The responsible person for a resource" .
-<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000016> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000016> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000003> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's collections" .
-<https://bioregistry.io/schema/#0000022> <http://purl.org/dc/terms/description> "The main contact person for a registry" .
-<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000020> <http://purl.org/dc/terms/description> "A person" .
-<https://bioregistry.io/schema/#0000010> <http://purl.org/dc/terms/description> "A download link for the given resource" .
-<https://bioregistry.io/schema/#0000011> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000011> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000018> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000001> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
 <https://bioregistry.io/schema/#0000008> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#label> "has reviewer" .
-<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000002> .
+<https://bioregistry.io/schema/#0000011> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000003> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
 <https://bioregistry.io/schema/#0000011> <http://www.w3.org/2000/01/rdf-schema#label> "provides for" .
-<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#label> "depends on" .
-<https://bioregistry.io/schema/#0000005> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000003> <http://www.w3.org/2000/01/rdf-schema#label> "Collection" .
 <https://bioregistry.io/schema/#0000008> <http://www.w3.org/2000/01/rdf-schema#label> "has pattern" .
-<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000017> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000016> <http://purl.org/dc/terms/description> "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix" .
-<https://bioregistry.io/schema/#0000016> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000010> <http://www.w3.org/2000/01/rdf-schema#label> "has download URL" .
-<https://bioregistry.io/schema/#0000017> <http://purl.org/dc/terms/description> "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" .
-<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
+<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
+<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000019> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000007> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/schema/#0000019> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000006> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#label> "has reviewer" .
+<https://bioregistry.io/schema/#0000002> <http://www.w3.org/2000/01/rdf-schema#label> "Registry" .
+<https://bioregistry.io/schema/#0000022> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000005> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000020> <http://purl.org/dc/terms/description> "A person" .
+<https://bioregistry.io/schema/#0000021> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
 <https://bioregistry.io/schema/#0000008> <http://purl.org/dc/terms/description> "The pattern for identifiers in the given resource" .
-<https://bioregistry.io/schema/#0000012> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#boolean> .
-<https://bioregistry.io/schema/#0000007> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000002> .
+<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000022> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000002> .
+<https://bioregistry.io/schema/#0000012> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000002> <http://purl.org/dc/terms/description> "A type for entries in the Bioregistry's metaregistry." .
+<https://bioregistry.io/schema/#0000022> <http://purl.org/dc/terms/description> "The main contact person for a registry" .
 <https://bioregistry.io/schema/#0000006> <http://purl.org/dc/terms/description> "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." .
-<https://bioregistry.io/schema/#0000002> <http://www.w3.org/2000/01/rdf-schema#label> "Registry" .
-<https://bioregistry.io/schema/#0000011> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000020> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
+<https://bioregistry.io/schema/#0000010> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
+<https://bioregistry.io/schema/#0000018> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
+<https://bioregistry.io/schema/#0000005> <http://purl.org/dc/terms/description> "An identifier for a resource or metaresource." .
 <https://bioregistry.io/schema/#0000020> <http://www.w3.org/2000/01/rdf-schema#label> "Person" .
 <https://bioregistry.io/schema/#0000008> <http://www.w3.org/2000/01/rdf-schema#domain> <https://bioregistry.io/schema/#0000001> .
-<https://bioregistry.io/schema/#0000019> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000012> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/1999/02/22-rdf-syntax-ns#Property> .
-<https://bioregistry.io/schema/#0000002> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
-<https://bioregistry.io/schema/#0000003> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2000/01/rdf-schema#Class> .
+<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#string> .
+<https://bioregistry.io/schema/#0000012> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/2001/XMLSchema#boolean> .
+<https://bioregistry.io/schema/#0000017> <http://www.w3.org/2000/01/rdf-schema#label> "depends on" .
+<https://bioregistry.io/schema/#0000019> <http://purl.org/dc/terms/description> "The responsible person for a resource" .
+<https://bioregistry.io/schema/#0000006> <http://www.w3.org/2000/01/rdf-schema#label> "has provider formatter" .
+<https://bioregistry.io/schema/#0000019> <http://www.w3.org/2000/01/rdf-schema#range> <https://bioregistry.io/schema/#0000020> .
+<https://bioregistry.io/schema/#0000016> <http://purl.org/dc/terms/description> "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix" .
diff --git a/exports/registry/registry.json b/exports/registry/registry.json
index b019d4803..fb93ad92f 100644
--- a/exports/registry/registry.json
+++ b/exports/registry/registry.json
@@ -159,7 +159,8 @@
       "fairsharing": "FAIRsharing.8hcczk",
       "miriam": "addgene",
       "n2t": "addgene",
-      "prefixcommons": "addgene"
+      "prefixcommons": "addgene",
+      "re3data": "r3d100010741"
     },
     "name": "Addgene Plasmid Repository",
     "pattern": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$",
@@ -544,7 +545,8 @@
       "fairsharing": "FAIRsharing.swbypy",
       "miriam": "amoebadb",
       "n2t": "amoebadb",
-      "prefixcommons": "amoebadb"
+      "prefixcommons": "amoebadb",
+      "re3data": "r3d100012457"
     },
     "name": "AmoebaDB",
     "pattern": "^EDI_\\d+$",
@@ -798,6 +800,7 @@
       "miriam": "arachnoserver",
       "n2t": "arachnoserver",
       "prefixcommons": "arachnoserver",
+      "re3data": "r3d100012902",
       "uniprot": "ArachnoServer"
     },
     "name": "ArachnoServer",
@@ -886,7 +889,8 @@
       "fairsharing": "FAIRsharing.6k0kwd",
       "miriam": "arrayexpress",
       "n2t": "arrayexpress",
-      "prefixcommons": "arrayexpress"
+      "prefixcommons": "arrayexpress",
+      "re3data": "r3d100010222"
     },
     "name": "ArrayExpress",
     "pattern": "^[AEP]-\\w{4}-\\d+$",
@@ -924,7 +928,8 @@
       "biocontext": "ARRAYMAP",
       "fairsharing": "FAIRsharing.1fbc5y",
       "miriam": "arraymap",
-      "n2t": "arraymap"
+      "n2t": "arraymap",
+      "re3data": "r3d100012630"
     },
     "name": "ArrayMap",
     "pattern": "^[\\w\\-:,]{3,64}$",
@@ -973,7 +978,8 @@
       "miriam": "asap",
       "n2t": "asap",
       "ncbi": "ASAP",
-      "prefixcommons": "asap"
+      "prefixcommons": "asap",
+      "re3data": "r3d100010666"
     },
     "name": "A Systematic Annotation Package for Community Analysis of Genomes",
     "pattern": "^[A-Za-z0-9-]+$",
@@ -1192,7 +1198,8 @@
     "mappings": {
       "fairsharing": "FAIRsharing.aSszvY",
       "miriam": "bacdive",
-      "n2t": "bacdive"
+      "n2t": "bacdive",
+      "re3data": "r3d100013060"
     },
     "name": "Bacterial Diversity Metadatabase",
     "pattern": "^[0-9]+$",
@@ -1239,7 +1246,8 @@
     "homepage": "http://bactibase.hammamilab.org",
     "mappings": {
       "fairsharing": "FAIRsharing.5f5mfm",
-      "prefixcommons": "bactibase"
+      "prefixcommons": "bactibase",
+      "re3data": "r3d100012755"
     },
     "name": "Bactibase",
     "preferred_prefix": "bactibase",
@@ -1466,7 +1474,8 @@
       "miriam": "beetlebase",
       "n2t": "beetlebase",
       "ncbi": "BEETLEBASE",
-      "prefixcommons": "beetlebase"
+      "prefixcommons": "beetlebase",
+      "re3data": "r3d100010921"
     },
     "name": "Tribolium Genome Database -- Insertion",
     "pattern": "^TC\\d+$",
@@ -1739,6 +1748,7 @@
       "miriam": "bindingdb",
       "n2t": "bindingdb",
       "prefixcommons": "bindingdb",
+      "re3data": "r3d100012074",
       "uniprot": "BindingDB"
     },
     "name": "BindingDB",
@@ -1802,6 +1812,7 @@
       "miriam": "biogrid",
       "n2t": "biogrid",
       "prefixcommons": "biogrid",
+      "re3data": "r3d100010350",
       "uniprot": "BioGRID"
     },
     "name": "BioGRID",
@@ -2016,7 +2027,8 @@
       "fairsharing": "FAIRsharing.4m97ah",
       "miriam": "bioportal",
       "n2t": "bioportal",
-      "prefixcommons": "bioportal"
+      "prefixcommons": "bioportal",
+      "re3data": "r3d100012344"
     },
     "name": "BioPortal",
     "pattern": "^\\d+$",
@@ -2031,7 +2043,8 @@
       "biocontext": "BIOPROJECT",
       "fairsharing": "FAIRsharing.aqhv1y",
       "miriam": "bioproject",
-      "n2t": "bioproject"
+      "n2t": "bioproject",
+      "re3data": "r3d100013330"
     },
     "name": "BioProject",
     "pattern": "^PRJ[DEN][A-Z]\\d+$",
@@ -2175,7 +2188,8 @@
       "cellosaurus": "BioSamples",
       "fairsharing": "FAIRsharing.qr6pqk",
       "miriam": "biosample",
-      "n2t": "biosample"
+      "n2t": "biosample",
+      "re3data": "r3d100012828"
     },
     "name": "BioSample",
     "pattern": "^SAM[NED](\\w)?\\d+$",
@@ -2206,7 +2220,8 @@
     "example": "Yeast-cell-cycle-Irons-J-Theor-Biol-2009",
     "homepage": "https://icahn.mssm.edu/",
     "mappings": {
-      "miriam": "biosimulations"
+      "miriam": "biosimulations",
+      "re3data": "r3d100013361"
     },
     "name": "biosimulations",
     "pattern": "^[a-zA-Z0-9_-]{3,}$",
@@ -2219,7 +2234,8 @@
     "homepage": "https://biosimulators.org/",
     "mappings": {
       "fairsharing": "FAIRsharing.pwEima",
-      "miriam": "biosimulators"
+      "miriam": "biosimulators",
+      "re3data": "r3d100013432"
     },
     "name": "BioSimulators",
     "pattern": "^[a-zA-Z0-9-_]+$",
@@ -2233,7 +2249,8 @@
     "mappings": {
       "fairsharing": "FAIRsharing.mtjvme",
       "miriam": "biostudies",
-      "n2t": "biostudies"
+      "n2t": "biostudies",
+      "re3data": "r3d100012627"
     },
     "name": "BioStudies database",
     "pattern": "^S-[A-Z]{4}[A-Z\\d\\-]+$",
@@ -2264,7 +2281,8 @@
       "biocontext": "BIOTOOLS",
       "fairsharing": "FAIRsharing.63520c",
       "miriam": "biotools",
-      "n2t": "biotools"
+      "n2t": "biotools",
+      "re3data": "r3d100013668"
     },
     "name": "BioTools",
     "pattern": "^[-A-Za-z0-9\\_]*$",
@@ -2325,7 +2343,8 @@
     "homepage": "https://www.atlassian.com/",
     "mappings": {
       "fairsharing": "FAIRsharing.fc3431",
-      "miriam": "bitbucket"
+      "miriam": "bitbucket",
+      "re3data": "r3d100013478"
     },
     "name": "Bitbucket",
     "pattern": "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$",
@@ -2480,6 +2499,7 @@
       "miriam": "brenda",
       "n2t": "brenda",
       "prefixcommons": "brenda",
+      "re3data": "r3d100010616",
       "uniprot": "BRENDA"
     },
     "name": "BRENDA, The Comprehensive Enzyme Information System",
@@ -2874,7 +2894,8 @@
       "fairsharing": "FAIRsharing.xgcyyn",
       "miriam": "cath",
       "n2t": "cath",
-      "prefixcommons": "cath"
+      "prefixcommons": "cath",
+      "re3data": "r3d100012629"
     },
     "name": "CATH Protein Structural Domain Superfamily",
     "pattern": "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$",
@@ -3252,6 +3273,7 @@
       "fairsharing": "FAIRsharing.hkk309",
       "miriam": "cellosaurus",
       "n2t": "cellosaurus",
+      "re3data": "r3d100013293",
       "wikidata": "P3289"
     },
     "name": "Cellosaurus",
@@ -3359,7 +3381,8 @@
     "example": "10087",
     "homepage": "http://birdgenenames.org/cgnc/",
     "mappings": {
-      "prefixcommons": "cgnc"
+      "prefixcommons": "cgnc",
+      "re3data": "r3d100012429"
     },
     "name": "Chicken Gene Nomenclature Consortium",
     "pattern": "^\\d+$",
@@ -3449,6 +3472,7 @@
       "ols": "chebi",
       "ontobee": "CHEBI",
       "prefixcommons": "chebi",
+      "re3data": "r3d100012626",
       "wikidata": "P683"
     },
     "name": "Chemical Entities of Biological Interest",
@@ -3482,6 +3506,7 @@
       "fairsharing": "FAIRsharing.m3jtpg",
       "miriam": "chembl",
       "prefixcommons": "chembl",
+      "re3data": "r3d100010539",
       "uniprot": "ChEMBL"
     },
     "name": "ChEMBL",
@@ -3662,6 +3687,7 @@
       "miriam": "chemspider",
       "n2t": "chemspider",
       "prefixcommons": "chemspider",
+      "re3data": "r3d100010205",
       "wikidata": "P661"
     },
     "name": "ChemSpider",
@@ -4034,6 +4060,7 @@
       "fairsharing": "FAIRsharing.wx5r6f",
       "miriam": "clinvar",
       "n2t": "clinvar",
+      "re3data": "r3d100013331",
       "wikidata": "P1929"
     },
     "name": "ClinVar Variation",
@@ -5035,6 +5062,7 @@
       "go": "ComplexPortal",
       "miriam": "complexportal",
       "n2t": "complexportal",
+      "re3data": "r3d100013295",
       "uniprot": "ComplexPortal",
       "wikidata": "P7718"
     },
@@ -5166,7 +5194,8 @@
     "homepage": "https://www.animalgenome.org",
     "mappings": {
       "fairsharing": "FAIRsharing.IziuCK",
-      "miriam": "corrdb"
+      "miriam": "corrdb",
+      "re3data": "r3d100011496"
     },
     "name": "CorrDB",
     "pattern": "^[0-9]+$",
@@ -5420,7 +5449,8 @@
       "fairsharing": "FAIRsharing.t3nprm",
       "miriam": "cryptodb",
       "n2t": "cryptodb",
-      "prefixcommons": "cryptodb"
+      "prefixcommons": "cryptodb",
+      "re3data": "r3d100012265"
     },
     "name": "CryptoDB",
     "pattern": "^\\w+$",
@@ -5694,7 +5724,8 @@
     "example": "000017",
     "homepage": "https://dandiarchive.org/",
     "mappings": {
-      "miriam": "dandi"
+      "miriam": "dandi",
+      "re3data": "r3d100013638"
     },
     "name": "Distributed Archives for Neurophysiology Data Integration",
     "pattern": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$",
@@ -5945,6 +5976,7 @@
       "n2t": "dbsnp",
       "ncbi": "dbSNP",
       "prefixcommons": "dbsnp",
+      "re3data": "r3d100010652",
       "uniprot": "dbSNP"
     },
     "name": "NCBI dbSNP",
@@ -6232,6 +6264,7 @@
       "fairsharing": "FAIRsharing.q9j2e3",
       "miriam": "depod",
       "n2t": "depod",
+      "re3data": "r3d100011936",
       "uniprot": "DEPOD"
     },
     "name": "Human Dephosphorylation Database",
@@ -6392,6 +6425,7 @@
       "go": "dictyBase",
       "ncbi": "dictyBase",
       "prefixcommons": "dictybase",
+      "re3data": "r3d100010586",
       "uniprot": "dictyBase"
     },
     "name": "dictyBase",
@@ -6591,6 +6625,7 @@
       "miriam": "disprot",
       "n2t": "disprot",
       "prefixcommons": "disprot",
+      "re3data": "r3d100010561",
       "uniprot": "DisProt"
     },
     "name": "DisProt",
@@ -7005,6 +7040,7 @@
       "miriam": "drugbank",
       "n2t": "drugbank",
       "prefixcommons": "drugbank",
+      "re3data": "r3d100010544",
       "uniprot": "DrugBank",
       "wikidata": "P715"
     },
@@ -7092,7 +7128,8 @@
     "example": "ACC-1",
     "homepage": "https://www.dsmz.de",
     "mappings": {
-      "cellosaurus": "DSMZ"
+      "cellosaurus": "DSMZ",
+      "re3data": "r3d100010219"
     },
     "name": "Deutsche Sammlung von Mikroorganismen und Zellkulturen",
     "preferred_prefix": "dsmz",
@@ -7162,7 +7199,8 @@
     "example": "0000012b-5661-2f63-2f73-b43980000000",
     "homepage": "https://hawaii.eagle-i.net",
     "mappings": {
-      "cellosaurus": "eagle-i"
+      "cellosaurus": "eagle-i",
+      "re3data": "r3d100011564"
     },
     "name": "eagle-i",
     "preferred_prefix": "eaglei",
@@ -7344,6 +7382,7 @@
       "miriam": "echobase",
       "n2t": "echobase",
       "prefixcommons": "echobase",
+      "re3data": "r3d100011646",
       "uniprot": "EchoBASE"
     },
     "name": "EchoBASE post-genomic database for Escherichia coli",
@@ -7467,7 +7506,8 @@
       "miriam": "ecogene",
       "n2t": "ecogene",
       "ncbi": "EcoGene",
-      "prefixcommons": "ecogene"
+      "prefixcommons": "ecogene",
+      "re3data": "r3d100010546"
     },
     "name": "Database of Escherichia coli Sequence and Function",
     "pattern": "^EG\\d+$",
@@ -8099,7 +8139,8 @@
       "cellosaurus": "ENCODE",
       "fairsharing": "FAIRsharing.v0hbjs",
       "miriam": "encode",
-      "n2t": "encode"
+      "n2t": "encode",
+      "re3data": "r3d100013051"
     },
     "name": "Encyclopedia of DNA Elements",
     "pattern": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$",
@@ -8142,6 +8183,7 @@
       "n2t": "ensembl",
       "ncbi": "ENSEMBL",
       "prefixcommons": "ensembl",
+      "re3data": "r3d100010228",
       "uniprot": "Ensembl",
       "wikidata": "P594"
     },
@@ -8207,6 +8249,7 @@
       "miriam": "ensembl.bacteria",
       "n2t": "ensembl.bacteria",
       "prefixcommons": "ensembl.bacteria",
+      "re3data": "r3d100011195",
       "uniprot": "EnsemblBacteria"
     },
     "name": "Ensembl Bacteria",
@@ -8225,6 +8268,7 @@
       "miriam": "ensembl.fungi",
       "n2t": "ensembl.fungi",
       "prefixcommons": "ensembl.fungi",
+      "re3data": "r3d100011196",
       "uniprot": "EnsemblFungi"
     },
     "name": "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.",
@@ -8243,6 +8287,7 @@
       "miriam": "ensembl.metazoa",
       "n2t": "ensembl.metazoa",
       "prefixcommons": "ensembl.metazoa",
+      "re3data": "r3d100011198",
       "uniprot": "EnsemblMetazoa"
     },
     "name": "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa.",
@@ -8299,7 +8344,8 @@
     "homepage": "https://envipath.org/",
     "mappings": {
       "fairsharing": "FAIRsharing.g0c5qn",
-      "miriam": "envipath"
+      "miriam": "envipath",
+      "re3data": "r3d100012715"
     },
     "name": "enviPath",
     "pattern": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$",
@@ -8429,7 +8475,8 @@
       "agroportal": "EOL",
       "bioportal": "EOL",
       "fairsharing": "FAIRsharing.w7bw2y",
-      "ols": "eol"
+      "ols": "eol",
+      "re3data": "r3d100011663"
     },
     "name": "Environment Ontology for Livestock",
     "pattern": "^\\d{7}$",
@@ -8842,7 +8889,8 @@
       "biocontext": "FACEBASE",
       "fairsharing": "FAIRsharing.mqvqde",
       "miriam": "facebase",
-      "n2t": "facebase"
+      "n2t": "facebase",
+      "re3data": "r3d100013263"
     },
     "name": "FaceBase Data Repository",
     "pattern": "^FB\\d{8}$",
@@ -8857,7 +8905,8 @@
       "biocontext": "FAIRSHARING",
       "fairsharing": "FAIRsharing.2abjs5",
       "miriam": "fairsharing",
-      "n2t": "fairsharing"
+      "n2t": "fairsharing",
+      "re3data": "r3d100010142"
     },
     "name": "FAIRsharing",
     "pattern": "^bsg-[dscp]?\\d{6}$",
@@ -9198,6 +9247,7 @@
     "example": "6472",
     "homepage": "http://fishbase.org",
     "mappings": {
+      "re3data": "r3d100010912",
       "wikidata": "P938"
     },
     "name": "FishBase",
@@ -9290,7 +9340,8 @@
     "mappings": {
       "fairsharing": "FAIRsharing.veg2d6",
       "miriam": "flowrepository",
-      "n2t": "flowrepository"
+      "n2t": "flowrepository",
+      "re3data": "r3d100011280"
     },
     "name": "FlowRepository",
     "pattern": "^FR\\-FCM\\-\\w{4}$",
@@ -9333,6 +9384,7 @@
       "n2t": "fb",
       "ncbi": "FLYBASE",
       "prefixcommons": "flybase",
+      "re3data": "r3d100010591",
       "uniprot": "FlyBase",
       "wikidata": "P3852"
     },
@@ -9469,7 +9521,8 @@
       "biocontext": "FOODB.COMPOUND",
       "biolink": "foodb.compound",
       "miriam": "foodb.compound",
-      "n2t": "foodb.compound"
+      "n2t": "foodb.compound",
+      "re3data": "r3d100012152"
     },
     "name": "FooDB Compound",
     "pattern": "^FDB\\d+$",
@@ -9817,7 +9870,8 @@
       "biocontext": "FUNGIDB",
       "fairsharing": "FAIRsharing.xf30yc",
       "miriam": "fungidb",
-      "n2t": "fungidb"
+      "n2t": "fungidb",
+      "re3data": "r3d100011906"
     },
     "name": "FungiDB",
     "pattern": "^[A-Za-z_0-9]+$",
@@ -10175,6 +10229,7 @@
       "fairsharing": "FAIRsharing.9kahy4",
       "go": "GenBank",
       "prefixcommons": "genbank",
+      "re3data": "r3d100010528",
       "uniprot": "GenBank"
     },
     "name": "GenBank",
@@ -10191,6 +10246,7 @@
       "miriam": "genecards",
       "n2t": "genecards",
       "prefixcommons": "genecards",
+      "re3data": "r3d100012015",
       "uniprot": "GeneCards"
     },
     "name": "GeneCards",
@@ -10212,6 +10268,7 @@
       "n2t": "genedb",
       "ncbi": "GeneDB",
       "prefixcommons": "genedb",
+      "re3data": "r3d100010626",
       "uniprot": "GeneDB",
       "wikidata": "P3382"
     },
@@ -10422,7 +10479,8 @@
     "example": "3532759",
     "homepage": "https://www.geonames.org",
     "mappings": {
-      "fairsharing": "FAIRsharing.56a0Uj"
+      "fairsharing": "FAIRsharing.56a0Uj",
+      "re3data": "r3d100010245"
     },
     "name": "GeoNames",
     "pattern": "^\\d+$",
@@ -10486,7 +10544,8 @@
       "fairsharing": "FAIRsharing.e7skwg",
       "miriam": "giardiadb",
       "n2t": "giardiadb",
-      "prefixcommons": "giardiadb"
+      "prefixcommons": "giardiadb",
+      "re3data": "r3d100012458"
     },
     "name": "GiardiaDB",
     "pattern": "^\\w+$",
@@ -10503,7 +10562,8 @@
     "homepage": "https://github.com/",
     "mappings": {
       "fairsharing": "FAIRsharing.c55d5e",
-      "miriam": "github"
+      "miriam": "github",
+      "re3data": "r3d100010375"
     },
     "name": "github",
     "pattern": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$",
@@ -10605,7 +10665,8 @@
       "fairsharing": "FAIRsharing.k5k0yh",
       "miriam": "glycomedb",
       "n2t": "glycomedb",
-      "prefixcommons": "glycomedb"
+      "prefixcommons": "glycomedb",
+      "re3data": "r3d100011527"
     },
     "name": "GlycomeDB",
     "pattern": "^\\w+$",
@@ -10660,7 +10721,8 @@
     "mappings": {
       "biocontext": "GLYTOUCAN",
       "miriam": "glytoucan",
-      "n2t": "glytoucan"
+      "n2t": "glytoucan",
+      "re3data": "r3d100012388"
     },
     "name": "GlyTouCan",
     "pattern": "^G[0-9]{5}[A-Z]{2}$",
@@ -10789,7 +10851,8 @@
       "biocontext": "GNPIS",
       "fairsharing": "FAIRsharing.dw22y3",
       "miriam": "gnpis",
-      "n2t": "gnpis"
+      "n2t": "gnpis",
+      "re3data": "r3d100012647"
     },
     "name": "GnpIS",
     "pattern": "^[A-Za-z0-9]+$",
@@ -11272,7 +11335,8 @@
       "miriam": "greengenes",
       "n2t": "greengenes",
       "ncbi": "Greengenes",
-      "prefixcommons": "greengenes"
+      "prefixcommons": "greengenes",
+      "re3data": "r3d100010549"
     },
     "name": "16S rRNA gene database",
     "pattern": "^\\d+$",
@@ -11432,7 +11496,8 @@
       "biocontext": "GUDMAP",
       "fairsharing": "FAIRsharing.910c39",
       "miriam": "gudmap",
-      "n2t": "gudmap"
+      "n2t": "gudmap",
+      "re3data": "r3d100012193"
     },
     "name": "Genitourinary Development Molecular Anatomy Project",
     "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$",
@@ -12183,7 +12248,8 @@
       "cellosaurus": "hPSCreg",
       "fairsharing": "FAIRsharing.7C0aVE",
       "miriam": "hpscreg",
-      "n2t": "hpscreg"
+      "n2t": "hpscreg",
+      "re3data": "r3d100012863"
     },
     "name": "Human Pluripotent Stem Cell Registry",
     "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$",
@@ -12955,7 +13021,8 @@
       "biocontext": "IMEX",
       "miriam": "imex",
       "n2t": "imex",
-      "prefixcommons": "imex"
+      "prefixcommons": "imex",
+      "re3data": "r3d100010669"
     },
     "name": "International Molecular Exchange",
     "pattern": "^IM-\\d+(-?)(\\d+?)$",
@@ -13368,6 +13435,7 @@
       "miriam": "intact",
       "n2t": "intact",
       "prefixcommons": "intact",
+      "re3data": "r3d100010671",
       "uniprot": "IntAct"
     },
     "name": "IntAct protein interaction database",
@@ -13429,6 +13497,7 @@
       "ncbi": "InterPro",
       "obofoundry": "ipr",
       "prefixcommons": "interpro",
+      "re3data": "r3d100010798",
       "uniprot": "InterPro",
       "wikidata": "P2926"
     },
@@ -13475,7 +13544,8 @@
       "fairsharing": "FAIRsharing.t31wcb",
       "miriam": "irefweb",
       "n2t": "irefweb",
-      "prefixcommons": "irefweb"
+      "prefixcommons": "irefweb",
+      "re3data": "r3d100012725"
     },
     "name": "iRefWeb",
     "pattern": "^\\d+$",
@@ -13589,6 +13659,7 @@
     "homepage": "https://www.itis.gov/",
     "mappings": {
       "fairsharing": "FAIRsharing.t19hpa",
+      "re3data": "r3d100011213",
       "wikidata": "P815"
     },
     "name": "Integrated Taxonomic Information System",
@@ -13811,7 +13882,8 @@
     "homepage": "https://kaggle.com",
     "mappings": {
       "miriam": "kaggle",
-      "n2t": "kaggle"
+      "n2t": "kaggle",
+      "re3data": "r3d100012705"
     },
     "name": "Kaggle",
     "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$",
@@ -14358,7 +14430,8 @@
       "biocontext": "LICEBASE",
       "fairsharing": "FAIRsharing.c7w81a",
       "miriam": "licebase",
-      "n2t": "licebase"
+      "n2t": "licebase",
+      "re3data": "r3d100013547"
     },
     "name": "LiceBase",
     "pattern": "^[A-Za-z0-9\\-\\/]+$",
@@ -14860,6 +14933,7 @@
       "n2t": "maizegdb.locus",
       "ncbi": "MaizeGDB",
       "prefixcommons": "maizegdb",
+      "re3data": "r3d100010795",
       "uniprot": "MaizeGDB"
     },
     "name": "MaizeGDB Locus",
@@ -15001,7 +15075,8 @@
     "homepage": "http://matrixdb.univ-lyon1.fr/",
     "mappings": {
       "fairsharing": "FAIRsharing.91yrz6",
-      "prefixcommons": "matrixdb"
+      "prefixcommons": "matrixdb",
+      "re3data": "r3d100010672"
     },
     "name": "MatrixDB",
     "preferred_prefix": "matrixdb",
@@ -15343,6 +15418,7 @@
       "cellosaurus": "MetaboLights",
       "miriam": "metabolights",
       "n2t": "metabolights",
+      "re3data": "r3d100011556",
       "wikidata": "P3890"
     },
     "name": "MetaboLights Compound",
@@ -15369,7 +15445,8 @@
       "fairsharing": "FAIRsharing.yytevr",
       "go": "MetaCyc",
       "miriam": "metacyc.compound",
-      "n2t": "metacyc.compound"
+      "n2t": "metacyc.compound",
+      "re3data": "r3d100011294"
     },
     "name": "Metabolic Encyclopedia of metabolic and other pathways",
     "pattern": "^[A-Za-z0-9+_.%-:]+$",
@@ -15444,7 +15521,8 @@
     "mappings": {
       "biocontext": "METLIN",
       "miriam": "metlin",
-      "n2t": "metlin"
+      "n2t": "metlin",
+      "re3data": "r3d100012311"
     },
     "name": "Metabolite and Tandem Mass Spectrometry Database",
     "pattern": "^\\d{4}$",
@@ -15829,7 +15907,8 @@
       "biocontext": "MICROSCOPE",
       "fairsharing": "FAIRsharing.3t5qc3",
       "miriam": "microscope",
-      "n2t": "microscope"
+      "n2t": "microscope",
+      "re3data": "r3d100012928"
     },
     "name": "MicroScope",
     "pattern": "^\\d+$",
@@ -15975,6 +16054,7 @@
       "n2t": "mirbase",
       "ncbi": "miRBase",
       "prefixcommons": "mirbase",
+      "re3data": "r3d100010566",
       "wikidata": "P2870"
     },
     "name": "miRBase pre-miRNA",
@@ -16470,7 +16550,8 @@
       "fairsharing": "FAIRsharing.5rb3fk",
       "miriam": "modeldb",
       "n2t": "modeldb",
-      "prefixcommons": "modeldb"
+      "prefixcommons": "modeldb",
+      "re3data": "r3d100011330"
     },
     "name": "ModelDB",
     "pattern": "^\\d+$",
@@ -16982,7 +17063,8 @@
       "miriam": "mycobank",
       "n2t": "mycobank",
       "ncbi": "MycoBank",
-      "prefixcommons": "mycobank"
+      "prefixcommons": "mycobank",
+      "re3data": "r3d100011222"
     },
     "name": "Fungal Nomenclature and Species Bank",
     "pattern": "^\\d+$",
@@ -17103,7 +17185,8 @@
       "fairsharing": "FAIRsharing.2sqcxs",
       "miriam": "nasc",
       "n2t": "nasc",
-      "prefixcommons": "nasc"
+      "prefixcommons": "nasc",
+      "re3data": "r3d100010906"
     },
     "name": "NASC code",
     "pattern": "^(\\w+)?\\d+$",
@@ -17238,7 +17321,8 @@
     "homepage": "https://www.ncbi.nlm.nih.gov/",
     "mappings": {
       "biocontext": "NCBIAssembly",
-      "miriam": "assembly"
+      "miriam": "assembly",
+      "re3data": "r3d100012688"
     },
     "name": "Assembly",
     "pattern": "^[a-zA-Z0-9_\\.]+$",
@@ -17257,7 +17341,8 @@
     "homepage": "https://www.ncbi.nlm.nih.gov/genome",
     "mappings": {
       "biocontext": "NCBIGenome",
-      "edam": "2787"
+      "edam": "2787",
+      "re3data": "r3d100010785"
     },
     "name": "NCBI Genome",
     "pattern": "^\\d+$",
@@ -17307,6 +17392,7 @@
       "n2t": "ncbigene",
       "ncbi": "GeneID",
       "prefixcommons": "ncbigene",
+      "re3data": "r3d100010650",
       "wikidata": "P351"
     },
     "name": "Entrez Gene",
@@ -17353,7 +17439,8 @@
       "go": "NCBI_NP",
       "miriam": "ncbiprotein",
       "n2t": "ncbiprotein",
-      "prefixcommons": "ncbi.protein"
+      "prefixcommons": "ncbi.protein",
+      "re3data": "r3d100010776"
     },
     "name": "NCBI Protein",
     "pattern": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$",
@@ -17406,6 +17493,7 @@
       "ols": "ncbitaxon",
       "ontobee": "NCBITaxon",
       "prefixcommons": "uniprot.taxonomy",
+      "re3data": "r3d100010415",
       "wikidata": "P685"
     },
     "name": "NCBI Taxonomy",
@@ -17443,6 +17531,7 @@
     ],
     "repository": "https://github.com/obophenotype/ncbitaxon",
     "synonyms": [
+      "NCBI Taxonomy",
       "NCBITaxon",
       "NCBI_Taxon_ID",
       "NCBI_taxid",
@@ -20435,6 +20524,7 @@
       "miriam": "pathwaycommons",
       "n2t": "pathwaycommons",
       "prefixcommons": "pathwaycommons",
+      "re3data": "r3d100012731",
       "uniprot": "PathwayCommons"
     },
     "name": "Pathway Commons",
@@ -20704,6 +20794,7 @@
       "n2t": "pdb",
       "ncbi": "PDB",
       "prefixcommons": "pdbj",
+      "re3data": "r3d100010910",
       "uniprot": "RCSB-PDB",
       "wikidata": "P638"
     },
@@ -20973,6 +21064,7 @@
       "miriam": "peptideatlas",
       "n2t": "peptideatlas",
       "prefixcommons": "peptideatlas",
+      "re3data": "r3d100010889",
       "uniprot": "PeptideAtlas"
     },
     "name": "PeptideAtlas",
@@ -21136,7 +21228,8 @@
       "cellosaurus": "Progenetix",
       "fairsharing": "FAIRsharing.65tdnz",
       "miriam": "pgx",
-      "n2t": "pgx"
+      "n2t": "pgx",
+      "re3data": "r3d100012820"
     },
     "name": "Progenetix",
     "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$",
@@ -21263,7 +21356,8 @@
     "mappings": {
       "biocontext": "PHENOLEXPLORER",
       "miriam": "phenolexplorer",
-      "n2t": "phenolexplorer"
+      "n2t": "phenolexplorer",
+      "re3data": "r3d100012197"
     },
     "name": "Phenol-Explorer",
     "pattern": "^\\d+$",
@@ -21637,7 +21731,8 @@
       "miriam": "plasmodb",
       "n2t": "plasmodb",
       "ncbi": "ApiDB_PlasmoDB",
-      "prefixcommons": "plasmodb"
+      "prefixcommons": "plasmodb",
+      "re3data": "r3d100011569"
     },
     "name": "PlasmoDB",
     "pattern": "^\\w+$",
@@ -21859,6 +21954,7 @@
       "n2t": "pombase",
       "ncbi": "PomBase",
       "prefixcommons": "pombase",
+      "re3data": "r3d100011478",
       "uniprot": "PomBase",
       "wikidata": "P6245"
     },
@@ -22498,6 +22594,7 @@
       "miriam": "pubchem.compound",
       "n2t": "pubchem.compound",
       "prefixcommons": "pubchem.compound",
+      "re3data": "r3d100010129",
       "wikidata": "P662"
     },
     "name": "PubChem CID",
@@ -22939,6 +23036,7 @@
       "miriam": "reactome",
       "n2t": "reactome",
       "prefixcommons": "reactome",
+      "re3data": "r3d100010861",
       "uniprot": "Reactome",
       "wikidata": "P3937"
     },
@@ -22988,6 +23086,7 @@
       "miriam": "rebase",
       "n2t": "rebase",
       "prefixcommons": "rebase",
+      "re3data": "r3d100012171",
       "uniprot": "REBASE"
     },
     "name": "REBASE restriction enzyme database",
@@ -23275,7 +23374,8 @@
       "go": "RHEA",
       "miriam": "rhea",
       "n2t": "rhea",
-      "prefixcommons": "rhea"
+      "prefixcommons": "rhea",
+      "re3data": "r3d100010891"
     },
     "name": "Rhea, the Annotated Reactions Database",
     "pattern": "^\\d{5}$",
@@ -23712,6 +23812,7 @@
       "miriam": "sabiork.reaction",
       "n2t": "sabiork.reaction",
       "prefixcommons": "sabiork.reaction",
+      "re3data": "r3d100011052",
       "uniprot": "SABIO-RK"
     },
     "name": "SABIO-RK Reaction",
@@ -23790,6 +23891,7 @@
       "fairsharing": "FAIRsharing.i1F3Hb",
       "miriam": "sasbdb",
       "n2t": "sasbdb",
+      "re3data": "r3d100012273",
       "uniprot": "SASBDB"
     },
     "name": "Small Angle Scattering Biological Data Bank",
@@ -24770,7 +24872,8 @@
       "fairsharing": "FAIRsharing.z4agsr",
       "miriam": "soybase",
       "n2t": "soybase",
-      "ncbi": "SoyBase"
+      "ncbi": "SoyBase",
+      "re3data": "r3d100010846"
     },
     "name": "Glycine max Genome Database",
     "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$",
@@ -25007,7 +25110,8 @@
       "biocontext": "STOREDB",
       "fairsharing": "FAIRsharing.6h8d2r",
       "miriam": "storedb",
-      "n2t": "storedb"
+      "n2t": "storedb",
+      "re3data": "r3d100011049"
     },
     "name": "Store DB",
     "namespace_in_lui": true,
@@ -25085,6 +25189,7 @@
       "miriam": "string",
       "n2t": "string",
       "prefixcommons": "string",
+      "re3data": "r3d100010604",
       "uniprot": "STRING"
     },
     "name": "Search Tool for Retrieval of Interacting Genes/Proteins",
@@ -25235,6 +25340,7 @@
       "fairsharing": "FAIRsharing.pxr7x2",
       "miriam": "slm",
       "n2t": "swisslipid",
+      "re3data": "r3d100012603",
       "uniprot": "SwissLipids",
       "wikidata": "P8691"
     },
@@ -25352,7 +25458,8 @@
       "fairsharing": "FAIRsharing.psn0h2",
       "miriam": "t3db",
       "n2t": "t3db",
-      "prefixcommons": "t3db"
+      "prefixcommons": "t3db",
+      "re3data": "r3d100012189"
     },
     "name": "Toxin and Toxin Target Database",
     "pattern": "^T3D\\d+$",
@@ -25837,7 +25944,8 @@
       "biocontext": "TOPFIND",
       "fairsharing": "FAIRsharing.rkpmhn",
       "miriam": "topfind",
-      "n2t": "topfind"
+      "n2t": "topfind",
+      "re3data": "r3d100012721"
     },
     "name": "TopFind",
     "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$",
@@ -25909,7 +26017,8 @@
       "fairsharing": "FAIRsharing.zcn4w4",
       "miriam": "treebase",
       "n2t": "treebase",
-      "prefixcommons": "treebase"
+      "prefixcommons": "treebase",
+      "re3data": "r3d100010170"
     },
     "name": "TreeBASE",
     "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$",
@@ -25940,7 +26049,8 @@
       "biocontext": "TRICHDB",
       "fairsharing": "FAIRsharing.pv0ezt",
       "miriam": "trichdb",
-      "n2t": "trichdb"
+      "n2t": "trichdb",
+      "re3data": "r3d100012461"
     },
     "name": "TrichDB",
     "pattern": "^\\w+$",
@@ -25956,7 +26066,8 @@
       "fairsharing": "FAIRsharing.fs1z27",
       "go": "TriTrypDB",
       "miriam": "tritrypdb",
-      "n2t": "tritrypdb"
+      "n2t": "tritrypdb",
+      "re3data": "r3d100011479"
     },
     "name": "TriTrypDB",
     "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+$",
@@ -26306,7 +26417,8 @@
       "fairsharing": "FAIRsharing.ge1c3p",
       "miriam": "unigene",
       "n2t": "unigene",
-      "prefixcommons": "unigene"
+      "prefixcommons": "unigene",
+      "re3data": "r3d100010774"
     },
     "name": "UniGene",
     "pattern": "^\\d+$",
@@ -26357,7 +26469,8 @@
       "go": "UniParc",
       "miriam": "uniparc",
       "n2t": "uniparc",
-      "prefixcommons": "uniparc"
+      "prefixcommons": "uniparc",
+      "re3data": "r3d100011519"
     },
     "name": "UniProt Archive",
     "pattern": "^UPI[A-F0-9]{10}$",
@@ -26416,6 +26529,7 @@
       "n2t": "uniprot",
       "ncbi": "UniProt",
       "prefixcommons": "uniprot",
+      "re3data": "r3d100011521",
       "wikidata": "P352"
     },
     "name": "UniProt Protein",
@@ -26688,7 +26802,8 @@
     "homepage": "https://www.uniprot.org/",
     "mappings": {
       "edam": "2346",
-      "miriam": "uniref"
+      "miriam": "uniref",
+      "re3data": "r3d100011518"
     },
     "name": "UniRef",
     "pattern": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$",
@@ -26734,7 +26849,8 @@
       "miriam": "unite",
       "n2t": "unite",
       "ncbi": "UNITE",
-      "prefixcommons": "unite"
+      "prefixcommons": "unite",
+      "re3data": "r3d100011316"
     },
     "name": "Molecular database for the identification of fungi",
     "pattern": "^UDB\\d{6}$",
@@ -27011,7 +27127,8 @@
       "miriam": "vectorbase",
       "n2t": "vectorbase",
       "ncbi": "VectorBase",
-      "prefixcommons": "vectorbase"
+      "prefixcommons": "vectorbase",
+      "re3data": "r3d100010880"
     },
     "name": "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens",
     "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$",
@@ -27030,7 +27147,8 @@
     "homepage": "https://vega.archive.ensembl.org/index.html",
     "mappings": {
       "fairsharing": "FAIRsharing.mr293q",
-      "prefixcommons": "vega"
+      "prefixcommons": "vega",
+      "re3data": "r3d100012575"
     },
     "name": "Vertebrate Genome Annotation Database",
     "preferred_prefix": "vega",
@@ -27044,7 +27162,8 @@
     "example": "VB.Ob.3736.GRSM125",
     "homepage": "http://vegbank.org/",
     "mappings": {
-      "miriam": "vegbank"
+      "miriam": "vegbank",
+      "re3data": "r3d100010153"
     },
     "name": "VegBank",
     "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$",
@@ -27198,7 +27317,8 @@
       "biocontext": "VIRALZONE",
       "fairsharing": "FAIRsharing.tppk10",
       "miriam": "viralzone",
-      "n2t": "viralzone"
+      "n2t": "viralzone",
+      "re3data": "r3d100013314"
     },
     "name": "ViralZone",
     "pattern": "^\\d+$",
@@ -27702,6 +27822,7 @@
       "miriam": "wikipathways",
       "n2t": "wikipathways",
       "prefixcommons": "wikipathways",
+      "re3data": "r3d100013316",
       "wikidata": "P2410"
     },
     "name": "WikiPathways",
@@ -27776,6 +27897,7 @@
       "n2t": "wb",
       "ncbi": "WormBase",
       "prefixcommons": "wormbase",
+      "re3data": "r3d100010424",
       "uniprot": "WormBase",
       "wikidata": "P3860"
     },
@@ -27951,6 +28073,7 @@
       "n2t": "xenbase",
       "ncbi": "Xenbase",
       "prefixcommons": "xenbase",
+      "re3data": "r3d100011331",
       "uniprot": "Xenbase"
     },
     "name": "Xenbase",
@@ -28289,6 +28412,7 @@
     "example": "4390079",
     "homepage": "https://zenodo.org",
     "mappings": {
+      "re3data": "r3d100010468",
       "wikidata": "P4901"
     },
     "name": "Zenodo",
@@ -28417,6 +28541,7 @@
       "biocontext": "ZINC",
       "miriam": "zinc",
       "n2t": "zinc",
+      "re3data": "r3d100010372",
       "wikidata": "P2084"
     },
     "name": "ZINC is not Commercial",
diff --git a/exports/registry/registry.tsv b/exports/registry/registry.tsv
index 99e9b0f95..68ca03d57 100644
--- a/exports/registry/registry.tsv
+++ b/exports/registry/registry.tsv
@@ -1,24 +1,24 @@
-identifier	name	homepage	description	pattern	example	email	uri_format	download.owl	download.obo	synonyms	deprecated	aberowl	agroportal	biocontext	bioportal	cellosaurus	cheminf	cropoct	ecoportal	edam	miriam	n2t	obofoundry	ols	ontobee	prefixcc	prefixcommons	uniprot	wikidata	part_of	provides	has_canonical
-3dmet	3D Metabolites	http://www.3dmet.dna.affrc.go.jp/	3DMET is a database collecting three-dimensional structures of natural metabolites.	^B\d{5}$	B00162		http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1				False			3DMET						2635	3dmet	3dmet					3dmet		P2796			
-4dn.biosource	4D Nucleome Data Portal Biosource	https://data.4dnucleome.org/biosources	The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases.	^4DN[A-Z]{2}[A-Z0-9]{7}$	4DNSR73BT2A2		https://data.4dnucleome.org/biosources/$1			4DN	False					4DN					4dn						4dn					
-4dn.replicate	4D Nucleome Data Portal Experiment Replicate	https://data.4dnucleome.org/experiment-set-replicates/	Database portal containing replicate experiments of different assays and samples		4DNESWX1J3QU		https://data.4dnucleome.org/experiment-set-replicates/$1				False																					
-aao	Amphibian gross anatomy	http://github.com/seger/aao	A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.			david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/AAO_$1				True			AAO									aao				aao					
-abcd	AntiBodies Chemically Defined database	https://web.expasy.org/abcd/	The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies		AD834		https://web.expasy.org/abcd/ABCD_$1				False					ABCD												ABCD				
-abm	Applied Biological Materials cell line products	https://www.abmgood.com/Cell-Biology.html	Cell line collections		T0599		https://www.abmgood.com/catalogsearch/result/?cat=&q=$1				False					ABM																
-abs	Annotated Regulatory Binding Sites	http://genome.crg.es/datasets/abs2005/	The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.	^A\d+$	A0014		http://genome.crg.es/datasets/abs2005/entries/$1.html				False			ABS						2741	abs	abs					abs					
-ac	Activity Streams	http://www.w3.org/ns/activitystreams	Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities.		Add		http://www.w3.org/ns/activitystreams#$1				False																					
-aceview.worm	Aceview Worm	https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm	AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.	^[a-z0-9-]+$	aap-1		https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1				False			ACEVIEW.WORM							aceview.worm	aceview.worm					aceview.worm					
-addexbio	AddexBio cell line products	https://www.addexbio.com/productshow?id=4	Cell line collections		C0020004/4992		https://www.addexbio.com/productdetail?pid=$1				False					AddexBio																
-addgene	Addgene Plasmid Repository	http://addgene.org/	Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.	^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$	50943		http://addgene.org/$1				False										addgene	addgene					addgene					
-ado	Alzheimer's Disease Ontology	https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO	Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining.		0000001	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/ADO_$1				False	ADO			ADO								ado	ado								
-adw	Animal natural history and life history	http://www.animaldiversity.org	Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.	^[A-Z_a-z]+$	Lycalopex_vetulus	adw_geeks@umich.edu	https://animaldiversity.org/accounts/$1				True	ADW		ADW	ADW						adw	adw	adw									
-aeo	Anatomical Entity Ontology	https://github.com/obophenotype/human-developmental-anatomy-ontology/	AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology	^\d{7}$	0001017	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/AEO_$1		https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo	AEO_RETIRED	True	AEO		AEO	AEO								aeo	aeo	AEO							
-aero	Adverse Event Reporting Ontology	http://purl.obolibrary.org/obo/aero	The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events	^\d{7}$	0000125	mcourtot@gmail.com	http://purl.obolibrary.org/obo/AERO_$1				True	AERO		AERO	AERO								aero									
-affy.probeset	Affymetrix Probeset	http://www.affymetrix.com/	An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.	^\d{4,}((_[asx])?_at)$	243002_at		https://www.affymetrix.com/LinkServlet?probeset=$1				False			AFFY.PROBESET							affy.probeset	affy.probeset										
-afo	Allotrope Merged Ontology Suite	https://www.allotrope.org/	Allotrope Merged Ontology Suite								False	AFO			AFO									afo								
-aftol.taxonomy	Assembling the Fungal Tree of Life - Taxonomy	https://aftol.umn.edu	The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.	^\d+$	959		http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1				False			AFTOL.TAXONOMY							aftol.taxonomy	aftol.taxonomy										
-agilent.probe	Agilent Probe	https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-2320/A-MEXP-2320.adf.txt	This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array  contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011).  Probe annotation was taken from A-GEOD-16699.	^A_\d+_.+$	A_24_P98555						False																					
-agricola	Agricultural Online Access	http://agricola.nal.usda.gov/	AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.	^\d+$	50018		https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1			AGR|AGRICOLA_ID	False			AGRICOLA							agricola	agricola										
+identifier	name	homepage	description	pattern	example	email	uri_format	download.owl	download.obo	synonyms	deprecated	aberowl	agroportal	biocontext	bioportal	cellosaurus	cheminf	cropoct	ecoportal	edam	miriam	n2t	obofoundry	ols	ontobee	prefixcc	prefixcommons	re3data	uniprot	wikidata	part_of	provides	has_canonical
+3dmet	3D Metabolites	http://www.3dmet.dna.affrc.go.jp/	3DMET is a database collecting three-dimensional structures of natural metabolites.	^B\d{5}$	B00162		http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1				False			3DMET						2635	3dmet	3dmet					3dmet			P2796			
+4dn.biosource	4D Nucleome Data Portal Biosource	https://data.4dnucleome.org/biosources	The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases.	^4DN[A-Z]{2}[A-Z0-9]{7}$	4DNSR73BT2A2		https://data.4dnucleome.org/biosources/$1			4DN	False					4DN					4dn						4dn						
+4dn.replicate	4D Nucleome Data Portal Experiment Replicate	https://data.4dnucleome.org/experiment-set-replicates/	Database portal containing replicate experiments of different assays and samples		4DNESWX1J3QU		https://data.4dnucleome.org/experiment-set-replicates/$1				False																						
+aao	Amphibian gross anatomy	http://github.com/seger/aao	A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.			david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/AAO_$1				True			AAO									aao				aao						
+abcd	AntiBodies Chemically Defined database	https://web.expasy.org/abcd/	The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies		AD834		https://web.expasy.org/abcd/ABCD_$1				False					ABCD													ABCD				
+abm	Applied Biological Materials cell line products	https://www.abmgood.com/Cell-Biology.html	Cell line collections		T0599		https://www.abmgood.com/catalogsearch/result/?cat=&q=$1				False					ABM																	
+abs	Annotated Regulatory Binding Sites	http://genome.crg.es/datasets/abs2005/	The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.	^A\d+$	A0014		http://genome.crg.es/datasets/abs2005/entries/$1.html				False			ABS						2741	abs	abs					abs						
+ac	Activity Streams	http://www.w3.org/ns/activitystreams	Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities.		Add		http://www.w3.org/ns/activitystreams#$1				False																						
+aceview.worm	Aceview Worm	https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm	AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.	^[a-z0-9-]+$	aap-1		https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1				False			ACEVIEW.WORM							aceview.worm	aceview.worm					aceview.worm						
+addexbio	AddexBio cell line products	https://www.addexbio.com/productshow?id=4	Cell line collections		C0020004/4992		https://www.addexbio.com/productdetail?pid=$1				False					AddexBio																	
+addgene	Addgene Plasmid Repository	http://addgene.org/	Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.	^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$	50943		http://addgene.org/$1				False										addgene	addgene					addgene	r3d100010741					
+ado	Alzheimer's Disease Ontology	https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO	Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining.		0000001	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/ADO_$1				False	ADO			ADO								ado	ado									
+adw	Animal natural history and life history	http://www.animaldiversity.org	Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.	^[A-Z_a-z]+$	Lycalopex_vetulus	adw_geeks@umich.edu	https://animaldiversity.org/accounts/$1				True	ADW		ADW	ADW						adw	adw	adw										
+aeo	Anatomical Entity Ontology	https://github.com/obophenotype/human-developmental-anatomy-ontology/	AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology	^\d{7}$	0001017	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/AEO_$1		https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo	AEO_RETIRED	True	AEO		AEO	AEO								aeo	aeo	AEO								
+aero	Adverse Event Reporting Ontology	http://purl.obolibrary.org/obo/aero	The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events	^\d{7}$	0000125	mcourtot@gmail.com	http://purl.obolibrary.org/obo/AERO_$1				True	AERO		AERO	AERO								aero										
+affy.probeset	Affymetrix Probeset	http://www.affymetrix.com/	An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.	^\d{4,}((_[asx])?_at)$	243002_at		https://www.affymetrix.com/LinkServlet?probeset=$1				False			AFFY.PROBESET							affy.probeset	affy.probeset											
+afo	Allotrope Merged Ontology Suite	https://www.allotrope.org/	Allotrope Merged Ontology Suite								False	AFO			AFO									afo									
+aftol.taxonomy	Assembling the Fungal Tree of Life - Taxonomy	https://aftol.umn.edu	The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.	^\d+$	959		http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1				False			AFTOL.TAXONOMY							aftol.taxonomy	aftol.taxonomy											
+agilent.probe	Agilent Probe	https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-2320/A-MEXP-2320.adf.txt	This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array  contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011).  Probe annotation was taken from A-GEOD-16699.	^A_\d+_.+$	A_24_P98555						False																						
+agricola	Agricultural Online Access	http://agricola.nal.usda.gov/	AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.	^\d+$	50018		https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1			AGR|AGRICOLA_ID	False			AGRICOLA							agricola	agricola											
 agrkb	Alliance of Genome Resources Knowledge Base	https://www.alliancegenome.org	"The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.
 
 The Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:
@@ -29,718 +29,718 @@ The Alliance of Genome Resources was founded by the following Model Organism dat
 - [RGD](https://rgd.mcw.edu) - Rat Genome Database
 - [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database
 - [FlyBase](https://flybase.org)
-- [Xenbase](https://www.xenbase.org)"	^[1-9][0-9]{14}$	100000000000001	cjmungall@lbl.gov	https://www.alliancegenome.org/accession/$1				False																					
-agro	Agronomy Ontology	https://github.com/AgriculturalSemantics/agro	AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities	^\d{8}$	00020007	m.a.laporte@cgiar.org	http://purl.obolibrary.org/obo/AGRO_$1		https://raw.githubusercontent.com/KrishnaTO/agro/master/agro.obo		False	AGRO	AGRO	AGRO	AGRO								agro	agro	AGRO							
-agrovoc	Agronomy Vocabulary	https://data.apps.fao.org/catalog/organization/agrovoc	AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages.	^[a-z0-9]+$	2842		http://aims.fao.org/aos/agrovoc/c_$1				False		AGROVOC						AGROVOC													
-aism	Ontology for the Anatomy of the Insect SkeletoMuscular system	https://github.com/insect-morphology/aism	The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.	^\d{7}$	0000027	entiminae@gmail.com	http://purl.obolibrary.org/obo/AISM_$1				False	AISM			AISM								aism	aism	AISM							
-allergome	Allergome	http://www.allergome.org/	Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.	^\d+$	1948		http://www.allergome.org/script/dettaglio.php?id_molecule=$1				False			ALLERGOME							allergome	allergome					allergome	Allergome				
-alzforum.mutation	Alzforum Mutations	https://www.alzforum.org/mutations	Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.		app-d678n-tottori		https://www.alzforum.org/mutations/$1			Alzforum_mut	False																					
-amoebadb	AmoebaDB	http://amoebadb.org/amoeba/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^EDI_\d+$	EDI_244000		https://amoebadb.org/amoeba/app/record/gene/$1				False			AMOEBADB							amoebadb	amoebadb					amoebadb					
-amphx	The Amphioxus Development and Anatomy Ontology	https://github.com/EBISPOT/amphx_ontology	An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).	^\d+$	1000160	hescriva@obs-banyuls.fr	http://purl.obolibrary.org/obo/AMPHX_$1				False	AMPHX			AMPHX								amphx	amphx	AMPHX							
-antibodyregistry	Antibody Registry	http://antibodyregistry.org/	The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.	^\d{6}$	493771		http://antibodyregistry.org/AB_$1				False			ANTIBODYREGISTRY							antibodyregistry	antibodyregistry										
-antweb	AntWeb ID	http://www.antweb.org/	AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.	^casent\d+(\-D\d+)?$	casent0106247		http://www.antweb.org/specimen.do?name=$1				False			ANTWEB							antweb	antweb					antweb		P5299			
-aop	AOPWiki	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	98		https://aopwiki.org/aops/$1				False			AOP							aop	aop										
-aop.events	AOPWiki (Key Event)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	3		https://aopwiki.org/events/$1				False			AOP.EVENTS							aop.events	aop.events										
-aop.relationships	AOPWiki (Key Event Relationship)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	5		https://aopwiki.org/relationships/$1				False			AOP.RELATIONSHIPS							aop.relationships	aop.relationships										
-aop.stressor	AOPWiki (Stressor)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	9		https://aopwiki.org/stressors/$1				False			AOP.STRESSOR							aop.stressor	aop.stressor										
-apaonto	Psychology Ontology	https://bioportal.bioontology.org/ontologies/APAONTO	Ontology from the APA		Abdomen		http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1				False	APAONTO			APAONTO																	
-apd	Antimicrobial Peptide Database	http://aps.unmc.edu/AP/	The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.	^\d{5}$	01001		http://aps.unmc.edu/AP/database/query_output.php?ID=$1				False			APD							apd	apd					apd					
-aphidbase.transcript	AphidBase Transcript	http://www.aphidbase.com/aphidbase	AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.	^ACYPI\d{6}(-RA)?$	ACYPI000159		http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1				False			APHIDBASE.TRANSCRIPT							aphidbase.transcript	aphidbase.transcript										
-apid.interactions	APID Interactomes	http://cicblade.dep.usal.es:8080/APID/	APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	P01116		http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1				False			APID.INTERACTIONS							apid.interactions	apid.interactions									uniprot	
-apo	Ascomycete phenotype ontology	http://www.yeastgenome.org/	A structured controlled vocabulary for the phenotypes of Ascomycete fungi.	^\d{7}$	0000184	stacia@stanford.edu	https://www.yeastgenome.org/observable/APO:$1				False	APO		YPO	APO								apo	apo	APO							
-apollosv	Apollo Structured Vocabulary	https://github.com/ApolloDev/apollo-sv	Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models	^\d{8}$	00000443	hoganwr@ufl.edu	http://purl.obolibrary.org/obo/APOLLO_SV_$1				False	APOLLO_SV			APOLLO-SV								apollo_sv	apollo_sv	APOLLO_SV							
-arachnoserver	ArachnoServer	http://www.arachnoserver.org/	ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.	^AS\d{6}$	AS000060		http://www.arachnoserver.org/toxincard.html?id=$1				False			ARACHNOSERVER						2578	arachnoserver	arachnoserver					arachnoserver	ArachnoServer				
-araport	Arabidopsis Information Portal	https://www.araport.org/	Website with general information about Arabidopsis and functionalities such as a genomic viewer		AT1G01010		https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1				False																	Araport				
-ardb	Antibiotic Resistance Genes Database	http://ardb.cbcb.umd.edu/	The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.	^[A-Z_]{3}[0-9]{4,}$	CAE46076		http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term=$1				False			ARDB							ardb	ardb										
-ark	Archival Resource Key	http://n2t.net/	An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type.	^/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$	/12345/fk1234		http://n2t.net/ark:$1				False			ARK							ark	ark										
-aro	Antibiotic Resistance Ontology	https://github.com/arpcard/aro	Antibiotic resistance genes and mutations	^\d{7}$	1000001	mcarthua@mcmaster.ca	http://purl.obolibrary.org/obo/ARO_$1				False	ARO		ARO	ARO								aro	aro	ARO							
-arrayexpress	ArrayExpress	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.	^[AEP]-\w{4}-\d+$	E-MEXP-1712		https://www.ebi.ac.uk/arrayexpress/experiments/$1				False			ARRAYEXPRESS		ArrayExpress					arrayexpress	arrayexpress					arrayexpress					
-arrayexpress.platform	ArrayExpress Platform	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.	^[AEP]-\w{4}-\d+$	A-GEOD-50		https://www.ebi.ac.uk/arrayexpress/arrays/$1				False			ARRAYEXPRESS.PLATFORM							arrayexpress.platform	arrayexpress.platform										
-arraymap	ArrayMap	https://www.arraymap.org	arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.	^[\w\-:,]{3,64}$	icdom:8500_3		https://www.arraymap.org/pgx:$1				False			ARRAYMAP							arraymap	arraymap										
-arxiv	arXiv	https://arxiv.org/	arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.	^(\w+(\-\w+)?(\.\w+)?)?\d{4,7}(\.\d+(v\d+)?)?$	0807.4956v1		https://arxiv.org/abs/$1				False			ARXIV							arxiv	arxiv					arxiv					
-asap	A Systematic Annotation Package for Community Analysis of Genomes	http://asap.ahabs.wisc.edu/asap/home.php	ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.	^[A-Za-z0-9-]+$	ABE-0009634		http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1				False			ASAP							asap	asap					asap					
-ascl	Astrophysics Source Code Library	http://ascl.net/	The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).	^[0-9\.]+$	1801.012		http://ascl.net/$1				False			ASCL							ascl	ascl										
-asin	Amazon Standard Identification Number	https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182	Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.	^[0-9]{10}$	0471491039		https://amzn.com/$1				False			ASIN							asin	asin										
-aspgd.locus	Aspergillus Genome Database	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1				False			ASPGD.LOCUS							aspgd.locus	aspgd.locus										
-aspgd.protein	AspGD Protein	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1				False			ASPGD.PROTEIN							aspgd.protein	aspgd.protein										
-asrp	Arabidopsis Small RNA Project	https://asrp.danforthcenter.org/	Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes.		ASRP1423		http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1				False																asrp					
-atc	Anatomical Therapeutic Chemical Classification System	http://www.whocc.no/atc_ddd_index/	The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels;  Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level).  The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.	^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$	A10BA02		http://www.whocc.no/atc_ddd_index/?code=$1			ATC_code|ATTC	False	ATC		ATC	ATC					3103	atc	atc					atc		P267			
-atcc	American Type Culture Collection	https://www.lgcstandards-atcc.org	The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.	^([A-Z]+-)?\d+$	11303		https://www.atcc.org/products/$1			ATCC|ATCC number|ATCC(dna)|ATCC(in host)	False			ATCC		ATCC					atcc	atcc										
-atcvet	Anatomical Therapeutic Chemical Vetinary	http://www.whocc.no/atcvet/atcvet_index/	The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.	^Q[A-Z0-9]+$	QJ51RV02		http://www.whocc.no/atcvet/atcvet_index/?code=$1				False			ATCVET							atcvet	atcvet										
-atfdb.family	Animal TFDB Family	http://www.bioguo.org/AnimalTFDB/family_index.php	The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.	^\w+$	CUT		http://www.bioguo.org/AnimalTFDB/family.php?fam=$1				False			ATFDB.FAMILY							atfdb.family	atfdb.family										
-ato	Amphibian taxonomy	http://www.amphibanat.org	Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource	^\d{7}$	0000000	david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/ATO_$1				True	ATO		ATO	ATO								ato									
-atol	Animal Trait Ontology for Livestock	http://www.atol-ontology.com	ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.	^\d{7}$	0002233	pylebail@rennes.inra.fr		https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl			False	ATOL	ATOL		ATOL									atol								
-autdb	AutDB	http://autism.mindspec.org/autdb/	AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.	^[A-Z]+[A-Z-0-9]{2,}$	ADA		http://autism.mindspec.org/GeneDetail/$1				False			AUTDB							autdb	autdb										
-bacdive	Bacterial Diversity Metadatabase	https://bacdive.dsmz.de/	BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.	^[0-9]+$	131392		https://bacdive.dsmz.de/strain/$1				False										bacdive	bacdive										
-bacmap.biog	BacMap Biography	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.	^\d+$	1050		http://bacmap.wishartlab.com/organisms/$1				False			BACMAP.BIOG							bacmap.biog	bacmap.biog										
-bacmap.map	BacMap Map	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.	^\w+(\_)?\d+(\.\d+)?$	AP011135		http://bacmap.wishartlab.com/maps/$1/index.html				False			BACMAP.MAP							bacmap.map	bacmap.map										
-bactibase	Bactibase	http://bactibase.hammamilab.org	Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.		BAC045		http://bactibase.hammamilab.org/$1				False																bactibase					
-bams	Brain Architecture Knowledge Management System Neuroanatomical Ontology	https://bams1.org	BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.								True																					
-bao	BioAssay Ontology	http://bioassayontology.org	The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.	^\d{7}$	0002989		http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_$1			BAO	False	BAO		BAO	BAO						bao	bao		bao	BAO							
-bbkg	Blue Brain Project Knowledge Graph	https://portal.bluebrain.epfl.ch	Blue Brain Project's published data as knowledge graphs and Web Studios.	^[-\w]+(?:\/[-\w]+)(?:\/\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b)$	topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/$1				False										bbkg											
-bbtp	Blue Brain Project Topological sampling Knowledge Graph	https://portal.bluebrain.epfl.ch	"Input data and analysis results for the paper ""Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1				False										bbtp											
-bcgo	Beta Cell Genomics Ontology	https://github.com/obi-bcgo/bcgo	An application ontology built for beta cell genomics studies.	^\d{7}$	0000015	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/BCGO_$1	https://github.com/obi-bcgo/bcgo/raw/master/ontology/bcgo.owl			True	BCGO		BCGO	BCGO	BCGO							bcgo		BCGO							
-bcio	The Behaviour Change Intervention Ontology	https://www.humanbehaviourchange.org/	The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.	^\d{6}$	040000			http://humanbehaviourchange.org/ontology/bcio.owl			False	BCI-O			BCI-O									bcio								
-bco	Biological Collections Ontology	https://github.com/BiodiversityOntologies/bco	An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.	^\d{7}$	0000081	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/BCO_$1				False	BCO	BCO	BCO	BCO				BCO				bco	bco	BCO							
-bcrc	BCRC Strain Collection Catalog	https://catalog.bcrc.firdi.org.tw	Cell line collections	^\d+$	60316		https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1				False					BCRC																
-bcrj	Banco de Celulas do Rio de Janeiro	http://bcrj.org.br/celula/bcrj	Cell line collections	^\d{4}$	0278		http://bcrj.org.br/celula/$1				False					BCRJ																
-bdgp.est	Berkeley Drosophila Genome Project EST database	https://www.ncbi.nlm.nih.gov/dbEST/index.html	The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).	^\w+(\.)?(\d+)?$	EY223054.1		https://www.ncbi.nlm.nih.gov/nucest/$1				False			BDGP.EST							bdgp.est	bdgp.est										dbest
-bdgp.insertion	BDGP insertion DB	http://flypush.imgen.bcm.tmc.edu/pscreen/	BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.	^\w+$	KG09531		http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1				False			BDGP.INSERTION							bdgp.insertion	bdgp.insertion										
-bdsc	Bloomington Drosophila Stock Center	https://bdsc.indiana.edu/about/mission.html	The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.	^\d+$	33607		https://bdsc.indiana.edu/stocks/$1				False										bdsc	bdsc										
-beetlebase	Tribolium Genome Database -- Insertion	http://beetlebase.org/	BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.	^TC\d+$	TC010103		http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1				False			BEETLEBASE							beetlebase	beetlebase					beetlebase					
-begdb	Benchmark Energy & Geometry Database	http://www.begdb.com	The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.	^[0-9]+$	4214		http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1				False			BEGDB							begdb	begdb										
-beiresources	BEI Resources	https://www.beiresources.org	Cell line collections		MRA-253		https://www.beiresources.org/Catalog/cellBanks/$1.aspx			BEI_Resources	False					BEI_Resources																
-bel	Biological Expression Language	https://biological-expression-language.github.io/	The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents.		9-1-1 Complex						False																					
-bfo	Basic Formal Ontology	http://ifomis.org/bfo/	The upper level ontology upon which OBO Foundry ontologies are built.	^\d{7}$	0000001	phismith@buffalo.edu	http://purl.obolibrary.org/obo/BFO_$1				False	BFO	BFO	BFO	BFO								bfo	bfo	BFO							
-bgee.family	Bgee family	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.	^(ENSFM|ENSGTV:)\d+$	ENSFM00500000270089		http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1				False			BGEE.FAMILY							bgee.family	bgee.family										
-bgee.gene	Bgee gene	https://bgee.org/	Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.	^[A-Za-z]+\d+$	FBgn0000015		https://bgee.org/?page=gene&gene_id=$1				False			BGEE.GENE							bgee.gene	bgee.gene										
-bgee.organ	Bgee organ	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.	^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$	EHDAA:2185		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1				False			BGEE.ORGAN							bgee.organ	bgee.organ										
-bgee.stage	Bgee stage	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.	^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$	HsapDO:0000004		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1				False			BGEE.STAGE							bgee.stage	bgee.stage										
-bido	Bibliometric Data Ontology	http://www.sparontologies.net/ontologies/bido	An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.		CategorialBibliometricData		http://purl.org/spar/bido/$1				False																					
-bigg.compartment	BiGG Compartment	http://bigg.ucsd.edu/compartments/	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.	^[a-z_A-Z]+$	c		http://bigg.ucsd.edu/compartments/$1				False			BIGG.COMPARTMENT							bigg.compartment	bigg.compartment										
-bigg.metabolite	BiGG Metabolite	http://bigg.ucsd.edu/universal/metabolites	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes.	^[a-z_A-Z0-9]+$	12dgr161		http://bigg.ucsd.edu/models/universal/metabolites/$1				False			BIGG.METABOLITE							bigg.metabolite	bigg.metabolite										
-bigg.model	BiGG Model	http://bigg.ucsd.edu/models	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.	^[a-z_A-Z0-9]+$	iECABU_c1320		http://bigg.ucsd.edu/models/$1				False			BIGG.MODEL							bigg.model	bigg.model										
-bigg.reaction	BiGG Reaction	http://bigg.ucsd.edu/universal/reactions	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.	^[a-z_A-Z0-9]+$	13GS		http://bigg.ucsd.edu/models/universal/reactions/$1				False			BIGG.REACTION							bigg.reaction	bigg.reaction										
-bila	Bilateria anatomy	http://4dx.embl.de/4DXpress	This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource.		0000000	henrich@embl.de	http://purl.obolibrary.org/obo/BILA_$1				True			BILA									bila									
-bindingdb	BindingDB	https://www.bindingdb.org	BindingDB is the first public database of protein-small molecule affinity data.	^\w\d+$	e999		http://www.bindingdb.org/compact/$1				False			BINDINGDB							bindingdb	bindingdb					bindingdb	BindingDB				
-biocarta.pathway	BioCarta Pathway	https://www.biocarta.com/	BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.	^([hm]\_)?\w+Pathway$	h_aktPathway		https://cgap.nci.nih.gov/Pathways/BioCarta/$1				False			BIOCARTA.PATHWAY							biocarta.pathway	biocarta.pathway										
-biocatalogue.service	BioCatalogue Service	https://www.biocatalogue.org/	The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.	^\d+$	614		https://www.biocatalogue.org/services/$1				False			BIOCATALOGUE.SERVICE							biocatalogue.service	biocatalogue.service										
-biocyc	BioCyc collection of metabolic pathway databases	http://biocyc.org	BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.	^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$	ECOLI:CYT-D-UBIOX-CPLX		http://biocyc.org/getid?id=$1				False			BIOCYC						2104	biocyc	biocyc					biocyc	BioCyc				
-biogrid	BioGRID	http://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	31623		http://thebiogrid.org/$1				False			BIOGRID							biogrid	biogrid					biogrid	BioGRID				
-biogrid.interaction	BioGRID Interactions	https://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	2649230	md.tyers@umontreal.ca	https://thebiogrid.org/interaction/$1				False									2628										biogrid		
-biolegend	BioLegend	https://www.biolegend.com	BioLegend is a life sciences supply vendor.	^\d+$	3403		https://www.biolegend.com/Default.aspx?ID=6664&productid=$1				False																					
-biolink	Biolink Model	https://biolink.github.io/biolink-model/	A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.	^\S+$	Gene		https://w3id.org/biolink/vocab/$1				False	BIOLINK			BIOLINK						biolink											
-biominder	Bio-MINDER Tissue Database	https://datalab.rwth-aachen.de/MINDER	Database of the dielectric properties of biological tissues.	^[a-z0-9\-]+$	aef4c195-9cf9-46db-a12a-7cfd1ff3eec3		https://datalab.rwth-aachen.de/MINDER/resource/$1				False			BIOMINDER							biominder	biominder										
-biomodels.db	BioModels Database	https://www.ebi.ac.uk/biomodels/	BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.	^((BIOMD|MODEL)\d{10})|(BMID\d{12})$	BIOMD0000000048		https://www.ebi.ac.uk/biomodels/$1			BIOMD	False			BIOMODELS.DB							biomodels.db	biomodels.db										
-biomodels.kisao	Kinetic Simulation Algorithm Ontology	https://github.com/SED-ML/KiSAO	The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.	^\d+$	0000057	jonrkarr@gmail.com	https://www.biomodels.net/kisao/KISAO#KISAO_$1			kisao	False	KISAO		KISAO	KISAO						biomodels.kisao	biomodels.kisao	kisao	kisao	KISAO		kisao					
-biomodels.teddy	Terminology for Description of Dynamics	http://teddyontology.sourceforge.net/	The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.	^\d+$	0000066		https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1	http://svn.code.sf.net/p/teddyontology/code/teddy/tags/current/teddy-inferred.owl		teddy	False	TEDDY		BIOMODELS.TEDDY	TEDDY						biomodels.teddy	biomodels.teddy		teddy			teddy					
-biomodels.vocabulary	SBML RDF Vocabulary	http://biomodels.net/rdf/vocabulary.rdf	Vocabulary used in the RDF representation of SBML models.	^[A-Za-z]+$	rateRule		http://biomodels.net/rdf/vocabulary.rdf#$1				False			BIOMODELS.VOCABULARY							biomodels.vocabulary	biomodels.vocabulary										
-bionumbers	BioNumbers	https://bionumbers.hms.harvard.edu	BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.	^\d+$	104674		https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1				False			BIONUMBERS						2660	bionumbers	bionumbers					bionumbers					
-bioportal	BioPortal	http://bioportal.bioontology.org/	BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.	^\d+$	1046		http://bioportal.bioontology.org/ontologies/$1				False			BIOPORTAL							bioportal	bioportal					bioportal					
-bioproject	BioProject	http://trace.ddbj.nig.ac.jp/bioproject/	BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.	^PRJ[DEN][A-Z]\d+$	PRJDB3		https://www.ncbi.nlm.nih.gov/bioproject/?term=$1				False			BIOPROJECT							bioproject	bioproject										
-bioregistry	Bioregistry	https://bioregistry.io	The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.		bioregistry	cthoyt@gmail.com	https://bioregistry.io/registry/$1				False																					
-bioregistry.collection	Bioregistry Collections	https://bioregistry.io/collection	Manually curated collections of resources stored in the bioregistry	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/collection/$1				False																					
-bioregistry.registry	Bioregistry Metaregistry	https://bioregistry.io/metaregistry/	The Bioregistry's meta-registry		miriam	cthoyt@gmail.com	https://bioregistry.io/metaregistry/$1				False																					
-bioregistry.schema	Bioregistry Schema	https://bioregistry.io/schema	Schema for the export of the Bioregistry as RDF	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/schema/#$1				False																					
-biorxiv	bioRxiv	https://biorxiv.org	The bioRxiv is a preprint server for biology	^(\d{4}\.\d{2}\.\d{2}\.)?\d{6,8}(v\d{1,3})?$	2022.07.08.499378		https://www.biorxiv.org/content/10.1101/$1				False																					
-biosample	BioSample	https://www.ebi.ac.uk/biosamples/	The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.	^SAM[NED](\w)?\d+$	SAMEA2397676		https://www.ebi.ac.uk/biosamples/sample/$1			biosamples	False			BIOSAMPLE		BioSamples					biosample	biosample										
-biosimulations	biosimulations	https://icahn.mssm.edu/	BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools.	^[a-zA-Z0-9_-]{3,}$	Yeast-cell-cycle-Irons-J-Theor-Biol-2009		https://biosimulations.org/projects/$1				False										biosimulations											
-biosimulators	BioSimulators	https://biosimulators.org/	BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).	^[a-zA-Z0-9-_]+$	vcell		https://biosimulators.org/simulators/$1				False										biosimulators											
-biostudies	BioStudies database	https://www.ebi.ac.uk/biostudies/	The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.	^S-[A-Z]{4}[A-Z\d\-]+$	S-EPMC6266652		https://www.ebi.ac.uk/biostudies/studies/$1				False										biostudies	biostudies										
-biosystems	BioSystems	https://www.ncbi.nlm.nih.gov/biosystems/	The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.	^\d+$	001		https://www.ncbi.nlm.nih.gov/biosystems/$1				False			BIOSYSTEMS							biosystems	biosystems					biosystems					
-biotools	BioTools	https://bio.tools/	BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.	^[-A-Za-z0-9\_]*$	uniprotkb		https://bio.tools/$1				False			BIOTOOLS							biotools	biotools										
-biozil	BIOZIL	https://www.biozol.de/en	Redistributor of bilogics and biomedical supplies		ls-c35719-120		https://www.biozol.de/en/product/$1				False																					
-birnlex	Biomedical Informatics Research Network Lexicon	https://bioportal.bioontology.org/ontologies/BIRNLEX	The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.	^\d+$	2023		http://uri.neuinfo.org/nif/nifstd/birnlex_$1				False	BIRNLEX			BIRNLEX																	
-biro	Bibliographic Reference Ontology	http://www.sparontologies.net/ontologies/biro	An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.		BibliographicRecord		http://purl.org/spar/biro/$1				False																					
-bitbucket	Bitbucket	https://www.atlassian.com/	Bitbucket is a Git-based source code repository hosting service owned by Atlassian.	^[0-9A-Za-z-_\.]+/[0-9A-Za-z-_\.]+$	andreadega/systems-biology-compiler		https://bitbucket.org/$1				False										bitbucket											
-bitterdb.cpd	BitterDB Compound	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.	^\d+$	46		http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1				False			BITTERDB.CPD							bitterdb.cpd	bitterdb.cpd										
-bitterdb.rec	BitterDB Receptor	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.	^\d+$	1		http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1				False			BITTERDB.REC							bitterdb.rec	bitterdb.rec										
-bko	SBGN Bricks data and ontology	http://www.sbgnbricks.org/	SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way.	^\d+$	0000204	adrienrougny@gmail.com	http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1				False	BKO			BKO																	
-bmrb	Biological Magnetic Resonance Data Bank	http://www.bmrb.wisc.edu/	BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.	^(bmr|bmse|bmst)?[0-9]{1,6}$	15000		http://rest.bmrb.wisc.edu/bmrb/$1/html				False										bmrb							BMRB				
-bmrb.restraint	NMR Restraints Grid	https://restraintsgrid.bmrb.io/NRG/MRGridServlet	The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.	^\d+$	28789		https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1				False																					
-bold.taxonomy	Barcode of Life database	http://www.boldsystems.org/	The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.	^\d+$	27267		http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1				False			BOLD.TAXONOMY							bold.taxonomy	bold.taxonomy										
-bootstrep	Gene Regulation Ontology	http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html				vlee@ebi.ac.uk	http://purl.obolibrary.org/obo/BOOTSTREP_$1				True			BOOTSTREP									bootstrep									
-bpdb	Bio-Pesticides DataBase	https://sitem.herts.ac.uk/aeru/bpdb/index.htm	Database of biopesticides maintained by the University of Hertfordshire 	^\d+$	2404		https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm				False																					
-brenda	BRENDA, The Comprehensive Enzyme Information System	https://www.brenda-enzymes.org/	BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.	^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$	1.1.1.1		https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1				False			BRENDA							brenda	brenda					brenda	BRENDA				
-brenda.ligand	BRENDA Ligand	https://www.brenda-enzymes.de/ligand.php	Information for ligands in the BRENDA database.	^\d+$	278		https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1				False																					
-brenda.ligandgroup	BRENDA Ligand Group	https://www.brenda-enzymes.de/ligand.php	Information for ligand groups (chemical classes).	^\d+$	18030		https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1				False																					
-broad	Broad Fungal Genome Initiative	https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/	Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.	^S\d+$	S7000002168151102		https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1				False			BROAD							broad	broad										
-bs	Biosapiens Protein Feature Ontology	https://github.com/The-Sequence-Ontology/SO-Ontologies	SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.	^\d+$	00042				https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/subsets/biosapiens.obo		False																					
-bspo	Biological Spatial Ontology	https://github.com/obophenotype/biological-spatial-ontology	An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.	^\d{7}$	0000029	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/BSPO_$1		https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo		False	BSPO		BSPO	BSPO								bspo	bspo	BSPO							
-bto	BRENDA tissue / enzyme source	http://www.brenda-enzymes.org	The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.	^\d{7}$	0000590	c.dudek@tu-braunschweig.de	https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:$1			BTO	False	BTO		BTO	BTO	BTO					bto	bto	bto	bto	BTO		bto		P5501			
-bugbase.expt	BugBase Expt	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.	^\d+$	288		http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=$1&action=view				False			BUGBASE.EXPT							bugbase.expt	bugbase.expt										
-bugbase.protocol	BugBase Protocol	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.	^\d+$	67		http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=$1&amp;action=view				False			BUGBASE.PROTOCOL							bugbase.protocol	bugbase.protocol										
-bykdb	Bacterial Tyrosine Kinase Database	https://bykdb.ibcp.fr/BYKdb/	The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases,  providing structural and functional information.	^[A-Z0-9]+$	A0A009E7X8		https://bykdb.ibcp.fr/data/html/annotated/$1.html				False			BYKDB							bykdb	bykdb					bykdb				uniprot	
-c4o	Citation Counting and Context Characterisation Ontology	http://www.sparontologies.net/ontologies/c4o	An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.		InTextReferencePointer		http://purl.org/spar/c4o/$1				False																					
-cabri	Common Access to Biological Resources and Information Project	http://www.cabri.org/	CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it.	^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$	dsmz_mutz-id:ACC 291		http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]				False			CABRI						2380	cabri	cabri										
-cadsr	Cancer Data Standards Registry and Repository	https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki	The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR.	^[0-9]*$	3771992		https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]				False										cadsr	cadsr										
-caloha	CALIPHO Group Ontology of Human Anatomy	https://github.com/calipho-sib/controlled-vocabulary	This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.	^TS-\d+$	TS-0001				https://download.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo		False																					
-cameo	Continuous Automated Model Evaluation	https://cameo3d.org	The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on  tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB.	^[0-9\-_]+$	2019-08-03_00000089_1		https://www.cameo3d.org/sp/targets/target/$1				False			CAMEO							cameo	cameo										
-caps	CAPS-DB	http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home	CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.	^\d+$	434		http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1				False			CAPS							caps	caps										
-caro	Common Anatomy Reference Ontology	https://github.com/obophenotype/caro/	None	^\d{7}$	0000000	haendel@ohsu.edu	http://purl.obolibrary.org/obo/CARO_$1				False	CARO		CARO	CARO								caro	caro	CARO							
-cas	CAS Chemical Registry	https://commonchemistry.cas.org/	CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information.	^\d{1,7}\-\d{2}\-\d$	50-00-0		https://commonchemistry.cas.org/detail?ref=$1			CASID|CAS_RN|SECONDARY_CAS_RN|cas_id	False			CAS			000446			1002	cas	cas					cas		P231			
-casspc	Eschmeyer's Catalog of Fishes	https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp		^\d+$	5359		https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1				True																					
-cath	CATH Protein Structural Domain Superfamily	http://www.cathdb.info	CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.	^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$	1.10.8.10		http://www.cathdb.info/cathnode/$1				False			CATH						2700	cath	cath					cath					
-cath.domain	CATH domain	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.	^\w+$	1cukA01		http://www.cathdb.info/domain/$1				False			CATH.DOMAIN						1040	cath.domain	cath.domain										
-cath.superfamily	CATH superfamily	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and  Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.	^\d+(\.\d+(\.\d+(\.\d+)?)?)?$	1.10.10.200		http://www.cathdb.info/cathnode/$1				False			CATH.SUPERFAMILY							cath.superfamily	cath.superfamily								cath		
-cattleqtldb	Animal Genome Cattle QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			CATTLEQTLDB							cattleqtldb	cattleqtldb					cattleqtldb			qtldb		
-cazy	Carbohydrate Active EnZYmes	http://www.cazy.org/	The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.	^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$	GT10		http://www.cazy.org/$1.html				False			CAZY							cazy	cazy					cazy	CAZy				
-cba	Chinese Biological Abstracts	http://www.cba.ac.cn	CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.	^\d+$	375364		https://europepmc.org/article/CBA/$1				False																					
-cbioportal	The cBioPortal for Cancer Genomics	http://www.cbioportal.org	The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.	^[a-z0-9\_]+$	laml_tcga_pub		https://www.cbioportal.org/study/summary?id=$1				False										cbioportal	cbioportal										
-ccdc	CCDC Number	https://www.ccdc.cam.ac.uk/	The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.	^\d{6,7}$	1829126		https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG				False										ccdc											
-ccds	Consensus CDS	http://www.ncbi.nlm.nih.gov/CCDS/	The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.	^CCDS\d+\.\d+$	CCDS13573.1		http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1				False			CCDS							ccds	ccds					ccds	CCDS				
-ccle	Cancer Cell Line Encyclopedia Cells	https://www.cbioportal.org/study/summary?id=ccle_broad_2019	Datasets around different cancer cell lines generated by the Broad Institute and Novartis		BT20_BREAST		https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1			ccle.cell	False					CCLE																
-cco	Cell Cycle Ontology	http://www.semantic-systems-biology.org/apo	The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.	^\w+$	0000003	vladimir.n.mironov@gmail.com	https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:$1	https://www.bio.ntnu.no/ontology/CCO/cco.owl	https://www.bio.ntnu.no/ontology/CCO/cco.obo		False	CCO		CCO	CCO						cco	cco		cco			cco					
-ccrid	National Experimental Cell Resource Sharing Platform	http://www.cellresource.cn	Cell line databases/resources		4201PAT-CCTCC00348		http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1				False					CCRID																
-cdao	Comparative Data Analysis Ontology	https://github.com/evoinfo/cdao	The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis.  This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein.  In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units).  The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities.  The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'.  For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'.  The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree.  CDAO provides the framework for representing OTUs, trees, transformations, and characters.  The representation of characters and transformations may depend on imported ontologies for a specific type of character.	^\d{7}$	0000072	balhoff@renci.org	http://purl.obolibrary.org/obo/CDAO_$1				False	CDAO	CDAO	CDAO	CDAO								cdao	cdao	CDAO							
-cdd	Conserved Domain Database at NCBI	https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd	The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.	^(cd)?\d{5}$	cd00400		https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1				False			CDD						2666	cdd	cdd					cdd	CDD				
-cdno	Compositional Dietary Nutrition Ontology	https://cdno.info/	None	^\d{7}$	0000013	l.andres.hernandez.18@student.scu.edu.au	http://purl.obolibrary.org/obo/CDNO_$1				False	CDNO			CDNO								cdno	cdno	CDNO							
-cdpd	Canadian Drug Product Database	http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp	The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).	^\d+$	63250		http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1				False			CDPD							cdpd	cdpd										
-cdt	Current Dental Terminology	https://www.ada.org/publications/CDT	The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.	^\d{7}$	1000001			https://github.com/oral-health-and-disease-ontologies/ohd-ontology/blob/master/src/ontology/older/CDTCodes%20as%20Classes_pruned.owl			False																					
-cell_biolabs	Cell Biolabs cell line products	https://www.cellbiolabs.com	Cell line collections		AKR-270		https://www.cellbiolabs.com/search?keywords=$1				False					Cell_Biolabs																
-cell_model_passport	Sanger Cell Model Passports	https://cellmodelpassports.sanger.ac.uk/	Cell line databases/resources		SIDM01262		https://cellmodelpassports.sanger.ac.uk/passports/$1				False					Cell_Model_Passport																
-cellbank.australia	CellBank Australia	http://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/	CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.		ab-1-ha		https://www.cellbankaustralia.com/$1.html				False					CBA																
-cellimage	Cell Image Library	http://cellimagelibrary.org/	The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.	^\d+$	24801		http://cellimagelibrary.org/images/$1				False			CELLIMAGE							cellimage	cellimage					cellimage					
-cellopub	Cellosaurus Publication	https://web.expasy.org/cellosaurus/	Cellosaurus identifeirs for publications, like Pubmed		CLPUB00496		https://web.expasy.org/cellosaurus/cellopub/$1				False					CelloPub																
-cellosaurus	Cellosaurus	https://web.expasy.org/cellosaurus/	The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.	^[A-Z0-9]{4}$	0440		https://web.expasy.org/cellosaurus/CVCL_$1		https://ftp.expasy.org/databases/cellosaurus/cellosaurus.obo	CVCL	False			CELLOSAURUS		Cellosaurus					cellosaurus	cellosaurus							P3289			
-cellosaurus.resource	Cellosaurus Registry	https://web.expasy.org/cellosaurus/	The set of prefixes used in the Cellosaurus resource		4DN		https://bioregistry.io/metaregistry/cellosaurus/$1				False																					
-cellrepo	Cell Version Control Repository	https://cellrepo.ico2s.org/	The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines	^[0-9]+$	82		https://cellrepo.ico2s.org/repositories/$1				False										cellrepo											
-ceph	Cephalopod Ontology	https://github.com/obophenotype/cephalopod-ontology	An anatomical and developmental ontology for cephalopods	^\d{7}$	0000109	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CEPH_$1		https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo		True	CEPH		CEPH	CEPH								ceph	ceph	CEPH							
-cgd	Candida Genome Database	http://www.candidagenome.org/	The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.	^CAL\d{7}$	CAL0003079		http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1				False			CGD							cgd	cgd					cgd	CGD				
-cghdb	CGH Data Base	http://www.cghtmd.jp/CGHDatabase/index_e.jsp	Cell line databases/resources		300165/p13898_2106T		http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en				False					CGH-DB																
-cgnc	Chicken Gene Nomenclature Consortium	http://birdgenenames.org/cgnc/	Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)	^\d+$	10087		http://birdgenenames.org/cgnc/GeneReport?id=$1			BirdBase|CGNC	False																cgnc					
-cgsc	Coli Genetic Stock Center	http://cgsc.biology.yale.edu/index.php	The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.	^\d+$	74		http://cgsc.biology.yale.edu/Site.php?ID=$1				False			CGSC							cgsc	cgsc					cgsc					
-charprot	CharProt	http://www.jcvi.org/charprotdb	CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.	^CH_\d+$	CH_001923		http://www.jcvi.org/charprotdb/index.cgi/view/$1				False			CHARPROT							charprot	charprot										
-chebi	Chemical Entities of Biological Interest	http://www.ebi.ac.uk/chebi	Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.	^\d+$	24867	amalik@ebi.ac.uk	https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1			CHEBI|CHEBIID|ChEBI	False	CHEBI		CHEBI	CHEBI	ChEBI	000407			1174	chebi	chebi	chebi	chebi	CHEBI		chebi		P683			
-chembl	ChEMBL	https://www.ebi.ac.uk/chembl	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL4303805		https://www.ebi.ac.uk/chembl/entity/$1			ChEMBL|ChEMBL_ID|chembl	False						000412				chembl						chembl	ChEMBL				
-chembl.cell	ChEMBL database of bioactive drug-like small molecules - Cell lines section	https://www.ebi.ac.uk/chembldb	Chemistry resources		CHEMBL3307800		https://www.ebi.ac.uk/chembl/cell_line_report_card/$1			ChEMBL-Cells	False					ChEMBL-Cells														chembl		
-chembl.compound	ChEMBL	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL465070		https://www.ebi.ac.uk/chembl/compound/inspect/$1				False			CHEMBL.COMPOUND						2646	chembl.compound	chembl.compound							P592	chembl		
-chembl.target	ChEMBL target	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL3467		https://www.ebi.ac.uk/chembl/target/inspect/$1			ChEMBL-Targets	False			CHEMBL.TARGET		ChEMBL-Targets					chembl.target	chembl.target								chembl		
-chemdb	ChemDB	http://cdb.ics.uci.edu/	ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.	^\d+$	3966782		http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1				False			CHEMDB							chemdb	chemdb					chemdb					
-chemidplus	ChemIDplus	https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp	ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.	^\d+\-\d+\-\d+$	57-27-2		https://chem.nlm.nih.gov/chemidplus/rn/$1			ChemIDplus	False			CHEMIDPLUS						2658	chemidplus	chemidplus					chemidplus					
-cheminf	Chemical Information Ontology	https://github.com/semanticchemistry/semanticchemistry	Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.	^\d{6}$	000410	egon.willighagen@gmail.com	http://purl.obolibrary.org/obo/CHEMINF_$1	https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl			False	CHEMINF		CHEMINF	CHEMINF								cheminf	cheminf	CHEMINF							
-chemspider	ChemSpider	http://www.chemspider.com/	ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.	^\d+$	56586		http://www.chemspider.com/Chemical-Structure.$1.html			ChemSpiderID|Chemspider	False			CHEMSPIDER			000405			1173	chemspider	chemspider					chemspider		P661			
-chickenqtldb	Animal Genome Chicken QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.	^\d+$	14362		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			CHICKENQTLDB							chickenqtldb	chickenqtldb					chickenqtldb			qtldb		
-chiro	ChEBI Integrated Role Ontology	https://github.com/obophenotype/chiro	CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.			vasilevs@ohsu.edu	http://purl.obolibrary.org/obo/CHIRO_$1				False	CHIRO			CHIRO								chiro	chiro	CHIRO							
-chmo	Chemical Methods Ontology	https://github.com/rsc-ontologies/rsc-cmo	CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).	^\d{7}$	0002902	batchelorc@rsc.org	http://purl.obolibrary.org/obo/CHMO_$1				False	CHMO		CHMO	CHMO								chmo	chmo	CHMO							
-cido	Coronavirus Infectious Disease Ontology	https://github.com/cido-ontology/cido	The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.	^\d{7}$	0000005	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/CIDO_$1				False	CIDO			CIDO								cido	cido	CIDO							
-cio	Confidence Information Ontology	https://github.com/BgeeDB/confidence-information-ontology	An ontology to capture confidence information about annotations.	^\d{7}$	0000040	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/CIO_$1				False	CIO		CIO	CIO								cio	cio	CIO							
-citexplore	CiteXplore	https://www.ebi.ac.uk/citexplore/	One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes.		C6155		https://europepmc.org/article/CTX/$1			CTX	False																citexplore					
-cito	Citation Typing Ontology	http://www.sparontologies.net/ontologies/cito	An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.		sharesAuthorInstitutionWith		http://purl.org/spar/cito/$1				False																					
-civic.aid	CIViC Assertion	https://civicdb.org/	A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.	^[0-9]+$	3		https://civicdb.org/links/assertions/$1				False										civic.aid											
-civic.eid	CIViC Evidence	https://civicdb.org/	Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).	^[0-9]+$	1199		https://civicdb.org/links/evidence/$1				False										civic.eid											
-cl	Cell Ontology	https://obophenotype.github.io/cell-ontology/	The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.	^\d{7}$	0000062	addiehl@buffalo.edu	https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:$1		https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo		False	CL	CL	CL	CL	CL					cl	cl	cl	cl	CL		cl		P7963			
-clao	Collembola Anatomy Ontology	https://github.com/luis-gonzalez-m/Collembola	CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).	^\d{7}$	0000088	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/CLAO_$1				False	CLAO			CLAO								clao	clao	CLAO							
-classyfire	ClassyFire	http://classyfire.wishartlab.com/	ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.	^\d{7}$	0004828		http://classyfire.wishartlab.com/tax_nodes/C$1		http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip	CHEMONTID	False										classyfire											
-cldb	Cell Line Database	http://bioinformatics.hsanmartino.it/hypercldb/indexes.html	The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.	^(cl|tum)\d+$	cl3603		http://bioinformatics.hsanmartino.it/hypercldb/$1.html				False			CLDB		CLDB					cldb	cldb										
-clingene	ClinGen Allele Registry	https://reg.clinicalgenome.org	The allele registry provides and maintains identifiers for genetic variants		CA981206459		https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1				False																					
-clinicaltrials	ClinicalTrials.gov	https://clinicaltrials.gov/	ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries	^NCT\d{8}$	NCT00222573		https://clinicaltrials.gov/ct2/show/$1				False			CLINICALTRIALS							clinicaltrials	clinicaltrials					clinicaltrials					
-clinvar	ClinVar Variation	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.	^\d+$	12345		https://www.ncbi.nlm.nih.gov/clinvar/variation/$1				False			ClinVar		ClinVar					clinvar	clinvar							P1929			
-clinvar.record	ClinVar Record	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.	^RCV\d+(\.\d+)?$	RCV000033555.3		http://www.ncbi.nlm.nih.gov/clinvar/$1				False			CLINVAR.RECORD							clinvar.record	clinvar.record										
-clinvar.submission	ClinVar Submission	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.	^SCV\d+(\.\d+)?$	SCV000151292		http://www.ncbi.nlm.nih.gov/clinvar?term=$1				False			CLINVAR.SUBMISSION							clinvar.submission	clinvar.submission										
-clinvar.submitter	ClinVar Submitter	https://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).	^\d+$	26957		https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1				False										clinvar.submitter											
-clo	Cell Line Ontology	http://www.clo-ontology.org	The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.	^\d{7}$	0000091	siiraa@umich.edu	http://purl.obolibrary.org/obo/CLO_$1			CLO	False	CLO		CLO	CLO	CLO							clo	clo	CLO		clo		P2158			
-cls	Cell Lines Service	https://cls.shop/	Cell line collections		300108/p3934_A-172		https://cls.shop/$1				False					CLS																
-clyh	Clytia hemisphaerica Development and Anatomy Ontology	https://github.com/EBISPOT/clyh_ontology	Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica.	^\d+$	1000100	lucas.leclere@obs-vlfr.fr	http://purl.obolibrary.org/obo/CLYH_$1				False	CLYH			CLYH								clyh	clyh	CLYH							
-cmecs	Costal and Marine Ecological Classification Standard	https://cmecscatalog.org/cmecs	Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.	^\d+$	595		https://cmecscatalog.org/cmecs/classification/unit/$1.html				False																					
-cmf	CranioMaxilloFacial ontology	https://code.google.com/p/craniomaxillofacial-ontology/	This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain			engelsta@ohsu.edu	http://purl.obolibrary.org/obo/CMF_$1				True	CMF		CMF									cmf		CMF							
-cmo	Clinical measurement ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	Morphological and physiological measurement records generated from clinical and model organism research and health programs.	^\d{7}$	0001350	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/CMO_$1				False	CMO		CMO	CMO								cmo	cmo	CMO							
-cmpo	Cellular Microscopy Phenotype Ontology	http://www.ebi.ac.uk/cmpo	CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.	^\d{7}$	0000435	jupp@ebi.ac.uk					False	CMPO			CMPO									cmpo								
-co_320	Rice ontology	https://cropontology.org/ontology/CO_320/Rice	Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables	^\d{7}$	0000618	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_320:$1				False		CO_320					CO_320						co_320								
-co_321	Wheat ontology	https://cropontology.org/ontology/CO_321/Wheat	July 2018	^\d{7}$	0000449	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_321:$1				False		CO_321					CO_321						co_321								
-co_322	Maize ontology	https://cropontology.org/ontology/CO_322/Maize	Maize Trait Dictionary in template 5 - CIMMYT- September 2016	^\d{7}$	0000773	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_322:$1				False		CO_322					CO_322						co_322								
-co_323	Barley ontology	https://cropontology.org/ontology/CO_323/Barley	ICARDA - TDv5 - Sept 2018	^\d{7}$	0000252	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_323:$1				False		CO_323					CO_323						co_323								
-co_324	Sorghum ontology	https://cropontology.org/ontology/CO_324/Sorghum	Sorghum TDv5 - Oct 2019	^\d{7}$	0000111	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_324:$1				False		CO_324					CO_324						co_324								
-co_325	Banana ontology	https://cropontology.org/ontology/CO_325/Banana	Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019	^\d{7}$	0000519	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_325:$1				False		CO_325					CO_325						co_325								
-co_326	Coconut ontology	https://cropontology.org/ontology/CO_326/Coconut	Draft version	^\d{7}$	0000254	helpdesk@cropontology-curationtool.org					False							CO_326						co_326								
-co_327	Pearl millet ontology	http://www.cropontology.org/ontology/CO_327/Pearl%20millet	Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016	^\d{7}$	0000095	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_327:$1				False		CO_327					CO_327						co_327								
-co_330	Potato ontology	https://cropontology.org/ontology/CO_330/Potato	CIP - potato ontology - december 2018	^\d{7}$	0000106	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_330:$1				False		CO_330					CO_330						co_330								
-co_331	Sweet Potato ontology	http://www.cropontology.org/ontology/CO_331/Sweet%20Potato	Sweet Potato Trait Dictionary in template v5 - CIP - November 2019	^\d{7}$	0000088	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_331:$1				False		CO_331					CO_331						co_331								
-co_333	Beet Ontology ontology	http://www.cropontology.org/ontology/CO_333/Beet%20Ontology	This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.	^\d+$	3000045	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_333:$1				False		CO_333					CO_333						co_333								
-co_334	Cassava ontology	https://cropontology.org/ontology/CO_334/Cassava	Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016	^\d{7}$	0000070	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_334:$1				False		CO_334					CO_334						co_334								
-co_335	Common Bean ontology	http://www.cropontology.org/ontology/CO_335/Common%20Bean	CIAT Common bean trait dictionary - version August 2014	^\d{7}$	0000189	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_335:$1				False		CO_335					CO_335						co_335								
-co_336	Soybean ontology	https://cropontology.org/ontology/CO_336/Soybean	Soybean Trait Dictionary in template v5 - IITA - July 2015	^\d{7}$	0000339	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_336:$1				False		CO_336					CO_336						co_336								
-co_337	Groundnut ontology	https://cropontology.org/ontology/CO_337/Groundnut	Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015	^\d{7}$	0000054	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_337:$1				False		CO_337					CO_337						co_337								
-co_338	Chickpea ontology	https://cropontology.org/ontology/CO_338/Chickpea	Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000138	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_338:$1				False		CO_338					CO_338						co_338								
-co_339	Lentil ontology	https://cropontology.org/ontology/CO_339/Lentil	Lentil Trait Dictionary in template v5 - ICARDA - July 2015	^\d{7}$	0000032	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_339:$1				False		CO_339					CO_339						co_339								
-co_340	Cowpea ontology	https://cropontology.org/ontology/CO_340/Cowpea	Cowpea Trait Dictionary in template v5 - IITA - August 2015	^\d{7}$	0000639	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_340:$1				False		CO_340					CO_340						co_340								
-co_341	Pigeonpea ontology	https://cropontology.org/ontology/CO_341/Pigeonpea	Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000140	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_341:$1				False		CO_341					CO_341						co_341								
-co_343	Yam ontology	https://cropontology.org/ontology/CO_343/Yam	version 2019 - pvs	^\d{7}$	0100010	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_343:$1				False		CO_343					CO_343						co_343								
-co_345	Brachiaria ontology	https://cropontology.org/ontology/CO_345/Brachiaria	Brachiaria (forages) ontology TD v5 - Version Oct 2016	^\d{7}$	0000127	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_345:$1				False		CO_345					CO_345						co_345								
-co_346	Mungbean ontology	https://cropontology.org/ontology/CO_346/Mungbean	oct 2016	^\d{7}$	0000199	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_346:$1				False		CO_346					CO_346						co_346								
-co_347	Castor bean ontology	http://www.cropontology.org/ontology/CO_347/Castor%20bean	March 2017 version 	^\d{7}$	0000108	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_347:$1				False		CO_347					CO_347						co_347								
-co_348	Brassica ontology	https://cropontology.org/ontology/CO_348/Brassica	Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).	^\d+$	1100107	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_348:$1				False		CO_348					CO_348						co_348								
-co_350	Oat ontology	https://cropontology.org/ontology/CO_350/Oat	Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo	^\d{7}$	0000215	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_350:$1				False		CO_350					CO_350						co_350								
-co_356	Vitis ontology	https://cropontology.org/ontology/CO_356/Vitis	Grape Ontology including OIV and bioversity descriptors. INRA July 2017	^\d+$	4000027	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_356:$1				False		CO_356					CO_356						co_356								
-co_357	Woody Plant Ontology ontology	http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology	This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.	^\d+$	1000290	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_357:$1				False		CO_357					CO_357						co_357								
-co_358	Cotton ontology	https://cropontology.org/ontology/CO_358/Cotton	Cotton ontology from CottonGen database - June 2019	^\d{7}$	0000139	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_358:$1				False		CO_358					CO_358						co_358								
-co_359	Sunflower ontology	https://cropontology.org/ontology/CO_359/Sunflower	December 2019	^\d{7}$	0000947	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_359:$1				False		CO_359					CO_359						co_359								
-co_360	Sugar Kelp trait ontology	http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait	Sugar Kelp trait ontology	^\d{7}$	0000071	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_360:$1				False		CO_360					CO_360						co_360								
-co_365	Fababean ontology	https://cropontology.org/ontology/CO_365/Fababean	developed by ICARDA - Dec 2018	^\d{7}$	0000205	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_365:$1				False		CO_365					CO_365						co_365								
-co_366	Bambara groundnut ontology	http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut	version Dec 2019	^\d{7}$	0000072	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_366:$1				False		CO_366					CO_366						co_366								
-cob	Core Ontology for Biology and Biomedicine	https://github.com/OBOFoundry/COB	COB brings together key terms from a wide range of OBO projects to improve interoperability.	^\d{7}$	0000080	bpeters@lji.org	http://purl.obolibrary.org/obo/COB_$1				False	COB			COB								cob	cob	COB							
-coconut	COlleCtion of Open Natural ProdUcTs	https://coconut.naturalproducts.net	"COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a ""flat"" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."	^CNP\d{7}$	CNP0171505		https://coconut.naturalproducts.net/compound/coconut_id/$1				False																					
-codelink	GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray	https://www.ebi.ac.uk/arrayexpress/files/A-GEHB-1/A-GEHB-1.adf.txt	GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release).	^GE\d+$	GE86325						False																					
-cog	Cluster of orthologous genes	https://www.ncbi.nlm.nih.gov/research/cog/	COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.	^COG\d+$	COG0001	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cog/$1			COG_Cluster	False																cog					
-cog.category	COG Categories	https://www.ncbi.nlm.nih.gov/research/cog/	Higher-level classifications of COG Pathways		K	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1				False																			cog		
-cog.pathway	COG Pathways	https://www.ncbi.nlm.nih.gov/research/cog/pathways	Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera.		NAD%20biosynthesis	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1				False																			cog		
-cohd	MIMIC III Database	https://github.com/MIT-LCP/mimic-omop	MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012								False																					
-col.taiwan	Catalogue of Life in Taiwan	http://taibnet.sinica.edu.tw/home.php	Identifier (name code) for a taxon in the catalogue of life in taiwan	^[1-9]\d{5}$	431472		https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1				False																		P3088			
-colao	Coleoptera Anatomy Ontology	https://github.com/insect-morphology/colao	The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.	^\d{7}$	0000000	entiminae@gmail.com	http://purl.obolibrary.org/obo/COLAO_$1				False	COLAO			COLAO								colao	colao	COLAO							
-colonatlas	Colorectal Cancer Atlas	http://www.coloncanceratlas.org	Cell line databases/resources		ALA		http://www.coloncanceratlas.org/search_cell_line?cell_line=$1				False					ColonAtlas																
-combine.specifications	COMBINE specifications	https://co.mbine.org/standards/	The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.	^\w+(\-|\.|\w)*$	sbgn.er.level-1.version-1.2		https://co.mbine.org/specifications/$1				False			COMBINE.SPECIFICATIONS							combine.specifications	combine.specifications										
-come	The Bioinorganic Motif Database	https://www.flymine.org/come	COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.		MOL000160		https://www.flymine.org/come/entry?gn=$1				False																come					
-complexportal	Complex Portal	https://www.ebi.ac.uk/complexportal	A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.	^CPX-[0-9]+$	CPX-263		https://www.ebi.ac.uk/complexportal/complex/$1			ComplexPortal	False			COMPLEXPORTAL							complexportal	complexportal						ComplexPortal	P7718			
-comptox	CompTox Chemistry Dashboard	https://comptox.epa.gov/dashboard	The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.	^DTXSID\d+$	DTXSID2021028		https://comptox.epa.gov/dashboard/$1				False			COMPTOX							comptox	comptox							P3117			
-compulyeast	Compluyeast-2D-DB	http://compluyeast2dpage.dacya.ucm.es/	Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	O08709		http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1				False			COMPULYEAST							compulyeast	compulyeast									uniprot	
-conoserver	ConoServer	http://www.conoserver.org/	ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.	^\d+$	2639		http://www.conoserver.org/?page=card&table=protein&id=$1				False			CONOSERVER							conoserver	conoserver						ConoServer				
-conso	Curation of Neurodegeneration Supporting Ontology	https://pharmacome.github.io/conso/	An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.	^CONSO\d{5}$	CONSO00010		https://pharmacome.github.io/conso/$1				False																					
-cordis.article	CORDIS Article	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	436605		https://cordis.europa.eu/article/id/$1				False																					
-cordis.project	CORDIS Project	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	817732		https://cordis.europa.eu/project/id/$1				False																					
-coriell	Coriell Institute for Medical Research	http://ccr.coriell.org/	The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.	^[A-Z]{2}\d+$	GM17027		http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1				False			Coriell		Coriell					coriell	coriell										
-corrdb	CorrDB	https://www.animalgenome.org	A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.	^[0-9]+$	37232		https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1				False										corrdb											
-corum	Comprehensive Resource of Mammalian protein complexes	https://mips.helmholtz-muenchen.de/genre/proj/corum/	The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.	^\d+$	100		https://mips.helmholtz-muenchen.de/corum/?id=$1				False			CORUM							corum	corum					corum	CORUM				
-cosmic	COSMIC Gene	http://cancer.sanger.ac.uk/cosmic/	COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.	^[A-Z0-9]+$	BRAF		http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1				False			COSMIC		Cosmic				3264	cosmic	cosmic										
-cosmic.cell	COSMIC Cell Lines	https://cancer.sanger.ac.uk/cell_lines/	COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer	^\d+$	906801		https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1				False					Cosmic-CLP																
-covid19	COVID-19 Surveillance Ontology	https://covid19.sfb.uit.no	Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.	^\w+_COVID19_[-\w]+$	SFB_COVID19_MW286762		https://covid19.sfb.uit.no/api/records/$1				False	COVID19			COVID19						covid19											
-covoc	CoVoc Coronavirus Vocabulary	https://github.com/EBISPOT/covoc	The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.	^\d{7}$	0010034	zmp@ebi.ac.uk					False													covoc								
-cp	Cellular Phenotypes										True																					
-cpc	Cooperative Patent Classification	https://worldwide.espacenet.com/classification	The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.	^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$	A01M1/026		https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1				False			CPC							cpc	cpc										
-cpga	Cereal Plant Gross Anatomy	http://www.gramene.org/plant_ontology/	A structured controlled vocabulary for the anatomy of Graminae. Please note that this ontology has now been superseded by the Plant Ontology.			po-discuss@plantontology.org					True			gro.cpga	GRO-CPGA								gro									
-cpt	Current Procedural Terminology	https://www.aapc.com	Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]	^\d+$	00103		https://www.aapc.com/codes/cpt-codes/$1				False	CPT			CPT																	
-credit	CASRAI Contributor Roles Taxonomy	https://casrai.org/credit/	CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.		Software						False																					
-crisprdb	CRISPRdb	http://crispr.i2bc.paris-saclay.fr/	"Repeated CRISPR (""clustered regularly interspaced short palindromic repeats"") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."	^[0-9]+$	551115		http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1				False			CRISPRDB							crisprdb	crisprdb										
-cro	Contributor Role Ontology	https://github.com/data2health/contributor-role-ontology	A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.	^\d{7}$	0000038	whimar@ohsu.edu	http://purl.obolibrary.org/obo/CRO_$1		https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo		False	CRO		CRO	CRO								cro	cro	CRO							
-cryoem	Cryo Electron Microscopy ontology	http://scipion.i2pc.es/ontology/cryoem	Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles	^\d{7}$	0000052	isanchez@cnb.csic.es					False	CRYOEM			CRYOEM									cryoem								
-cryptodb	CryptoDB	https://cryptodb.org/cryptodb/	CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	cgd7_230		https://cryptodb.org/cryptodb/app/record/gene/$1				False			CRYPTODB							cryptodb	cryptodb					cryptodb					
-csa	Catalytic Site Atlas	https://www.ebi.ac.uk/thornton-srv/databases/CSA/	The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.	^[0-9][A-Za-z0-9]{3}$	1a05		https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1				False			CSA							csa	csa					csa					
-csd	Cambridge Structural Database	https://www.ccdc.cam.ac.uk/	The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.	^[A-Z]{6}(\d{2})?$	PELNAW		https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG				False										csd											
-csp	Computer Retrieval of Information on Science Projects Thesaurus	https://web.archive.org/web/20091223034048/http://crisp.cit.nih.gov/Thesaurus/index.htm			2004-2820					CRISP|CRISP Thesaurus|CRISP Thesaurus, 2006|CSP2005	True	CRISP			CRISP																	
-cst	Cancer Staging Terms	http://www.cellsignal.com/pathways/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.	^[A-Za-z0-9_-]+$	Akt_PKB		http://www.cellsignal.com/reference/pathway/$1.html				False	CST		CST	CST						cst	cst					cst					
-cst.ab	Cell Signaling Technology Antibody	http://www.cellsignal.com/catalog/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.	^\d+$	3305		http://www.cellsignal.com/products/$1.html				False			CST.AB							cst.ab	cst.ab										
-ctd.chemical	CTD Chemical	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^[CD]\d+$	D001151		http://ctdbase.org/detail.go?type=chem&acc=$1				False			CTD.CHEMICAL							ctd.chemical	ctd.chemical								ctd	mesh	
-ctd.disease	CTD Disease	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^D\d+$	D053716		http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1				False			CTD.DISEASE							ctd.disease	ctd.disease								ctd	mesh	
-ctd.gene	CTD Gene	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^\d+$	101		http://ctdbase.org/detail.go?type=gene&acc=$1				False			CTD.GENE							ctd.gene	ctd.gene								ctd	ncbigene	
-cteno	Ctenophore Ontology	https://github.com/obophenotype/ctenophore-ontology	An anatomical and developmental ontology for ctenophores (Comb Jellies)	^\d{7}$	0000047	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CTENO_$1		https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo		False	CTENO		CTENO	CTENO								cteno	cteno	CTENO							
-cto	Clinical Trials Ontology	https://github.com/ClinicalTrialOntology/CTO/	The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.	^\d{7}$	0000022	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/CTO_$1				False	CTO			CTO								cto	cto	CTO							
-cubedb	Cube db	http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html	Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.	^[A-Za-z_0-9]+$	AKR		http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/				True			CUBEDB							cubedb	cubedb										
-cvdo	Cardiovascular Disease Ontology	https://github.com/OpenLHS/CVDO	An ontology to describe entities related to cardiovascular diseases	^\d{7}$	0000546	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/CVDO_$1				False	CVDO		CVDO	CVDO								cvdo	cvdo	CVDO							
-d1id	DataONE	https://www.dataone.org	DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences.	^\S+$	00030692-0FE1-4A1B-955E-A2E55D659267		https://cn.dataone.org/cn/v2/resolve/{$1}				False			D1ID							d1id	d1id										
-dailymed	DailyMed	https://dailymed.nlm.nih.gov/dailymed/	DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.	^[A-Za-z0-9-]+$	973a9333-fec7-46dd-8eb5-25738f06ee54		https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1				False			DAILYMED							dailymed	dailymed					dailymed					
+- [Xenbase](https://www.xenbase.org)"	^[1-9][0-9]{14}$	100000000000001	cjmungall@lbl.gov	https://www.alliancegenome.org/accession/$1				False																						
+agro	Agronomy Ontology	https://github.com/AgriculturalSemantics/agro	AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities	^\d{8}$	00020007	m.a.laporte@cgiar.org	http://purl.obolibrary.org/obo/AGRO_$1		https://raw.githubusercontent.com/KrishnaTO/agro/master/agro.obo		False	AGRO	AGRO	AGRO	AGRO								agro	agro	AGRO								
+agrovoc	Agronomy Vocabulary	https://data.apps.fao.org/catalog/organization/agrovoc	AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages.	^[a-z0-9]+$	2842		http://aims.fao.org/aos/agrovoc/c_$1				False		AGROVOC						AGROVOC														
+aism	Ontology for the Anatomy of the Insect SkeletoMuscular system	https://github.com/insect-morphology/aism	The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.	^\d{7}$	0000027	entiminae@gmail.com	http://purl.obolibrary.org/obo/AISM_$1				False	AISM			AISM								aism	aism	AISM								
+allergome	Allergome	http://www.allergome.org/	Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.	^\d+$	1948		http://www.allergome.org/script/dettaglio.php?id_molecule=$1				False			ALLERGOME							allergome	allergome					allergome		Allergome				
+alzforum.mutation	Alzforum Mutations	https://www.alzforum.org/mutations	Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.		app-d678n-tottori		https://www.alzforum.org/mutations/$1			Alzforum_mut	False																						
+amoebadb	AmoebaDB	http://amoebadb.org/amoeba/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^EDI_\d+$	EDI_244000		https://amoebadb.org/amoeba/app/record/gene/$1				False			AMOEBADB							amoebadb	amoebadb					amoebadb	r3d100012457					
+amphx	The Amphioxus Development and Anatomy Ontology	https://github.com/EBISPOT/amphx_ontology	An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).	^\d+$	1000160	hescriva@obs-banyuls.fr	http://purl.obolibrary.org/obo/AMPHX_$1				False	AMPHX			AMPHX								amphx	amphx	AMPHX								
+antibodyregistry	Antibody Registry	http://antibodyregistry.org/	The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.	^\d{6}$	493771		http://antibodyregistry.org/AB_$1				False			ANTIBODYREGISTRY							antibodyregistry	antibodyregistry											
+antweb	AntWeb ID	http://www.antweb.org/	AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.	^casent\d+(\-D\d+)?$	casent0106247		http://www.antweb.org/specimen.do?name=$1				False			ANTWEB							antweb	antweb					antweb			P5299			
+aop	AOPWiki	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	98		https://aopwiki.org/aops/$1				False			AOP							aop	aop											
+aop.events	AOPWiki (Key Event)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	3		https://aopwiki.org/events/$1				False			AOP.EVENTS							aop.events	aop.events											
+aop.relationships	AOPWiki (Key Event Relationship)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	5		https://aopwiki.org/relationships/$1				False			AOP.RELATIONSHIPS							aop.relationships	aop.relationships											
+aop.stressor	AOPWiki (Stressor)	https://aopwiki.org/	International repository of Adverse Outcome Pathways.	^\d+$	9		https://aopwiki.org/stressors/$1				False			AOP.STRESSOR							aop.stressor	aop.stressor											
+apaonto	Psychology Ontology	https://bioportal.bioontology.org/ontologies/APAONTO	Ontology from the APA		Abdomen		http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1				False	APAONTO			APAONTO																		
+apd	Antimicrobial Peptide Database	http://aps.unmc.edu/AP/	The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.	^\d{5}$	01001		http://aps.unmc.edu/AP/database/query_output.php?ID=$1				False			APD							apd	apd					apd						
+aphidbase.transcript	AphidBase Transcript	http://www.aphidbase.com/aphidbase	AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.	^ACYPI\d{6}(-RA)?$	ACYPI000159		http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1				False			APHIDBASE.TRANSCRIPT							aphidbase.transcript	aphidbase.transcript											
+apid.interactions	APID Interactomes	http://cicblade.dep.usal.es:8080/APID/	APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous  organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on  quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	P01116		http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1				False			APID.INTERACTIONS							apid.interactions	apid.interactions										uniprot	
+apo	Ascomycete phenotype ontology	http://www.yeastgenome.org/	A structured controlled vocabulary for the phenotypes of Ascomycete fungi.	^\d{7}$	0000184	stacia@stanford.edu	https://www.yeastgenome.org/observable/APO:$1				False	APO		YPO	APO								apo	apo	APO								
+apollosv	Apollo Structured Vocabulary	https://github.com/ApolloDev/apollo-sv	Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models	^\d{8}$	00000443	hoganwr@ufl.edu	http://purl.obolibrary.org/obo/APOLLO_SV_$1				False	APOLLO_SV			APOLLO-SV								apollo_sv	apollo_sv	APOLLO_SV								
+arachnoserver	ArachnoServer	http://www.arachnoserver.org/	ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.	^AS\d{6}$	AS000060		http://www.arachnoserver.org/toxincard.html?id=$1				False			ARACHNOSERVER						2578	arachnoserver	arachnoserver					arachnoserver	r3d100012902	ArachnoServer				
+araport	Arabidopsis Information Portal	https://www.araport.org/	Website with general information about Arabidopsis and functionalities such as a genomic viewer		AT1G01010		https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1				False																		Araport				
+ardb	Antibiotic Resistance Genes Database	http://ardb.cbcb.umd.edu/	The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.	^[A-Z_]{3}[0-9]{4,}$	CAE46076		http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term=$1				False			ARDB							ardb	ardb											
+ark	Archival Resource Key	http://n2t.net/	An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type.	^/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$	/12345/fk1234		http://n2t.net/ark:$1				False			ARK							ark	ark											
+aro	Antibiotic Resistance Ontology	https://github.com/arpcard/aro	Antibiotic resistance genes and mutations	^\d{7}$	1000001	mcarthua@mcmaster.ca	http://purl.obolibrary.org/obo/ARO_$1				False	ARO		ARO	ARO								aro	aro	ARO								
+arrayexpress	ArrayExpress	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.	^[AEP]-\w{4}-\d+$	E-MEXP-1712		https://www.ebi.ac.uk/arrayexpress/experiments/$1				False			ARRAYEXPRESS		ArrayExpress					arrayexpress	arrayexpress					arrayexpress	r3d100010222					
+arrayexpress.platform	ArrayExpress Platform	https://www.ebi.ac.uk/arrayexpress/	ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.	^[AEP]-\w{4}-\d+$	A-GEOD-50		https://www.ebi.ac.uk/arrayexpress/arrays/$1				False			ARRAYEXPRESS.PLATFORM							arrayexpress.platform	arrayexpress.platform											
+arraymap	ArrayMap	https://www.arraymap.org	arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.	^[\w\-:,]{3,64}$	icdom:8500_3		https://www.arraymap.org/pgx:$1				False			ARRAYMAP							arraymap	arraymap						r3d100012630					
+arxiv	arXiv	https://arxiv.org/	arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.	^(\w+(\-\w+)?(\.\w+)?)?\d{4,7}(\.\d+(v\d+)?)?$	0807.4956v1		https://arxiv.org/abs/$1				False			ARXIV							arxiv	arxiv					arxiv						
+asap	A Systematic Annotation Package for Community Analysis of Genomes	http://asap.ahabs.wisc.edu/asap/home.php	ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.	^[A-Za-z0-9-]+$	ABE-0009634		http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1				False			ASAP							asap	asap					asap	r3d100010666					
+ascl	Astrophysics Source Code Library	http://ascl.net/	The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).	^[0-9\.]+$	1801.012		http://ascl.net/$1				False			ASCL							ascl	ascl											
+asin	Amazon Standard Identification Number	https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182	Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.	^[0-9]{10}$	0471491039		https://amzn.com/$1				False			ASIN							asin	asin											
+aspgd.locus	Aspergillus Genome Database	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1				False			ASPGD.LOCUS							aspgd.locus	aspgd.locus											
+aspgd.protein	AspGD Protein	http://www.aspgd.org/	The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.	^[A-Za-z_0-9]+$	ASPL0000349247		http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1				False			ASPGD.PROTEIN							aspgd.protein	aspgd.protein											
+asrp	Arabidopsis Small RNA Project	https://asrp.danforthcenter.org/	Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes.		ASRP1423		http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1				False																asrp						
+atc	Anatomical Therapeutic Chemical Classification System	http://www.whocc.no/atc_ddd_index/	The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels;  Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level).  The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.	^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$	A10BA02		http://www.whocc.no/atc_ddd_index/?code=$1			ATC_code|ATTC	False	ATC		ATC	ATC					3103	atc	atc					atc			P267			
+atcc	American Type Culture Collection	https://www.lgcstandards-atcc.org	The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.	^([A-Z]+-)?\d+$	11303		https://www.atcc.org/products/$1			ATCC|ATCC number|ATCC(dna)|ATCC(in host)	False			ATCC		ATCC					atcc	atcc											
+atcvet	Anatomical Therapeutic Chemical Vetinary	http://www.whocc.no/atcvet/atcvet_index/	The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.	^Q[A-Z0-9]+$	QJ51RV02		http://www.whocc.no/atcvet/atcvet_index/?code=$1				False			ATCVET							atcvet	atcvet											
+atfdb.family	Animal TFDB Family	http://www.bioguo.org/AnimalTFDB/family_index.php	The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.	^\w+$	CUT		http://www.bioguo.org/AnimalTFDB/family.php?fam=$1				False			ATFDB.FAMILY							atfdb.family	atfdb.family											
+ato	Amphibian taxonomy	http://www.amphibanat.org	Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource	^\d{7}$	0000000	david.c.blackburn@gmail.com	http://purl.obolibrary.org/obo/ATO_$1				True	ATO		ATO	ATO								ato										
+atol	Animal Trait Ontology for Livestock	http://www.atol-ontology.com	ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.	^\d{7}$	0002233	pylebail@rennes.inra.fr		https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl			False	ATOL	ATOL		ATOL									atol									
+autdb	AutDB	http://autism.mindspec.org/autdb/	AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.	^[A-Z]+[A-Z-0-9]{2,}$	ADA		http://autism.mindspec.org/GeneDetail/$1				False			AUTDB							autdb	autdb											
+bacdive	Bacterial Diversity Metadatabase	https://bacdive.dsmz.de/	BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.	^[0-9]+$	131392		https://bacdive.dsmz.de/strain/$1				False										bacdive	bacdive						r3d100013060					
+bacmap.biog	BacMap Biography	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.	^\d+$	1050		http://bacmap.wishartlab.com/organisms/$1				False			BACMAP.BIOG							bacmap.biog	bacmap.biog											
+bacmap.map	BacMap Map	http://bacmap.wishartlab.com/	BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.	^\w+(\_)?\d+(\.\d+)?$	AP011135		http://bacmap.wishartlab.com/maps/$1/index.html				False			BACMAP.MAP							bacmap.map	bacmap.map											
+bactibase	Bactibase	http://bactibase.hammamilab.org	Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.		BAC045		http://bactibase.hammamilab.org/$1				False																bactibase	r3d100012755					
+bams	Brain Architecture Knowledge Management System Neuroanatomical Ontology	https://bams1.org	BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.								True																						
+bao	BioAssay Ontology	http://bioassayontology.org	The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.	^\d{7}$	0002989		http://bioportal.bioontology.org/ontologies/BAO/bao:BAO_$1			BAO	False	BAO		BAO	BAO						bao	bao		bao	BAO								
+bbkg	Blue Brain Project Knowledge Graph	https://portal.bluebrain.epfl.ch	Blue Brain Project's published data as knowledge graphs and Web Studios.	^[-\w]+(?:\/[-\w]+)(?:\/\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b)$	topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/$1				False										bbkg												
+bbtp	Blue Brain Project Topological sampling Knowledge Graph	https://portal.bluebrain.epfl.ch	"Input data and analysis results for the paper ""Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a		https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1				False										bbtp												
+bcgo	Beta Cell Genomics Ontology	https://github.com/obi-bcgo/bcgo	An application ontology built for beta cell genomics studies.	^\d{7}$	0000015	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/BCGO_$1	https://github.com/obi-bcgo/bcgo/raw/master/ontology/bcgo.owl			True	BCGO		BCGO	BCGO	BCGO							bcgo		BCGO								
+bcio	The Behaviour Change Intervention Ontology	https://www.humanbehaviourchange.org/	The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.	^\d{6}$	040000			http://humanbehaviourchange.org/ontology/bcio.owl			False	BCI-O			BCI-O									bcio									
+bco	Biological Collections Ontology	https://github.com/BiodiversityOntologies/bco	An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.	^\d{7}$	0000081	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/BCO_$1				False	BCO	BCO	BCO	BCO				BCO				bco	bco	BCO								
+bcrc	BCRC Strain Collection Catalog	https://catalog.bcrc.firdi.org.tw	Cell line collections	^\d+$	60316		https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1				False					BCRC																	
+bcrj	Banco de Celulas do Rio de Janeiro	http://bcrj.org.br/celula/bcrj	Cell line collections	^\d{4}$	0278		http://bcrj.org.br/celula/$1				False					BCRJ																	
+bdgp.est	Berkeley Drosophila Genome Project EST database	https://www.ncbi.nlm.nih.gov/dbEST/index.html	The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).	^\w+(\.)?(\d+)?$	EY223054.1		https://www.ncbi.nlm.nih.gov/nucest/$1				False			BDGP.EST							bdgp.est	bdgp.est											dbest
+bdgp.insertion	BDGP insertion DB	http://flypush.imgen.bcm.tmc.edu/pscreen/	BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.	^\w+$	KG09531		http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1				False			BDGP.INSERTION							bdgp.insertion	bdgp.insertion											
+bdsc	Bloomington Drosophila Stock Center	https://bdsc.indiana.edu/about/mission.html	The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.	^\d+$	33607		https://bdsc.indiana.edu/stocks/$1				False										bdsc	bdsc											
+beetlebase	Tribolium Genome Database -- Insertion	http://beetlebase.org/	BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.	^TC\d+$	TC010103		http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1				False			BEETLEBASE							beetlebase	beetlebase					beetlebase	r3d100010921					
+begdb	Benchmark Energy & Geometry Database	http://www.begdb.com	The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.	^[0-9]+$	4214		http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1				False			BEGDB							begdb	begdb											
+beiresources	BEI Resources	https://www.beiresources.org	Cell line collections		MRA-253		https://www.beiresources.org/Catalog/cellBanks/$1.aspx			BEI_Resources	False					BEI_Resources																	
+bel	Biological Expression Language	https://biological-expression-language.github.io/	The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents.		9-1-1 Complex						False																						
+bfo	Basic Formal Ontology	http://ifomis.org/bfo/	The upper level ontology upon which OBO Foundry ontologies are built.	^\d{7}$	0000001	phismith@buffalo.edu	http://purl.obolibrary.org/obo/BFO_$1				False	BFO	BFO	BFO	BFO								bfo	bfo	BFO								
+bgee.family	Bgee family	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.	^(ENSFM|ENSGTV:)\d+$	ENSFM00500000270089		http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1				False			BGEE.FAMILY							bgee.family	bgee.family											
+bgee.gene	Bgee gene	https://bgee.org/	Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.	^[A-Za-z]+\d+$	FBgn0000015		https://bgee.org/?page=gene&gene_id=$1				False			BGEE.GENE							bgee.gene	bgee.gene											
+bgee.organ	Bgee organ	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.	^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$	EHDAA:2185		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1				False			BGEE.ORGAN							bgee.organ	bgee.organ											
+bgee.stage	Bgee stage	http://bgee.unil.ch/bgee/bgee	Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.	^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$	HsapDO:0000004		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1				False			BGEE.STAGE							bgee.stage	bgee.stage											
+bido	Bibliometric Data Ontology	http://www.sparontologies.net/ontologies/bido	An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.		CategorialBibliometricData		http://purl.org/spar/bido/$1				False																						
+bigg.compartment	BiGG Compartment	http://bigg.ucsd.edu/compartments/	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.	^[a-z_A-Z]+$	c		http://bigg.ucsd.edu/compartments/$1				False			BIGG.COMPARTMENT							bigg.compartment	bigg.compartment											
+bigg.metabolite	BiGG Metabolite	http://bigg.ucsd.edu/universal/metabolites	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes.	^[a-z_A-Z0-9]+$	12dgr161		http://bigg.ucsd.edu/models/universal/metabolites/$1				False			BIGG.METABOLITE							bigg.metabolite	bigg.metabolite											
+bigg.model	BiGG Model	http://bigg.ucsd.edu/models	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.	^[a-z_A-Z0-9]+$	iECABU_c1320		http://bigg.ucsd.edu/models/$1				False			BIGG.MODEL							bigg.model	bigg.model											
+bigg.reaction	BiGG Reaction	http://bigg.ucsd.edu/universal/reactions	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.	^[a-z_A-Z0-9]+$	13GS		http://bigg.ucsd.edu/models/universal/reactions/$1				False			BIGG.REACTION							bigg.reaction	bigg.reaction											
+bila	Bilateria anatomy	http://4dx.embl.de/4DXpress	This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource.		0000000	henrich@embl.de	http://purl.obolibrary.org/obo/BILA_$1				True			BILA									bila										
+bindingdb	BindingDB	https://www.bindingdb.org	BindingDB is the first public database of protein-small molecule affinity data.	^\w\d+$	e999		http://www.bindingdb.org/compact/$1				False			BINDINGDB							bindingdb	bindingdb					bindingdb	r3d100012074	BindingDB				
+biocarta.pathway	BioCarta Pathway	https://www.biocarta.com/	BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.	^([hm]\_)?\w+Pathway$	h_aktPathway		https://cgap.nci.nih.gov/Pathways/BioCarta/$1				False			BIOCARTA.PATHWAY							biocarta.pathway	biocarta.pathway											
+biocatalogue.service	BioCatalogue Service	https://www.biocatalogue.org/	The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.	^\d+$	614		https://www.biocatalogue.org/services/$1				False			BIOCATALOGUE.SERVICE							biocatalogue.service	biocatalogue.service											
+biocyc	BioCyc collection of metabolic pathway databases	http://biocyc.org	BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.	^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$	ECOLI:CYT-D-UBIOX-CPLX		http://biocyc.org/getid?id=$1				False			BIOCYC						2104	biocyc	biocyc					biocyc		BioCyc				
+biogrid	BioGRID	http://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	31623		http://thebiogrid.org/$1				False			BIOGRID							biogrid	biogrid					biogrid	r3d100010350	BioGRID				
+biogrid.interaction	BioGRID Interactions	https://thebiogrid.org/	BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.	^\d+$	2649230	md.tyers@umontreal.ca	https://thebiogrid.org/interaction/$1				False									2628											biogrid		
+biolegend	BioLegend	https://www.biolegend.com	BioLegend is a life sciences supply vendor.	^\d+$	3403		https://www.biolegend.com/Default.aspx?ID=6664&productid=$1				False																						
+biolink	Biolink Model	https://biolink.github.io/biolink-model/	A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.	^\S+$	Gene		https://w3id.org/biolink/vocab/$1				False	BIOLINK			BIOLINK						biolink												
+biominder	Bio-MINDER Tissue Database	https://datalab.rwth-aachen.de/MINDER	Database of the dielectric properties of biological tissues.	^[a-z0-9\-]+$	aef4c195-9cf9-46db-a12a-7cfd1ff3eec3		https://datalab.rwth-aachen.de/MINDER/resource/$1				False			BIOMINDER							biominder	biominder											
+biomodels.db	BioModels Database	https://www.ebi.ac.uk/biomodels/	BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.	^((BIOMD|MODEL)\d{10})|(BMID\d{12})$	BIOMD0000000048		https://www.ebi.ac.uk/biomodels/$1			BIOMD	False			BIOMODELS.DB							biomodels.db	biomodels.db											
+biomodels.kisao	Kinetic Simulation Algorithm Ontology	https://github.com/SED-ML/KiSAO	The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.	^\d+$	0000057	jonrkarr@gmail.com	https://www.biomodels.net/kisao/KISAO#KISAO_$1			kisao	False	KISAO		KISAO	KISAO						biomodels.kisao	biomodels.kisao	kisao	kisao	KISAO		kisao						
+biomodels.teddy	Terminology for Description of Dynamics	http://teddyontology.sourceforge.net/	The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.	^\d+$	0000066		https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1	http://svn.code.sf.net/p/teddyontology/code/teddy/tags/current/teddy-inferred.owl		teddy	False	TEDDY		BIOMODELS.TEDDY	TEDDY						biomodels.teddy	biomodels.teddy		teddy			teddy						
+biomodels.vocabulary	SBML RDF Vocabulary	http://biomodels.net/rdf/vocabulary.rdf	Vocabulary used in the RDF representation of SBML models.	^[A-Za-z]+$	rateRule		http://biomodels.net/rdf/vocabulary.rdf#$1				False			BIOMODELS.VOCABULARY							biomodels.vocabulary	biomodels.vocabulary											
+bionumbers	BioNumbers	https://bionumbers.hms.harvard.edu	BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.	^\d+$	104674		https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1				False			BIONUMBERS						2660	bionumbers	bionumbers					bionumbers						
+bioportal	BioPortal	http://bioportal.bioontology.org/	BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.	^\d+$	1046		http://bioportal.bioontology.org/ontologies/$1				False			BIOPORTAL							bioportal	bioportal					bioportal	r3d100012344					
+bioproject	BioProject	http://trace.ddbj.nig.ac.jp/bioproject/	BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.	^PRJ[DEN][A-Z]\d+$	PRJDB3		https://www.ncbi.nlm.nih.gov/bioproject/?term=$1				False			BIOPROJECT							bioproject	bioproject						r3d100013330					
+bioregistry	Bioregistry	https://bioregistry.io	The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.		bioregistry	cthoyt@gmail.com	https://bioregistry.io/registry/$1				False																						
+bioregistry.collection	Bioregistry Collections	https://bioregistry.io/collection	Manually curated collections of resources stored in the bioregistry	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/collection/$1				False																						
+bioregistry.registry	Bioregistry Metaregistry	https://bioregistry.io/metaregistry/	The Bioregistry's meta-registry		miriam	cthoyt@gmail.com	https://bioregistry.io/metaregistry/$1				False																						
+bioregistry.schema	Bioregistry Schema	https://bioregistry.io/schema	Schema for the export of the Bioregistry as RDF	^\d{7}$	0000001	cthoyt@gmail.com	https://bioregistry.io/schema/#$1				False																						
+biorxiv	bioRxiv	https://biorxiv.org	The bioRxiv is a preprint server for biology	^(\d{4}\.\d{2}\.\d{2}\.)?\d{6,8}(v\d{1,3})?$	2022.07.08.499378		https://www.biorxiv.org/content/10.1101/$1				False																						
+biosample	BioSample	https://www.ebi.ac.uk/biosamples/	The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.	^SAM[NED](\w)?\d+$	SAMEA2397676		https://www.ebi.ac.uk/biosamples/sample/$1			biosamples	False			BIOSAMPLE		BioSamples					biosample	biosample						r3d100012828					
+biosimulations	biosimulations	https://icahn.mssm.edu/	BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools.	^[a-zA-Z0-9_-]{3,}$	Yeast-cell-cycle-Irons-J-Theor-Biol-2009		https://biosimulations.org/projects/$1				False										biosimulations							r3d100013361					
+biosimulators	BioSimulators	https://biosimulators.org/	BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).	^[a-zA-Z0-9-_]+$	vcell		https://biosimulators.org/simulators/$1				False										biosimulators							r3d100013432					
+biostudies	BioStudies database	https://www.ebi.ac.uk/biostudies/	The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.	^S-[A-Z]{4}[A-Z\d\-]+$	S-EPMC6266652		https://www.ebi.ac.uk/biostudies/studies/$1				False										biostudies	biostudies						r3d100012627					
+biosystems	BioSystems	https://www.ncbi.nlm.nih.gov/biosystems/	The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.	^\d+$	001		https://www.ncbi.nlm.nih.gov/biosystems/$1				False			BIOSYSTEMS							biosystems	biosystems					biosystems						
+biotools	BioTools	https://bio.tools/	BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.	^[-A-Za-z0-9\_]*$	uniprotkb		https://bio.tools/$1				False			BIOTOOLS							biotools	biotools						r3d100013668					
+biozil	BIOZIL	https://www.biozol.de/en	Redistributor of bilogics and biomedical supplies		ls-c35719-120		https://www.biozol.de/en/product/$1				False																						
+birnlex	Biomedical Informatics Research Network Lexicon	https://bioportal.bioontology.org/ontologies/BIRNLEX	The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.	^\d+$	2023		http://uri.neuinfo.org/nif/nifstd/birnlex_$1				False	BIRNLEX			BIRNLEX																		
+biro	Bibliographic Reference Ontology	http://www.sparontologies.net/ontologies/biro	An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.		BibliographicRecord		http://purl.org/spar/biro/$1				False																						
+bitbucket	Bitbucket	https://www.atlassian.com/	Bitbucket is a Git-based source code repository hosting service owned by Atlassian.	^[0-9A-Za-z-_\.]+/[0-9A-Za-z-_\.]+$	andreadega/systems-biology-compiler		https://bitbucket.org/$1				False										bitbucket							r3d100013478					
+bitterdb.cpd	BitterDB Compound	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.	^\d+$	46		http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1				False			BITTERDB.CPD							bitterdb.cpd	bitterdb.cpd											
+bitterdb.rec	BitterDB Receptor	http://bitterdb.agri.huji.ac.il/dbbitter.php	BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.	^\d+$	1		http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1				False			BITTERDB.REC							bitterdb.rec	bitterdb.rec											
+bko	SBGN Bricks data and ontology	http://www.sbgnbricks.org/	SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way.	^\d+$	0000204	adrienrougny@gmail.com	http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1				False	BKO			BKO																		
+bmrb	Biological Magnetic Resonance Data Bank	http://www.bmrb.wisc.edu/	BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.	^(bmr|bmse|bmst)?[0-9]{1,6}$	15000		http://rest.bmrb.wisc.edu/bmrb/$1/html				False										bmrb								BMRB				
+bmrb.restraint	NMR Restraints Grid	https://restraintsgrid.bmrb.io/NRG/MRGridServlet	The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.	^\d+$	28789		https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1				False																						
+bold.taxonomy	Barcode of Life database	http://www.boldsystems.org/	The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.	^\d+$	27267		http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1				False			BOLD.TAXONOMY							bold.taxonomy	bold.taxonomy											
+bootstrep	Gene Regulation Ontology	http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html				vlee@ebi.ac.uk	http://purl.obolibrary.org/obo/BOOTSTREP_$1				True			BOOTSTREP									bootstrep										
+bpdb	Bio-Pesticides DataBase	https://sitem.herts.ac.uk/aeru/bpdb/index.htm	Database of biopesticides maintained by the University of Hertfordshire 	^\d+$	2404		https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm				False																						
+brenda	BRENDA, The Comprehensive Enzyme Information System	https://www.brenda-enzymes.org/	BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.	^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$	1.1.1.1		https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1				False			BRENDA							brenda	brenda					brenda	r3d100010616	BRENDA				
+brenda.ligand	BRENDA Ligand	https://www.brenda-enzymes.de/ligand.php	Information for ligands in the BRENDA database.	^\d+$	278		https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1				False																						
+brenda.ligandgroup	BRENDA Ligand Group	https://www.brenda-enzymes.de/ligand.php	Information for ligand groups (chemical classes).	^\d+$	18030		https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1				False																						
+broad	Broad Fungal Genome Initiative	https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/	Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.	^S\d+$	S7000002168151102		https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1				False			BROAD							broad	broad											
+bs	Biosapiens Protein Feature Ontology	https://github.com/The-Sequence-Ontology/SO-Ontologies	SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.	^\d+$	00042				https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/subsets/biosapiens.obo		False																						
+bspo	Biological Spatial Ontology	https://github.com/obophenotype/biological-spatial-ontology	An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.	^\d{7}$	0000029	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/BSPO_$1		https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo		False	BSPO		BSPO	BSPO								bspo	bspo	BSPO								
+bto	BRENDA tissue / enzyme source	http://www.brenda-enzymes.org	The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.	^\d{7}$	0000590	c.dudek@tu-braunschweig.de	https://www.ebi.ac.uk/ols/ontologies/bto/terms?obo_id=BTO:$1			BTO	False	BTO		BTO	BTO	BTO					bto	bto	bto	bto	BTO		bto			P5501			
+bugbase.expt	BugBase Expt	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.	^\d+$	288		http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=$1&action=view				False			BUGBASE.EXPT							bugbase.expt	bugbase.expt											
+bugbase.protocol	BugBase Protocol	http://bugs.sgul.ac.uk/E-BUGS	BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.	^\d+$	67		http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=$1&amp;action=view				False			BUGBASE.PROTOCOL							bugbase.protocol	bugbase.protocol											
+bykdb	Bacterial Tyrosine Kinase Database	https://bykdb.ibcp.fr/BYKdb/	The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases,  providing structural and functional information.	^[A-Z0-9]+$	A0A009E7X8		https://bykdb.ibcp.fr/data/html/annotated/$1.html				False			BYKDB							bykdb	bykdb					bykdb					uniprot	
+c4o	Citation Counting and Context Characterisation Ontology	http://www.sparontologies.net/ontologies/c4o	An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.		InTextReferencePointer		http://purl.org/spar/c4o/$1				False																						
+cabri	Common Access to Biological Resources and Information Project	http://www.cabri.org/	CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it.	^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$	dsmz_mutz-id:ACC 291		http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]				False			CABRI						2380	cabri	cabri											
+cadsr	Cancer Data Standards Registry and Repository	https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki	The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR.	^[0-9]*$	3771992		https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]				False										cadsr	cadsr											
+caloha	CALIPHO Group Ontology of Human Anatomy	https://github.com/calipho-sib/controlled-vocabulary	This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.	^TS-\d+$	TS-0001				https://download.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo		False																						
+cameo	Continuous Automated Model Evaluation	https://cameo3d.org	The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on  tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB.	^[0-9\-_]+$	2019-08-03_00000089_1		https://www.cameo3d.org/sp/targets/target/$1				False			CAMEO							cameo	cameo											
+caps	CAPS-DB	http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home	CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.	^\d+$	434		http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1				False			CAPS							caps	caps											
+caro	Common Anatomy Reference Ontology	https://github.com/obophenotype/caro/	None	^\d{7}$	0000000	haendel@ohsu.edu	http://purl.obolibrary.org/obo/CARO_$1				False	CARO		CARO	CARO								caro	caro	CARO								
+cas	CAS Chemical Registry	https://commonchemistry.cas.org/	CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information.	^\d{1,7}\-\d{2}\-\d$	50-00-0		https://commonchemistry.cas.org/detail?ref=$1			CASID|CAS_RN|SECONDARY_CAS_RN|cas_id	False			CAS			000446			1002	cas	cas					cas			P231			
+casspc	Eschmeyer's Catalog of Fishes	https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp		^\d+$	5359		https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1				True																						
+cath	CATH Protein Structural Domain Superfamily	http://www.cathdb.info	CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.	^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$	1.10.8.10		http://www.cathdb.info/cathnode/$1				False			CATH						2700	cath	cath					cath	r3d100012629					
+cath.domain	CATH domain	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.	^\w+$	1cukA01		http://www.cathdb.info/domain/$1				False			CATH.DOMAIN						1040	cath.domain	cath.domain											
+cath.superfamily	CATH superfamily	http://www.cathdb.info/	The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and  Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.	^\d+(\.\d+(\.\d+(\.\d+)?)?)?$	1.10.10.200		http://www.cathdb.info/cathnode/$1				False			CATH.SUPERFAMILY							cath.superfamily	cath.superfamily									cath		
+cattleqtldb	Animal Genome Cattle QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			CATTLEQTLDB							cattleqtldb	cattleqtldb					cattleqtldb				qtldb		
+cazy	Carbohydrate Active EnZYmes	http://www.cazy.org/	The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.	^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$	GT10		http://www.cazy.org/$1.html				False			CAZY							cazy	cazy					cazy		CAZy				
+cba	Chinese Biological Abstracts	http://www.cba.ac.cn	CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.	^\d+$	375364		https://europepmc.org/article/CBA/$1				False																						
+cbioportal	The cBioPortal for Cancer Genomics	http://www.cbioportal.org	The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.	^[a-z0-9\_]+$	laml_tcga_pub		https://www.cbioportal.org/study/summary?id=$1				False										cbioportal	cbioportal											
+ccdc	CCDC Number	https://www.ccdc.cam.ac.uk/	The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.	^\d{6,7}$	1829126		https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG				False										ccdc												
+ccds	Consensus CDS	http://www.ncbi.nlm.nih.gov/CCDS/	The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.	^CCDS\d+\.\d+$	CCDS13573.1		http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1				False			CCDS							ccds	ccds					ccds		CCDS				
+ccle	Cancer Cell Line Encyclopedia Cells	https://www.cbioportal.org/study/summary?id=ccle_broad_2019	Datasets around different cancer cell lines generated by the Broad Institute and Novartis		BT20_BREAST		https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1			ccle.cell	False					CCLE																	
+cco	Cell Cycle Ontology	http://www.semantic-systems-biology.org/apo	The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.	^\w+$	0000003	vladimir.n.mironov@gmail.com	https://www.ebi.ac.uk/ols/ontologies/cco/terms?obo_id=CCO:$1	https://www.bio.ntnu.no/ontology/CCO/cco.owl	https://www.bio.ntnu.no/ontology/CCO/cco.obo		False	CCO		CCO	CCO						cco	cco		cco			cco						
+ccrid	National Experimental Cell Resource Sharing Platform	http://www.cellresource.cn	Cell line databases/resources		4201PAT-CCTCC00348		http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1				False					CCRID																	
+cdao	Comparative Data Analysis Ontology	https://github.com/evoinfo/cdao	The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis.  This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein.  In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units).  The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities.  The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'.  For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'.  The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree.  CDAO provides the framework for representing OTUs, trees, transformations, and characters.  The representation of characters and transformations may depend on imported ontologies for a specific type of character.	^\d{7}$	0000072	balhoff@renci.org	http://purl.obolibrary.org/obo/CDAO_$1				False	CDAO	CDAO	CDAO	CDAO								cdao	cdao	CDAO								
+cdd	Conserved Domain Database at NCBI	https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd	The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.	^(cd)?\d{5}$	cd00400		https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1				False			CDD						2666	cdd	cdd					cdd		CDD				
+cdno	Compositional Dietary Nutrition Ontology	https://cdno.info/	None	^\d{7}$	0000013	l.andres.hernandez.18@student.scu.edu.au	http://purl.obolibrary.org/obo/CDNO_$1				False	CDNO			CDNO								cdno	cdno	CDNO								
+cdpd	Canadian Drug Product Database	http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp	The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).	^\d+$	63250		http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1				False			CDPD							cdpd	cdpd											
+cdt	Current Dental Terminology	https://www.ada.org/publications/CDT	The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.	^\d{7}$	1000001			https://github.com/oral-health-and-disease-ontologies/ohd-ontology/blob/master/src/ontology/older/CDTCodes%20as%20Classes_pruned.owl			False																						
+cell_biolabs	Cell Biolabs cell line products	https://www.cellbiolabs.com	Cell line collections		AKR-270		https://www.cellbiolabs.com/search?keywords=$1				False					Cell_Biolabs																	
+cell_model_passport	Sanger Cell Model Passports	https://cellmodelpassports.sanger.ac.uk/	Cell line databases/resources		SIDM01262		https://cellmodelpassports.sanger.ac.uk/passports/$1				False					Cell_Model_Passport																	
+cellbank.australia	CellBank Australia	http://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/	CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.		ab-1-ha		https://www.cellbankaustralia.com/$1.html				False					CBA																	
+cellimage	Cell Image Library	http://cellimagelibrary.org/	The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.	^\d+$	24801		http://cellimagelibrary.org/images/$1				False			CELLIMAGE							cellimage	cellimage					cellimage						
+cellopub	Cellosaurus Publication	https://web.expasy.org/cellosaurus/	Cellosaurus identifeirs for publications, like Pubmed		CLPUB00496		https://web.expasy.org/cellosaurus/cellopub/$1				False					CelloPub																	
+cellosaurus	Cellosaurus	https://web.expasy.org/cellosaurus/	The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.	^[A-Z0-9]{4}$	0440		https://web.expasy.org/cellosaurus/CVCL_$1		https://ftp.expasy.org/databases/cellosaurus/cellosaurus.obo	CVCL	False			CELLOSAURUS		Cellosaurus					cellosaurus	cellosaurus						r3d100013293		P3289			
+cellosaurus.resource	Cellosaurus Registry	https://web.expasy.org/cellosaurus/	The set of prefixes used in the Cellosaurus resource		4DN		https://bioregistry.io/metaregistry/cellosaurus/$1				False																						
+cellrepo	Cell Version Control Repository	https://cellrepo.ico2s.org/	The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines	^[0-9]+$	82		https://cellrepo.ico2s.org/repositories/$1				False										cellrepo												
+ceph	Cephalopod Ontology	https://github.com/obophenotype/cephalopod-ontology	An anatomical and developmental ontology for cephalopods	^\d{7}$	0000109	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CEPH_$1		https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo		True	CEPH		CEPH	CEPH								ceph	ceph	CEPH								
+cgd	Candida Genome Database	http://www.candidagenome.org/	The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.	^CAL\d{7}$	CAL0003079		http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1				False			CGD							cgd	cgd					cgd		CGD				
+cghdb	CGH Data Base	http://www.cghtmd.jp/CGHDatabase/index_e.jsp	Cell line databases/resources		300165/p13898_2106T		http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en				False					CGH-DB																	
+cgnc	Chicken Gene Nomenclature Consortium	http://birdgenenames.org/cgnc/	Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)	^\d+$	10087		http://birdgenenames.org/cgnc/GeneReport?id=$1			BirdBase|CGNC	False																cgnc	r3d100012429					
+cgsc	Coli Genetic Stock Center	http://cgsc.biology.yale.edu/index.php	The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.	^\d+$	74		http://cgsc.biology.yale.edu/Site.php?ID=$1				False			CGSC							cgsc	cgsc					cgsc						
+charprot	CharProt	http://www.jcvi.org/charprotdb	CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.	^CH_\d+$	CH_001923		http://www.jcvi.org/charprotdb/index.cgi/view/$1				False			CHARPROT							charprot	charprot											
+chebi	Chemical Entities of Biological Interest	http://www.ebi.ac.uk/chebi	Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.	^\d+$	24867	amalik@ebi.ac.uk	https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1			CHEBI|CHEBIID|ChEBI	False	CHEBI		CHEBI	CHEBI	ChEBI	000407			1174	chebi	chebi	chebi	chebi	CHEBI		chebi	r3d100012626		P683			
+chembl	ChEMBL	https://www.ebi.ac.uk/chembl	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL4303805		https://www.ebi.ac.uk/chembl/entity/$1			ChEMBL|ChEMBL_ID|chembl	False						000412				chembl						chembl	r3d100010539	ChEMBL				
+chembl.cell	ChEMBL database of bioactive drug-like small molecules - Cell lines section	https://www.ebi.ac.uk/chembldb	Chemistry resources		CHEMBL3307800		https://www.ebi.ac.uk/chembl/cell_line_report_card/$1			ChEMBL-Cells	False					ChEMBL-Cells															chembl		
+chembl.compound	ChEMBL	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL465070		https://www.ebi.ac.uk/chembl/compound/inspect/$1				False			CHEMBL.COMPOUND						2646	chembl.compound	chembl.compound								P592	chembl		
+chembl.target	ChEMBL target	https://www.ebi.ac.uk/chembldb/	ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.	^CHEMBL\d+$	CHEMBL3467		https://www.ebi.ac.uk/chembl/target/inspect/$1			ChEMBL-Targets	False			CHEMBL.TARGET		ChEMBL-Targets					chembl.target	chembl.target									chembl		
+chemdb	ChemDB	http://cdb.ics.uci.edu/	ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.	^\d+$	3966782		http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1				False			CHEMDB							chemdb	chemdb					chemdb						
+chemidplus	ChemIDplus	https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp	ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.	^\d+\-\d+\-\d+$	57-27-2		https://chem.nlm.nih.gov/chemidplus/rn/$1			ChemIDplus	False			CHEMIDPLUS						2658	chemidplus	chemidplus					chemidplus						
+cheminf	Chemical Information Ontology	https://github.com/semanticchemistry/semanticchemistry	Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.	^\d{6}$	000410	egon.willighagen@gmail.com	http://purl.obolibrary.org/obo/CHEMINF_$1	https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl			False	CHEMINF		CHEMINF	CHEMINF								cheminf	cheminf	CHEMINF								
+chemspider	ChemSpider	http://www.chemspider.com/	ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.	^\d+$	56586		http://www.chemspider.com/Chemical-Structure.$1.html			ChemSpiderID|Chemspider	False			CHEMSPIDER			000405			1173	chemspider	chemspider					chemspider	r3d100010205		P661			
+chickenqtldb	Animal Genome Chicken QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.	^\d+$	14362		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			CHICKENQTLDB							chickenqtldb	chickenqtldb					chickenqtldb				qtldb		
+chiro	ChEBI Integrated Role Ontology	https://github.com/obophenotype/chiro	CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.			vasilevs@ohsu.edu	http://purl.obolibrary.org/obo/CHIRO_$1				False	CHIRO			CHIRO								chiro	chiro	CHIRO								
+chmo	Chemical Methods Ontology	https://github.com/rsc-ontologies/rsc-cmo	CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).	^\d{7}$	0002902	batchelorc@rsc.org	http://purl.obolibrary.org/obo/CHMO_$1				False	CHMO		CHMO	CHMO								chmo	chmo	CHMO								
+cido	Coronavirus Infectious Disease Ontology	https://github.com/cido-ontology/cido	The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.	^\d{7}$	0000005	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/CIDO_$1				False	CIDO			CIDO								cido	cido	CIDO								
+cio	Confidence Information Ontology	https://github.com/BgeeDB/confidence-information-ontology	An ontology to capture confidence information about annotations.	^\d{7}$	0000040	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/CIO_$1				False	CIO		CIO	CIO								cio	cio	CIO								
+citexplore	CiteXplore	https://www.ebi.ac.uk/citexplore/	One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes.		C6155		https://europepmc.org/article/CTX/$1			CTX	False																citexplore						
+cito	Citation Typing Ontology	http://www.sparontologies.net/ontologies/cito	An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.		sharesAuthorInstitutionWith		http://purl.org/spar/cito/$1				False																						
+civic.aid	CIViC Assertion	https://civicdb.org/	A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.	^[0-9]+$	3		https://civicdb.org/links/assertions/$1				False										civic.aid												
+civic.eid	CIViC Evidence	https://civicdb.org/	Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).	^[0-9]+$	1199		https://civicdb.org/links/evidence/$1				False										civic.eid												
+cl	Cell Ontology	https://obophenotype.github.io/cell-ontology/	The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.	^\d{7}$	0000062	addiehl@buffalo.edu	https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:$1		https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo		False	CL	CL	CL	CL	CL					cl	cl	cl	cl	CL		cl			P7963			
+clao	Collembola Anatomy Ontology	https://github.com/luis-gonzalez-m/Collembola	CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).	^\d{7}$	0000088	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/CLAO_$1				False	CLAO			CLAO								clao	clao	CLAO								
+classyfire	ClassyFire	http://classyfire.wishartlab.com/	ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.	^\d{7}$	0004828		http://classyfire.wishartlab.com/tax_nodes/C$1		http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip	CHEMONTID	False										classyfire												
+cldb	Cell Line Database	http://bioinformatics.hsanmartino.it/hypercldb/indexes.html	The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through  distributors, allowing cell line requests to be made from collections and laboratories.	^(cl|tum)\d+$	cl3603		http://bioinformatics.hsanmartino.it/hypercldb/$1.html				False			CLDB		CLDB					cldb	cldb											
+clingene	ClinGen Allele Registry	https://reg.clinicalgenome.org	The allele registry provides and maintains identifiers for genetic variants		CA981206459		https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1				False																						
+clinicaltrials	ClinicalTrials.gov	https://clinicaltrials.gov/	ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries	^NCT\d{8}$	NCT00222573		https://clinicaltrials.gov/ct2/show/$1				False			CLINICALTRIALS							clinicaltrials	clinicaltrials					clinicaltrials						
+clinvar	ClinVar Variation	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.	^\d+$	12345		https://www.ncbi.nlm.nih.gov/clinvar/variation/$1				False			ClinVar		ClinVar					clinvar	clinvar						r3d100013331		P1929			
+clinvar.record	ClinVar Record	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.	^RCV\d+(\.\d+)?$	RCV000033555.3		http://www.ncbi.nlm.nih.gov/clinvar/$1				False			CLINVAR.RECORD							clinvar.record	clinvar.record											
+clinvar.submission	ClinVar Submission	http://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.	^SCV\d+(\.\d+)?$	SCV000151292		http://www.ncbi.nlm.nih.gov/clinvar?term=$1				False			CLINVAR.SUBMISSION							clinvar.submission	clinvar.submission											
+clinvar.submitter	ClinVar Submitter	https://www.ncbi.nlm.nih.gov/clinvar/	ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).	^\d+$	26957		https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1				False										clinvar.submitter												
+clo	Cell Line Ontology	http://www.clo-ontology.org	The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.	^\d{7}$	0000091	siiraa@umich.edu	http://purl.obolibrary.org/obo/CLO_$1			CLO	False	CLO		CLO	CLO	CLO							clo	clo	CLO		clo			P2158			
+cls	Cell Lines Service	https://cls.shop/	Cell line collections		300108/p3934_A-172		https://cls.shop/$1				False					CLS																	
+clyh	Clytia hemisphaerica Development and Anatomy Ontology	https://github.com/EBISPOT/clyh_ontology	Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica.	^\d+$	1000100	lucas.leclere@obs-vlfr.fr	http://purl.obolibrary.org/obo/CLYH_$1				False	CLYH			CLYH								clyh	clyh	CLYH								
+cmecs	Costal and Marine Ecological Classification Standard	https://cmecscatalog.org/cmecs	Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.	^\d+$	595		https://cmecscatalog.org/cmecs/classification/unit/$1.html				False																						
+cmf	CranioMaxilloFacial ontology	https://code.google.com/p/craniomaxillofacial-ontology/	This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain			engelsta@ohsu.edu	http://purl.obolibrary.org/obo/CMF_$1				True	CMF		CMF									cmf		CMF								
+cmo	Clinical measurement ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	Morphological and physiological measurement records generated from clinical and model organism research and health programs.	^\d{7}$	0001350	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/CMO_$1				False	CMO		CMO	CMO								cmo	cmo	CMO								
+cmpo	Cellular Microscopy Phenotype Ontology	http://www.ebi.ac.uk/cmpo	CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.	^\d{7}$	0000435	jupp@ebi.ac.uk					False	CMPO			CMPO									cmpo									
+co_320	Rice ontology	https://cropontology.org/ontology/CO_320/Rice	Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables	^\d{7}$	0000618	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_320:$1				False		CO_320					CO_320						co_320									
+co_321	Wheat ontology	https://cropontology.org/ontology/CO_321/Wheat	July 2018	^\d{7}$	0000449	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_321:$1				False		CO_321					CO_321						co_321									
+co_322	Maize ontology	https://cropontology.org/ontology/CO_322/Maize	Maize Trait Dictionary in template 5 - CIMMYT- September 2016	^\d{7}$	0000773	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_322:$1				False		CO_322					CO_322						co_322									
+co_323	Barley ontology	https://cropontology.org/ontology/CO_323/Barley	ICARDA - TDv5 - Sept 2018	^\d{7}$	0000252	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_323:$1				False		CO_323					CO_323						co_323									
+co_324	Sorghum ontology	https://cropontology.org/ontology/CO_324/Sorghum	Sorghum TDv5 - Oct 2019	^\d{7}$	0000111	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_324:$1				False		CO_324					CO_324						co_324									
+co_325	Banana ontology	https://cropontology.org/ontology/CO_325/Banana	Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019	^\d{7}$	0000519	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_325:$1				False		CO_325					CO_325						co_325									
+co_326	Coconut ontology	https://cropontology.org/ontology/CO_326/Coconut	Draft version	^\d{7}$	0000254	helpdesk@cropontology-curationtool.org					False							CO_326						co_326									
+co_327	Pearl millet ontology	http://www.cropontology.org/ontology/CO_327/Pearl%20millet	Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016	^\d{7}$	0000095	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_327:$1				False		CO_327					CO_327						co_327									
+co_330	Potato ontology	https://cropontology.org/ontology/CO_330/Potato	CIP - potato ontology - december 2018	^\d{7}$	0000106	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_330:$1				False		CO_330					CO_330						co_330									
+co_331	Sweet Potato ontology	http://www.cropontology.org/ontology/CO_331/Sweet%20Potato	Sweet Potato Trait Dictionary in template v5 - CIP - November 2019	^\d{7}$	0000088	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_331:$1				False		CO_331					CO_331						co_331									
+co_333	Beet Ontology ontology	http://www.cropontology.org/ontology/CO_333/Beet%20Ontology	This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.	^\d+$	3000045	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_333:$1				False		CO_333					CO_333						co_333									
+co_334	Cassava ontology	https://cropontology.org/ontology/CO_334/Cassava	Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016	^\d{7}$	0000070	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_334:$1				False		CO_334					CO_334						co_334									
+co_335	Common Bean ontology	http://www.cropontology.org/ontology/CO_335/Common%20Bean	CIAT Common bean trait dictionary - version August 2014	^\d{7}$	0000189	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_335:$1				False		CO_335					CO_335						co_335									
+co_336	Soybean ontology	https://cropontology.org/ontology/CO_336/Soybean	Soybean Trait Dictionary in template v5 - IITA - July 2015	^\d{7}$	0000339	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_336:$1				False		CO_336					CO_336						co_336									
+co_337	Groundnut ontology	https://cropontology.org/ontology/CO_337/Groundnut	Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015	^\d{7}$	0000054	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_337:$1				False		CO_337					CO_337						co_337									
+co_338	Chickpea ontology	https://cropontology.org/ontology/CO_338/Chickpea	Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000138	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_338:$1				False		CO_338					CO_338						co_338									
+co_339	Lentil ontology	https://cropontology.org/ontology/CO_339/Lentil	Lentil Trait Dictionary in template v5 - ICARDA - July 2015	^\d{7}$	0000032	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_339:$1				False		CO_339					CO_339						co_339									
+co_340	Cowpea ontology	https://cropontology.org/ontology/CO_340/Cowpea	Cowpea Trait Dictionary in template v5 - IITA - August 2015	^\d{7}$	0000639	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_340:$1				False		CO_340					CO_340						co_340									
+co_341	Pigeonpea ontology	https://cropontology.org/ontology/CO_341/Pigeonpea	Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015	^\d{7}$	0000140	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_341:$1				False		CO_341					CO_341						co_341									
+co_343	Yam ontology	https://cropontology.org/ontology/CO_343/Yam	version 2019 - pvs	^\d{7}$	0100010	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_343:$1				False		CO_343					CO_343						co_343									
+co_345	Brachiaria ontology	https://cropontology.org/ontology/CO_345/Brachiaria	Brachiaria (forages) ontology TD v5 - Version Oct 2016	^\d{7}$	0000127	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_345:$1				False		CO_345					CO_345						co_345									
+co_346	Mungbean ontology	https://cropontology.org/ontology/CO_346/Mungbean	oct 2016	^\d{7}$	0000199	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_346:$1				False		CO_346					CO_346						co_346									
+co_347	Castor bean ontology	http://www.cropontology.org/ontology/CO_347/Castor%20bean	March 2017 version 	^\d{7}$	0000108	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_347:$1				False		CO_347					CO_347						co_347									
+co_348	Brassica ontology	https://cropontology.org/ontology/CO_348/Brassica	Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).	^\d+$	1100107	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_348:$1				False		CO_348					CO_348						co_348									
+co_350	Oat ontology	https://cropontology.org/ontology/CO_350/Oat	Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo	^\d{7}$	0000215	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_350:$1				False		CO_350					CO_350						co_350									
+co_356	Vitis ontology	https://cropontology.org/ontology/CO_356/Vitis	Grape Ontology including OIV and bioversity descriptors. INRA July 2017	^\d+$	4000027	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_356:$1				False		CO_356					CO_356						co_356									
+co_357	Woody Plant Ontology ontology	http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology	This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.	^\d+$	1000290	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_357:$1				False		CO_357					CO_357						co_357									
+co_358	Cotton ontology	https://cropontology.org/ontology/CO_358/Cotton	Cotton ontology from CottonGen database - June 2019	^\d{7}$	0000139	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_358:$1				False		CO_358					CO_358						co_358									
+co_359	Sunflower ontology	https://cropontology.org/ontology/CO_359/Sunflower	December 2019	^\d{7}$	0000947	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_359:$1				False		CO_359					CO_359						co_359									
+co_360	Sugar Kelp trait ontology	http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait	Sugar Kelp trait ontology	^\d{7}$	0000071	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_360:$1				False		CO_360					CO_360						co_360									
+co_365	Fababean ontology	https://cropontology.org/ontology/CO_365/Fababean	developed by ICARDA - Dec 2018	^\d{7}$	0000205	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_365:$1				False		CO_365					CO_365						co_365									
+co_366	Bambara groundnut ontology	http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut	version Dec 2019	^\d{7}$	0000072	helpdesk@cropontology-curationtool.org	https://www.cropontology.org/rdf/CO_366:$1				False		CO_366					CO_366						co_366									
+cob	Core Ontology for Biology and Biomedicine	https://github.com/OBOFoundry/COB	COB brings together key terms from a wide range of OBO projects to improve interoperability.	^\d{7}$	0000080	bpeters@lji.org	http://purl.obolibrary.org/obo/COB_$1				False	COB			COB								cob	cob	COB								
+coconut	COlleCtion of Open Natural ProdUcTs	https://coconut.naturalproducts.net	"COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a ""flat"" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."	^CNP\d{7}$	CNP0171505		https://coconut.naturalproducts.net/compound/coconut_id/$1				False																						
+codelink	GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray	https://www.ebi.ac.uk/arrayexpress/files/A-GEHB-1/A-GEHB-1.adf.txt	GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release).	^GE\d+$	GE86325						False																						
+cog	Cluster of orthologous genes	https://www.ncbi.nlm.nih.gov/research/cog/	COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.	^COG\d+$	COG0001	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cog/$1			COG_Cluster	False																cog						
+cog.category	COG Categories	https://www.ncbi.nlm.nih.gov/research/cog/	Higher-level classifications of COG Pathways		K	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1				False																				cog		
+cog.pathway	COG Pathways	https://www.ncbi.nlm.nih.gov/research/cog/pathways	Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera.		NAD%20biosynthesis	cogs@ncbi.nlm.nih.gov	https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1				False																				cog		
+cohd	MIMIC III Database	https://github.com/MIT-LCP/mimic-omop	MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012								False																						
+col.taiwan	Catalogue of Life in Taiwan	http://taibnet.sinica.edu.tw/home.php	Identifier (name code) for a taxon in the catalogue of life in taiwan	^[1-9]\d{5}$	431472		https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1				False																			P3088			
+colao	Coleoptera Anatomy Ontology	https://github.com/insect-morphology/colao	The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.	^\d{7}$	0000000	entiminae@gmail.com	http://purl.obolibrary.org/obo/COLAO_$1				False	COLAO			COLAO								colao	colao	COLAO								
+colonatlas	Colorectal Cancer Atlas	http://www.coloncanceratlas.org	Cell line databases/resources		ALA		http://www.coloncanceratlas.org/search_cell_line?cell_line=$1				False					ColonAtlas																	
+combine.specifications	COMBINE specifications	https://co.mbine.org/standards/	The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.	^\w+(\-|\.|\w)*$	sbgn.er.level-1.version-1.2		https://co.mbine.org/specifications/$1				False			COMBINE.SPECIFICATIONS							combine.specifications	combine.specifications											
+come	The Bioinorganic Motif Database	https://www.flymine.org/come	COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.		MOL000160		https://www.flymine.org/come/entry?gn=$1				False																come						
+complexportal	Complex Portal	https://www.ebi.ac.uk/complexportal	A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.	^CPX-[0-9]+$	CPX-263		https://www.ebi.ac.uk/complexportal/complex/$1			ComplexPortal	False			COMPLEXPORTAL							complexportal	complexportal						r3d100013295	ComplexPortal	P7718			
+comptox	CompTox Chemistry Dashboard	https://comptox.epa.gov/dashboard	The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.	^DTXSID\d+$	DTXSID2021028		https://comptox.epa.gov/dashboard/$1				False			COMPTOX							comptox	comptox								P3117			
+compulyeast	Compluyeast-2D-DB	http://compluyeast2dpage.dacya.ucm.es/	Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	O08709		http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1				False			COMPULYEAST							compulyeast	compulyeast										uniprot	
+conoserver	ConoServer	http://www.conoserver.org/	ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.	^\d+$	2639		http://www.conoserver.org/?page=card&table=protein&id=$1				False			CONOSERVER							conoserver	conoserver							ConoServer				
+conso	Curation of Neurodegeneration Supporting Ontology	https://pharmacome.github.io/conso/	An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.	^CONSO\d{5}$	CONSO00010		https://pharmacome.github.io/conso/$1				False																						
+cordis.article	CORDIS Article	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	436605		https://cordis.europa.eu/article/id/$1				False																						
+cordis.project	CORDIS Project	https://cordis.europa.eu/	The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).	^\d+$	817732		https://cordis.europa.eu/project/id/$1				False																						
+coriell	Coriell Institute for Medical Research	http://ccr.coriell.org/	The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.	^[A-Z]{2}\d+$	GM17027		http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1				False			Coriell		Coriell					coriell	coriell											
+corrdb	CorrDB	https://www.animalgenome.org	A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.	^[0-9]+$	37232		https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1				False										corrdb							r3d100011496					
+corum	Comprehensive Resource of Mammalian protein complexes	https://mips.helmholtz-muenchen.de/genre/proj/corum/	The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.	^\d+$	100		https://mips.helmholtz-muenchen.de/corum/?id=$1				False			CORUM							corum	corum					corum		CORUM				
+cosmic	COSMIC Gene	http://cancer.sanger.ac.uk/cosmic/	COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.	^[A-Z0-9]+$	BRAF		http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1				False			COSMIC		Cosmic				3264	cosmic	cosmic											
+cosmic.cell	COSMIC Cell Lines	https://cancer.sanger.ac.uk/cell_lines/	COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer	^\d+$	906801		https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1				False					Cosmic-CLP																	
+covid19	COVID-19 Surveillance Ontology	https://covid19.sfb.uit.no	Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.	^\w+_COVID19_[-\w]+$	SFB_COVID19_MW286762		https://covid19.sfb.uit.no/api/records/$1				False	COVID19			COVID19						covid19												
+covoc	CoVoc Coronavirus Vocabulary	https://github.com/EBISPOT/covoc	The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.	^\d{7}$	0010034	zmp@ebi.ac.uk					False													covoc									
+cp	Cellular Phenotypes										True																						
+cpc	Cooperative Patent Classification	https://worldwide.espacenet.com/classification	The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.	^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$	A01M1/026		https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1				False			CPC							cpc	cpc											
+cpga	Cereal Plant Gross Anatomy	http://www.gramene.org/plant_ontology/	A structured controlled vocabulary for the anatomy of Graminae. Please note that this ontology has now been superseded by the Plant Ontology.			po-discuss@plantontology.org					True			gro.cpga	GRO-CPGA								gro										
+cpt	Current Procedural Terminology	https://www.aapc.com	Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]	^\d+$	00103		https://www.aapc.com/codes/cpt-codes/$1				False	CPT			CPT																		
+credit	CASRAI Contributor Roles Taxonomy	https://casrai.org/credit/	CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.		Software						False																						
+crisprdb	CRISPRdb	http://crispr.i2bc.paris-saclay.fr/	"Repeated CRISPR (""clustered regularly interspaced short palindromic repeats"") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."	^[0-9]+$	551115		http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1				False			CRISPRDB							crisprdb	crisprdb											
+cro	Contributor Role Ontology	https://github.com/data2health/contributor-role-ontology	A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.	^\d{7}$	0000038	whimar@ohsu.edu	http://purl.obolibrary.org/obo/CRO_$1		https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo		False	CRO		CRO	CRO								cro	cro	CRO								
+cryoem	Cryo Electron Microscopy ontology	http://scipion.i2pc.es/ontology/cryoem	Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles	^\d{7}$	0000052	isanchez@cnb.csic.es					False	CRYOEM			CRYOEM									cryoem									
+cryptodb	CryptoDB	https://cryptodb.org/cryptodb/	CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	cgd7_230		https://cryptodb.org/cryptodb/app/record/gene/$1				False			CRYPTODB							cryptodb	cryptodb					cryptodb	r3d100012265					
+csa	Catalytic Site Atlas	https://www.ebi.ac.uk/thornton-srv/databases/CSA/	The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.	^[0-9][A-Za-z0-9]{3}$	1a05		https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1				False			CSA							csa	csa					csa						
+csd	Cambridge Structural Database	https://www.ccdc.cam.ac.uk/	The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.	^[A-Z]{6}(\d{2})?$	PELNAW		https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG				False										csd												
+csp	Computer Retrieval of Information on Science Projects Thesaurus	https://web.archive.org/web/20091223034048/http://crisp.cit.nih.gov/Thesaurus/index.htm			2004-2820					CRISP|CRISP Thesaurus|CRISP Thesaurus, 2006|CSP2005	True	CRISP			CRISP																		
+cst	Cancer Staging Terms	http://www.cellsignal.com/pathways/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.	^[A-Za-z0-9_-]+$	Akt_PKB		http://www.cellsignal.com/reference/pathway/$1.html				False	CST		CST	CST						cst	cst					cst						
+cst.ab	Cell Signaling Technology Antibody	http://www.cellsignal.com/catalog/index.html	Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.	^\d+$	3305		http://www.cellsignal.com/products/$1.html				False			CST.AB							cst.ab	cst.ab											
+ctd.chemical	CTD Chemical	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^[CD]\d+$	D001151		http://ctdbase.org/detail.go?type=chem&acc=$1				False			CTD.CHEMICAL							ctd.chemical	ctd.chemical									ctd	mesh	
+ctd.disease	CTD Disease	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^D\d+$	D053716		http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1				False			CTD.DISEASE							ctd.disease	ctd.disease									ctd	mesh	
+ctd.gene	CTD Gene	http://ctdbase.org/	The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.	^\d+$	101		http://ctdbase.org/detail.go?type=gene&acc=$1				False			CTD.GENE							ctd.gene	ctd.gene									ctd	ncbigene	
+cteno	Ctenophore Ontology	https://github.com/obophenotype/ctenophore-ontology	An anatomical and developmental ontology for ctenophores (Comb Jellies)	^\d{7}$	0000047	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/CTENO_$1		https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo		False	CTENO		CTENO	CTENO								cteno	cteno	CTENO								
+cto	Clinical Trials Ontology	https://github.com/ClinicalTrialOntology/CTO/	The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.	^\d{7}$	0000022	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/CTO_$1				False	CTO			CTO								cto	cto	CTO								
+cubedb	Cube db	http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html	Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.	^[A-Za-z_0-9]+$	AKR		http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/				True			CUBEDB							cubedb	cubedb											
+cvdo	Cardiovascular Disease Ontology	https://github.com/OpenLHS/CVDO	An ontology to describe entities related to cardiovascular diseases	^\d{7}$	0000546	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/CVDO_$1				False	CVDO		CVDO	CVDO								cvdo	cvdo	CVDO								
+d1id	DataONE	https://www.dataone.org	DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences.	^\S+$	00030692-0FE1-4A1B-955E-A2E55D659267		https://cn.dataone.org/cn/v2/resolve/{$1}				False			D1ID							d1id	d1id											
+dailymed	DailyMed	https://dailymed.nlm.nih.gov/dailymed/	DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.	^[A-Za-z0-9-]+$	973a9333-fec7-46dd-8eb5-25738f06ee54		https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1				False			DAILYMED							dailymed	dailymed					dailymed						
 dandi	Distributed Archives for Neurophysiology Data Integration	https://dandiarchive.org/	"DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).
 DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.
-These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."	^\d{6}(\/\d+\.\d+\.\d+)?$	000017		https://dandiarchive.org/dandiset/$1				False										dandi											
-darc	Database of Aligned Ribosomal Complexes	http://darcsite.genzentrum.lmu.de/darc/index.php	DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors.	^\d+$	1250		http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1				False			DARC							darc	darc										
-dashr	Database of small human noncoding RNAs	http://lisanwanglab.org/DASHR/	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a		http://lisanwanglab.org/DASHR/entry/$1				False			DASHR							dashr	dashr										
-dashr.expression	DASHR expression	https://dashr1.lisanwanglab.org/show-expression-table.php?start=0	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a		https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable				False			DASHR.EXPRESSION							dashr.expression	dashr.expression										
-datacite	DataCite Ontology	http://www.sparontologies.net/ontologies/datacite	An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.		AgentIdentifierScheme		http://purl.org/spar/datacite/$1				False	DATACITE			DATACITE																	
-datanator.gene	Datanator Gene	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^K[0-9]+$	K00973		https://www.datanator.info/gene/$1				False										datanator.gene									datanator		
-datanator.metabolite	Datanator Metabolite	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^[A-Z\-]+$	OUYCCCASQSFEME-MRVPVSSYSA-N		https://www.datanator.info/metabolite/$1				False										datanator.metabolite									datanator		
-datanator.reaction	Datanator Reaction	https://icahn.mssm.edu/	"	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."	^.*?--%3E.*?$	XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N		https://datanator.info/reaction/$1				False										datanator.reaction											
-datf	Database of Arabidopsis Transcription Factors	http://datf.cbi.pku.edu.cn/	DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.	^AT[1-5]G\d{5}(\.\d+)?$	AT1G01030.1		http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1				True			DATF							datf	datf					datf					
-dbd	Transcription Factor Database	http://www.transcriptionfactor.org/	The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.	^\d+$	0045310		http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD				False			DBD						2716	dbd	dbd					dbd					
-dbest	EST database maintained at the NCBI.	https://www.ncbi.nlm.nih.gov/nucest	"The dbEST contains sequence data and other information on ""single-pass"" cDNA sequences, or ""Expressed Sequence Tags"", from a number of organisms."	^([A-Z]+)?\d+(\.\d+)?$	BP100000		https://www.ncbi.nlm.nih.gov/nucest/$1				False			DBEST						1105	dbest	dbest					dbest					
-dbg2introns	DBG2 Introns	http://webapps2.ucalgary.ca/~groupii/	The Database for Bacterial Group II Introns  provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.	^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$	Cu.me.I1		http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1				False			DBG2INTRONS							dbg2introns	dbg2introns										
-dbgap	Database of Genotypes and Phenotypes	https://www.ncbi.nlm.nih.gov/projects/gap	The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.	^phs[0-9]{6}(.v\d+.p\d+)?$	phs000768.v2.p1		https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1				False			DBGAP							dbgap	dbgap										
-dbmhc	Database of human Major Histocompatibility Complex	https://www.ncbi.nlm.nih.gov/gv/mhc/	Cell line databases/resources	^\d+$	48439						True					dbMHC																
-dbprobe	NCBI Probe database Public registry of nucleic acid reagents	https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe	The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.	^\d+$	1000000		https://www.ncbi.nlm.nih.gov/probe/?term=$1				False			DBPROBE						2719	dbprobe	dbprobe					dbprobe					
-dbsnp	NCBI dbSNP	https://www.ncbi.nlm.nih.gov/snp/	The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.	^rs\d+$	rs121909098		https://www.ncbi.nlm.nih.gov/snp/$1				False			dbSNP		dbSNP				1106	dbsnp	dbsnp					dbsnp	dbSNP				
-dbvar.study	Database of Genomic Structural Variation - Study	https://www.ncbi.nlm.nih.gov/dbvar	Studies in dbVar.		nstd102		https://www.ncbi.nlm.nih.gov/dbvar/studies/$1			dbvar.studies	False																					
-dbvar.variant	Database of Genomic Structural Variation - Variant	https://www.ncbi.nlm.nih.gov/dbvar	Variants in dbVar.		nsv3875336		https://www.ncbi.nlm.nih.gov/dbvar/variants/$1			dbvar.variants	False																					
-dc	Dublin Core	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		contributor		http://purl.org/dc/terms/$1				False	DC		dc	DC																	dcterms
-dc_cl	Dendritic cell	http://www.dukeontologygroup.org/Projects.html		^\d{7}$	0000003	Lindsay.Cowell@utsouthwestern.edu	http://purl.obolibrary.org/obo/DC_CL_$1				True			DC_CL									dc_cl									
-dcat	Data Catalog	https://www.w3.org/ns/dcat	DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web		Dataset		http://www.w3.org/ns/dcat#$1				False	DCAT		dcat	DCAT																	
-dcterms	Dublin Core Metadata Vocabulary	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		title		http://purl.org/dc/terms/$1			dc.terms	False	dcterms		dcterms	DCTERMS																	
-dctypes	Dublin Core Types	https://dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		Collection		http://purl.org/dc/dcmitype/$1				False			dctypes																		
-ddanat	Dictyostelium discoideum anatomy	http://dictybase.org/	A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum	^\d{7}$	0000006	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDANAT_$1				False	DDANAT		DDANAT	DDANAT								ddanat	ddanat	DDANAT		ddanat					
-ddpheno	Dictyostelium discoideum phenotype ontology	http://dictybase.org/	A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.	^\d{7}$	0001417	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDPHENO_$1		https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo		False	DDPHENO		DDPHENO	DDPHENO								ddpheno	ddpheno	DDPHENO							
-debio	Decentralized Biomedical Ontology	https://biopragmatics.github.io/debio	A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.	^\d{7}$	0000001	cthoyt@gmail.com	https://biopragmatics.github.io/debio/$1				False																					
-decipher	DECIPHER CNV Syndromes	https://www.deciphergenomics.org/	CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms	^\d+$	1		https://www.deciphergenomics.org/syndrome/$1				False			DECIPHER																		
-degradome	Degradome Database	http://degradome.uniovi.es/	The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.	^[AMCST][0-9x][0-9]$	Ax1		http://degradome.uniovi.es/cgi-bin/protease/$1				False			DEGRADOME							degradome	degradome										
-deo	Discourse Elements Ontology	http://www.sparontologies.net/ontologies/deo	An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO.		Reference		http://purl.org/spar/deo/$1				False																					
-depmap	DepMap Cell Lines	https://depmap.org/portal	Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.	^ACH-\d+$	ACH-000001		https://depmap.org/portal/cell_line/$1				False					DepMap																
-depod	Human Dephosphorylation Database	http://www.depod.bioss.uni-freiburg.de	The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.	^[A-Z0-9]+$	PTPN1		http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1				False			DEPOD							depod	depod						DEPOD			hgnc.symbol	
-dermo	Human Dermatological Disease Ontology	https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x	DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders	^\d{7}$	0000000						False	DERMO			DERMO																	
-dev.ga4ghdos	Development Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#\.]+$	23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00		https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1				False			DEV.GA4GHDOS							dev.ga4ghdos	dev.ga4ghdos										
-dg.4503	BioData Catalyst	https://gen3.biodatacatalyst.nhlbi.nih.gov	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	0000ffeb-36e0-4a29-b21d-84423bda979d		https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1				False										dg.4503											
-dg.4dfc	NCI Data Commons Framework Services	https://nci-crdc.datacommons.io/	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	81944ba1-81d0-436e-8552-33d77a27834b		https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1				False										dg.4dfc											
-dg.6vts	JCOIN	https://jcoin.datacommons.io	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	2afacf00-9a1d-4d80-8c32-69d3923d3913		https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1				False										dg.6vts											
-dg.anv0	Anvil	https://gen3.theanvil.io	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$	00077f1c-c45a-47ba-8e6c-1bf6b6b43fce		https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1				False										dg.anv0											
-dg.f82a1a	Kids First	https://kidsfirstdrc.org	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00026f50-858a-446b-8ed9-b0e3ecd7b20e		https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1				False										dg.f82a1a											
-dg5b0d	BloodPAC	https://data.bloodpac.org/.	The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00000d53-99bc-4d3e-8ed7-6dc358baccb7		https://data.bloodpac.org/ga4gh/drs/v1/objects/$1				False										dg.5b0d											
-dgrc	Drosophila Genomics Resource Center	https://dgrc.bio.indiana.edu/cells/Catalog	Cell line collections	^\d+$	215		https://dgrc.bio.indiana.edu/product/View?product=$1				False					DGRC																
-dhba	Developing Human Brain Atlas	https://www.brainspan.org/	A controlled vocabulary to support the study of transcription in the developing human brain	^\d+$	10153				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo		False																					
-dicom	DICOM Controlled Terminology	http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html	DICOM Controlled Terminology	^\d+$	109082	dclunie@dclunie.com					False				DCM									dicom								
-dictybase	dictyBase	http://dictybase.org	A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics		DDB0191090		http://dictybase.org/gene/$1			dictyBase	False			dictyBase													dictybase	dictyBase				
-dictybase.est	dictyBase Expressed Sequence Tag	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.	^DDB\d+$	DDB0016567		http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1				False			DICTYBASE.EST							dictybase.est	dictybase.est								dictybase		
-dictybase.gene	Dictybase Gene	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.	^DDB_G\d+$	DDB_G0267522		http://dictybase.org/gene/$1				False			DICTYBASE.GENE							dictybase.gene	dictybase.gene								dictybase		
-did	Decentralized Identifier	https://w3c-ccg.github.io/did-spec/	DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary.	^[a-z0-9]+:[A-Za-z0-9.\-:]+$	sov:WRfXPg8dantKVubE3HX8pw		https://uniresolver.io/#did:$1				False										did	did										
-dideo	Drug-drug Interaction and Drug-drug Interaction Evidence Ontology	https://github.com/DIDEO/DIDEO	The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology	^\d{8}$	00000180	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/DIDEO_$1				False	DIDEO		DIDEO	DIDEO								dideo	dideo	DIDEO							
-dinto	The Drug-Drug Interactions Ontology	http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto	A formal represention for drug-drug interactions knowledge.			maria.herrero@kcl.ac.uk	http://purl.obolibrary.org/obo/DINTO_$1				True	DINTO		DINTO	DINTO								dinto		DINTO							
-dip	Database of Interacting Proteins	https://dip.doe-mbi.ucla.edu/	The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions	^DIP(\:)?\-\d{1,}[ENXS]$	DIP-743N		https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1				False			DIP						2616	dip	dip					dip	DIP				
-discoverx	DiscoverX cell line products	https://www.discoverx.com/products-applications/cell-lines	Cell line collections		95-0166C6		https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact				False					DiscoverX																
-disdriv	Disease Drivers Ontology	http://www.disease-ontology.org	Drivers of human diseases including environmental, maternal and social exposures.	^\d+$	0000000	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/DISDRIV_$1				False	DISDRIV			DISDRIV								disdriv	disdriv								
-diseaseclass	Disease Class		Legacy disease classes that later became MONDO	^\d{7}$	0000598				https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo		True																					
-diseasesdb	Diseases Database	http://www.diseasesdatabase.com/	The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.	^\d+$	1784						False																		P557			
-disprot	DisProt	https://disprot.org/	DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}$	DP00003		https://disprot.org/$1				False			DISPROT						2723	disprot	disprot					disprot	DisProt				
-disprot.region	DisProt region	https://www.disprot.org	DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}r\d{3}$	DP00086r013		https://www.disprot.org/$1				False										disprot.region											
-dlxb	Linear double stranded DNA sequences	https://doulix.com	DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences.	^[A-Z0-9]{6,7}$	6VDC956		https://doulix.com/biomodules/$1				False										dlxb									dlx		
-dlxc	Circular double stranded DNA sequences composed	https://doulix.com	DOULIX lab-tested standard biological parts, in this case, full length constructs.	^[A-Z0-9]{6,7}$	M77F7JM		https://doulix.com/constructs/$1				False										dlxc									dlx		
-dmba	Developing Mouse Brain Atlas	https://developingmouse.brain-map.org/	A controlled vocabulary to support the study of transcription in the developing mouse brain	^\d+$	688				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo		False																					
-doco	Document Components Ontology	http://www.sparontologies.net/ontologies/doco	An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).		Paragraph		http://purl.org/spar/doco/$1				False																					
-doi	Digital Object Identifier	https://www.doi.org/	The Digital Object Identifier System is for identifying content objects in the digital environment.	^(doi\:)?\d{2}\.\d{4}.*$	10.1101/2022.07.08.499378		https://doi.org/$1				False			DOI		DOI				1188	doi	doi					doi					
-doid	Human Disease Ontology	http://www.disease-ontology.org	The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.	^\d+$	0110974	lynn.schriml@gmail.com	https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:$1		https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo	do	False	DOID		DOID	DOID						doid	doid	doid	doid	DOID		do		P699			
-dommino	Database of Macromolecular Interactions	http://korkinlab.org/dommino	DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides.	^[0-9][A-Za-z0-9]{3}$	2GC4		http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1				False			DOMMINO							dommino	dommino										
-door	Database for Prokaryotic Operons	http://csbl.bmb.uga.edu/DOOR/operon.php	DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.	^\d+$	1398574		http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1				False			DOOR							door	door					door					
-doqcs.model	Database of Quantitative Cellular Signaling: Model	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.	^\d+$	57		http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1				False			DOQCS.MODEL							doqcs.model	doqcs.model					doqcs.model			doqcs		
-doqcs.pathway	Database of Quantitative Cellular Signaling: Pathway	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.	^\d+$	131		http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1				False			DOQCS.PATHWAY							doqcs.pathway	doqcs.pathway					doqcs.pathway			doqcs		
-dpo	Drosophila Phenotype Ontology	http://purl.obolibrary.org/obo/fbcv	An ontology for the description of Drosophila melanogaster phenotypes.			cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1				False	DPO			DPO								dpo	dpo	DPO					fbcv		
-dpv	Description of Plant Viruses	http://www.dpvweb.net/	Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.	^\d+$	100		http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1				False			DPV							dpv	dpv										
-dragondb.allele	DragonDB Allele	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.	^\w+$	cho		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Allele				True			DRAGONDB.ALLELE							dragondb.allele	dragondb.allele								dragondb		
-dragondb.dna	DragonDB DNA	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.	^\d\w+$	3hB06		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA				True			DRAGONDB.DNA							dragondb.dna	dragondb.dna								dragondb		
-dragondb.locus	DragonDB Locus	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.	^\w+$	DEF		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Locus				True			DRAGONDB.LOCUS							dragondb.locus	dragondb.locus								dragondb		
-dragondb.protein	DragonDB Protein	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.	^\w+$	AMDEFA		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide				True			DRAGONDB.PROTEIN							dragondb.protein	dragondb.protein								dragondb		
-dron	The Drug Ontology	https://github.com/ufbmi/dron	We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive).	^\d{8}$	00023232	hoganwr@gmail.com	http://purl.obolibrary.org/obo/DRON_$1				False	DRON		DRON	DRON								dron	dron	DRON							
-drsc	Drosophila RNAi Screening Center	http://flyrnai.org/	The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.	^DRSC\d+$	DRSC05221		http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1				False			DRSC							drsc	drsc										
-drugbank	DrugBank	http://www.drugbank.ca	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.	^DB\d{5}$	DB14938		http://www.drugbank.ca/drugs/$1			DRUGBANK_ID|DrugBank	False			DrugBank		DrugBank	000406			2326	drugbank	drugbank					drugbank	DrugBank	P715			
-drugbank.category	DrugBank Drug Category	https://go.drugbank.com/categories	Close to 5K Categorizations for drugs, similar to ATCC.	^DBCAT\d+$	DBCAT000600		https://www.drugbank.ca/categories/$1				False																			drugbank		
-drugbank.salt	DrugBank Salts	http://www.drugbank.ca	DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.	^DBSALT\d{6}$	DBSALT001211		https://go.drugbank.com/salts/$1			drugbank.target	False			DRUGBANK.TARGET																drugbank		
-drugbankv4.target	DrugBank Target v4	http://www.drugbank.ca/targets	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.	^BE\d{7}$	BE0000048		http://www.drugbank.ca/biodb/bio_entities/$1				False			DRUGBANKV4.TARGET							drugbankv4.target	drugbankv4.target								drugbank		
-drugcentral	Drug Central	http://drugcentral.org	DrugCentral  provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action.	^\d+$	307		http://drugcentral.org/drugcard/$1			Drug_Central	False																	DrugCentral				
-dsmz	Deutsche Sammlung von Mikroorganismen und Zellkulturen	https://www.dsmz.de	The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines).		ACC-1		https://www.dsmz.de/collection/catalogue/details/culture/$1				False					DSMZ																
-dto	Drug Target Ontology	https://github.com/DrugTargetOntology/DTO	DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors.	^\d+$	90000018						False	DTO			DTO																	
-duo	Data Use Ontology	https://github.com/EBISPOT/DUO	DUO is an ontology which represent data use conditions.	^\d{7}$	0000046	mcourtot@gmail.com	http://purl.obolibrary.org/obo/DUO_$1				False	DUO		DUO	DUO								duo	duo	DUO							
-eaglei	eagle-i	https://hawaii.eagle-i.net	Discovery tool for biomedical research resources available at institutions throughout the U.S.		0000012b-5661-2f63-2f73-b43980000000		http://hawaii.eagle-i.net/i/$1				False					eagle-i																
-easychair.cfp	EasyChair Call for Paper	https://easychair.org/cfp/	Conferences in EasyChair		SysBioCancer2022		https://easychair.org/cfp/$1				False																					
-easychair.topic	EasyChair Topic	https://easychair.org/cfp/	Call for paper topics in EasyChair	^\d+$	27106865		https://easychair.org/cfp/topic.cgi?tid=$1				False																					
-ebisc	European Bank for induced pluripotent Stem Cells	https://www.ebisc.org	Cell line collections		ESi007-A		https://cells.ebisc.org/$1				False					EBiSC																
-ecacc	European Collection of Authenticated Cell Culture	https://www.phe-culturecollections.org.uk/collections/ecacc.aspx	The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).	^\d+$	90062901		https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1				False					ECACC																
-ecao	The Echinoderm Anatomy and Development Ontology	https://github.com/echinoderm-ontology/ecao_ontology	None	^\d{7}$	0107180	ettensohn@cmu.edu	http://purl.obolibrary.org/obo/ECAO_$1				False	ECAO			ECAO								ecao	ecao	ECAO							
-eccode	Enzyme Commission Code	https://www.ebi.ac.uk/intenz/	The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.	^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$	1.1.1.1		https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1			EC|EC number|EC-CODE|ECCODE|EC_CODE|ec-code|intenz	False			EC-CODE						1011	ec-code	ec-code					intenz		P591			
-ecg	Electrocardiogram Ontology	https://bioportal.bioontology.org/ontologies/ECG	The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.	^\d+$	000000159					ECGOntology	False	ECG			ECG																	
-echobase	EchoBASE post-genomic database for Escherichia coli	http://www.york.ac.uk/	EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.	^EB\d+$	EB0170		http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1				False			ECHOBASE							echobase	echobase					echobase	EchoBASE				
-ecmdb	E. coli Metabolite Database	https://ecmdb.ca	The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.	^ECMDB\d+$	ECMDB00005		http://ecmdb.ca/compounds/$1			ECMDB	False																					
-eco	Evidence ontology	https://github.com/evidenceontology/evidenceontology/	Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.	^\d{7}$	0007807	mgiglio@som.umaryland.edu	https://www.ebi.ac.uk/ols/ontologies/eco/terms?obo_id=ECO:$1				False	ECO		ECO	ECO						eco	eco	eco	eco	ECO		eco					
-ecocore	An ontology of core ecological entities	https://github.com/EcologicalSemantics/ecocore	Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.	^\d+$	00000001	p.buttigieg@gmail.com	http://purl.obolibrary.org/obo/ECOCORE_$1				False	ECOCORE		ECOCORE	ECOCORE								ecocore	ecocore	ECOCORE							
-ecocyc	EcoCyc	http://ecocyc.org/	EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.		AICARTRANSIMPCYCLO-CPLX		https://biocyc.org/gene?id=$1				False																					
-ecogene	Database of Escherichia coli Sequence and Function	http://ecogene.org/	The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.	^EG\d+$	EG10173		http://www.ecogene.org/gene/$1				False			EcoGene							ecogene	ecogene					ecogene					
-ecolexicon	EcoLexicon	http://ecolexicon.ugr.es/en/index.htm	EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology.		canal						False																					
-ecoliwiki	EcoliWiki from EcoliHub	http://ecoliwiki.net/colipedia/	EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.	^[A-Za-z0-9-]+$	aaeA		http://ecoliwiki.net/colipedia/index.php/$1:Gene				False			ECOLIWIKI							ecoliwiki	ecoliwiki										
-ecto	Environmental conditions, treatments and exposures ontology	https://github.com/EnvironmentOntology/environmental-exposure-ontology	ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).	^\d{7}$	0000001	annethessen@gmail.com	http://purl.obolibrary.org/obo/ECTO_$1				False	ECTO			ECTO								ecto	ecto	ECTO							
-ecyano.entity	E-cyanobacterium entity	http://www.e-cyanobacterium.org/bcs/entity/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.	^\d+$	23		https://www.e-cyanobacterium.org/bcs/entity/$1				False			ECYANO.ENTITY							ecyano.entity	ecyano.entity								ecyano		
-ecyano.experiment	E-cyanobacterium Experimental Data	https://www.e-cyanobacterium.org/experiments-repository/	E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.	^\d+$	18		https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1				False										ecyano.experiment									ecyano		
-ecyano.model	E-cyanobacterium model	http://e-cyanobacterium.org/models/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.	^\d+$	26		https://e-cyanobacterium.org/models/model/$1				False			ECYANO.MODEL							ecyano.model	ecyano.model										
-ecyano.rule	E-cyanobacterium rule	http://www.e-cyanobacterium.org/bcs/rule/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.	^\d+$	56		https://e-cyanobacterium.org/bcs/rule/$1				False			ECYANO.RULE							ecyano.rule	ecyano.rule								ecyano		
-edam	Bioinformatics operations, data types, formats, identifiers and topics	http://edamontology.org	EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).	^(data|topic|operation|format)\_\d{4}$	data_1664	matus.kalas@uib.no	https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False	EDAM	EDAM	EDAM	EDAM						edam	edam		edam	EDAM		edam					
-edam.data	EDAM Data	http://edamontology.org	Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.	^\d+$	1664	matus.kalas@uib.no	http://edamontology.org/data_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																			edam		
-edam.format	EDAM Format	http://edamontology.org	A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.	^\d+$	1915	matus.kalas@uib.no	http://edamontology.org/format_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																			edam		
-edam.operation	EDAM Operation	http://edamontology.org	A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.	^\d+$	0004	matus.kalas@uib.no	http://edamontology.org/operation_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																			edam		
-edam.topic	EDAM Topic	http://edamontology.org	A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.	^\d+$	0003	matus.kalas@uib.no	http://edamontology.org/topic_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																			edam		
-edda	EDDA Study Designs Taxonomy	https://bioportal.bioontology.org/ontologies/EDDA	Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.		health_care_quality_assessment						False	EDDA			EDDA																	
-efo	Experimental Factor Ontology	http://www.ebi.ac.uk/efo	The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.	^\d{7}$	0005147	plwhetzel@gmail.com	http://www.ebi.ac.uk/efo/EFO_$1		http://www.ebi.ac.uk/efo/efo.obo		False	EFO	EFO	EFO	EFO	EFO					efo	efo		efo	EFO							
-ega.dataset	European Genome-phenome Archive Dataset	https://ega-archive.org/	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.	^EGAD\d{11}$	EGAD00000000001		https://www.ebi.ac.uk/ega/datasets/$1				False			EGA.DATASET							ega.dataset	ega.dataset										
-ega.study	European Genome-phenome Archive Study	https://www.ebi.ac.uk/ega/studies	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.	^EGAS\d{11}$	EGAS00000000001		https://www.ebi.ac.uk/ega/studies/$1				False			EGA.STUDY							ega.study	ega.study										
-eggnog	eggNOG	http://eggnog.embl.de/version_3.0/	eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).	^\w+$	veNOG12876		http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1				False			EGGNOG							eggnog	eggnog					eggnog	eggNOG				
-ehda	Human developmental anatomy, timed version	http://genex.hgu.mrc.ac.uk/		^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDA_$1				True	EHDA		EHDA	EHDA								ehda				ehda					
-ehdaa	Human developmental anatomy, abstract version			^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA_$1				True	EHDAA		EHDAA	EHDAA								ehdaa				ehdaa					
-ehdaa2	Human developmental anatomy, abstract	https://github.com/obophenotype/human-developmental-anatomy-ontology	A structured controlled vocabulary of stage-specific anatomical structures of the developing human.	^\d{7}$	0000000	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA2_$1			EHDAA2_RETIRED|HDAA2|RETIRED_EHDAA2	True	EHDAA2		EHDAA2	EHDAA2								ehdaa2	ehdaa2	EHDAA2							
-elm	Eukaryotic Linear Motif Resource	http://elm.eu.org/	Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.	^[A-Za-z_0-9]+$	CLV_MEL_PAP_1		http://elm.eu.org/elms/elmPages/$1.html				False			ELM							elm	elm						ELM				
-emap	Mouse gross anatomy and development, timed	http://emouseatlas.org	A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).	^\d+$	1	Terry.Hayamizu@jax.org	http://purl.obolibrary.org/obo/EMAP_$1				True			EMAP	EMAP								emap									
-emapa	Mouse Developmental Anatomy Ontology	http://www.informatics.jax.org/expression.shtml	An ontology for mouse anatomy covering embryonic development and postnatal stages.	^\d+$	26753	Terry.Hayamizu@jax.org	http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:$1			EMAPA_RETIRED	False	EMAPA		EMAPA	EMAPA								emapa	emapa	EMAPA							
-emdb	Electron Microscopy Data Bank	https://www.ebi.ac.uk/pdbe/emdb/	The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.	^EMD-\d{4}$	EMD-1001		https://www.ebi.ac.uk/pdbe/entry/emdb/$1				False			EMDB						1146	emdb	emdb										
-emolecules	Reaxys eMolecules	https://reaxys.emolecules.com	Catalog of purchasable reagents and building blocks	^\d+$	491187		https://reaxys.emolecules.com/cgi-bin/more?vid=$1				False																					
-empiar	Electron Microscopy Public Image Archive	https://www.ebi.ac.uk/pdbe/emdb	EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure	^\d+$	10595		https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1				False																					
-ena.embl	European Nucleotide Archive	https://www.ebi.ac.uk/ena/	The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.	^[A-Z]+[0-9]+(\.\d+)?$	BN000065		https://www.ebi.ac.uk/ena/browser/view/$1			ena	False			ENA.EMBL							ena.embl	ena.embl					ena					
-encode	Encyclopedia of DNA Elements	https://www.encodeproject.org	The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.	^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$	ENCSR163RYW		https://www.encodeproject.org/$1				False			ENCODE		ENCODE					encode	encode										
-enm	eNanoMapper Ontology	http://www.enanomapper.net/	The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. 	^\d+$	8000221						False	ENM			ENM									enm								
-ensembl	Ensembl Gene	https://www.ensembl.org/	Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.	^((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$	ENSG00000139618		https://www.ensembl.org/id/$1			Ensembl	False			ENSEMBL						2610	ensembl	ensembl					ensembl	Ensembl	P594			
-ensembl.bacteria	Ensembl Bacteria	https://bacteria.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.	^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$	MU9_3181		https://bacteria.ensembl.org/id/$1				False			ENSEMBL.BACTERIA							ensembl.bacteria	ensembl.bacteria					ensembl.bacteria	EnsemblBacteria				
-ensembl.fungi	Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.	https://fungi.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.	^[A-Z-a-z0-9]+$	CADAFLAT00006211		https://fungi.ensembl.org/id/$1				False			ENSEMBL.FUNGI							ensembl.fungi	ensembl.fungi					ensembl.fungi	EnsemblFungi				
-ensembl.metazoa	Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa.	https://metazoa.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.	^\w+(\.)?\d+$	FBtr0084214		https://metazoa.ensembl.org/id/$1				False			ENSEMBL.METAZOA							ensembl.metazoa	ensembl.metazoa					ensembl.metazoa	EnsemblMetazoa				
-ensembl.plant	Ensembl Plants	https://plants.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.	^\w+(\.\d+)?(\.\d+)?$	AT1G73965		https://plants.ensembl.org/id/$1				False			ENSEMBL.PLANT							ensembl.plant	ensembl.plant					ensembl.plant					
-ensembl.protist	Ensembl Protists	https://protists.ensembl.org	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes.	^\w+$	PF3D7_1328700		https://protists.ensembl.org/id/$1				False			ENSEMBL.PROTIST							ensembl.protist	ensembl.protist					ensembl.protist					
-ensemblglossary	Ensembl Glossary	http://ensembl.org/glossary	The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.	^\d{7}$	0000198						False													ensemblglossary								
-envipath	enviPath	https://envipath.org/	enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.	^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$	32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea		https://envipath.org/package/$1				False										envipath											
-envo	Environment Ontology	http://environmentontology.org/	The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations.	^\d{7,8}$	09200010	p.buttigieg@gmail.com	https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:$1				False	ENVO	ENVO	ENVO	ENVO						envo	envo	envo	envo	ENVO							
-enzo	Enzo Life Sciences	https://www.enzolifesciences.com	Enzo Life Sciences is an antibody vendor.		ALX-210-175		https://www.enzolifesciences.com/$1			Enzo Life Sciences	False																					
-eo	Plant Environment Ontology	http://planteome.org/	The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.	^\d{7}$	0007404	jaiswalp@science.oregonstate.edu	http://archive.gramene.org/db/ontology/search?query=EO:$1				True	EO	EO	EO							eo	eo	eo				eo					
-eol	Environment Ontology for Livestock	http://www.atol-ontology.com	The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.	^\d{7}$	0001927	pylebail@rennes.inra.fr		https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=eol.owl			False	EOL	EOL		EOL									eol								
-eolife	Encyclopedia of Life	https://eol.org	A collaborative project intended to create an encyclopedia documenting all living species known to science	^\d+$	1044544		https://eol.org/pages/$1				False																		P830			
-epcc	European Paediatric Cardiac Codes	https://www.aepc.org/european-paediatric-cardiac-coding	Collection of European paediatric cardiac coding files								False																					
-epd	Eukaryotic Promoter Database	http://epd.vital-it.ch/	The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.	^[A-Z-_0-9]+$	TA_H3		http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$1				False			EPD						2386	epd	epd						EPD				
-epio	Epilepsy Ontology	https://github.com/SCAI-BIO/EpilepsyOntology	A application driven Epilepsy Ontology with official terms from the ILAE.	^\d{7}$	0000011	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/EPIO_$1				False	EPIO			EPIO								epio		EPIO							
-epo	Epidemiology Ontology	https://code.google.com/p/epidemiology-ontology/	An ontology designed to support the semantic annotation of epidemiology resources				http://purl.obolibrary.org/obo/EPO_$1	https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/epidemiology-ontology/epo.owl			True	EPO		EPO	EPO								epo		EPO							
-epso	Epilepsy and Seizure Ontology	http://prism.case.edu/prism/index.php/EpilepsyOntology	The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. 	^\d{7}$	0000400						False	EPSO			EPSO										EPSO							
-erm	European Registry of Materials	https://nanocommons.github.io/identifiers/	The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project.	^ERM[0-9]{8}$	ERM00000044		https://nanocommons.github.io/identifiers/registry#$1				False										erm	erm										
-ero	eagle-i resource ontology	https://open.med.harvard.edu/wiki/display/eaglei/Ontology	An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.	^\d{7}$	0001655	Marc_Ciriello@hms.harvard.edu	http://purl.obolibrary.org/obo/ERO_$1				True	ERO		ERO	ERO								ero	ero	ERO							
-erv	Human Endogenous Retrovirus Database	https://herv.img.cas.cz/	Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.	^[A-Za-z0-9\-\_]+$	THE1B		https://herv.img.cas.cz/s/$1				False			ERV							erv	erv										
-estdab	European Searchable Tumour Line Database	https://www.ebi.ac.uk/ipd/estdab/	Cell line databases/resources	^\d{3}$	046		https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1				True					ESTDAB																
-eu89h	JRC Data Catalogue	http://data.jrc.ec.europa.eu/	The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.	^[a-z0-9\-_]+$	jrc-eurl-ecvam-chemagora		http://data.europa.eu/89h/$1				False			EU89H							eu89h	eu89h										
+These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."	^\d{6}(\/\d+\.\d+\.\d+)?$	000017		https://dandiarchive.org/dandiset/$1				False										dandi							r3d100013638					
+darc	Database of Aligned Ribosomal Complexes	http://darcsite.genzentrum.lmu.de/darc/index.php	DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors.	^\d+$	1250		http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1				False			DARC							darc	darc											
+dashr	Database of small human noncoding RNAs	http://lisanwanglab.org/DASHR/	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a		http://lisanwanglab.org/DASHR/entry/$1				False			DASHR							dashr	dashr											
+dashr.expression	DASHR expression	https://dashr1.lisanwanglab.org/show-expression-table.php?start=0	DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.	^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$	hsa-mir-200a		https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable				False			DASHR.EXPRESSION							dashr.expression	dashr.expression											
+datacite	DataCite Ontology	http://www.sparontologies.net/ontologies/datacite	An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.		AgentIdentifierScheme		http://purl.org/spar/datacite/$1				False	DATACITE			DATACITE																		
+datanator.gene	Datanator Gene	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^K[0-9]+$	K00973		https://www.datanator.info/gene/$1				False										datanator.gene										datanator		
+datanator.metabolite	Datanator Metabolite	https://datanator.info/	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.	^[A-Z\-]+$	OUYCCCASQSFEME-MRVPVSSYSA-N		https://www.datanator.info/metabolite/$1				False										datanator.metabolite										datanator		
+datanator.reaction	Datanator Reaction	https://icahn.mssm.edu/	"	Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."	^.*?--%3E.*?$	XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N		https://datanator.info/reaction/$1				False										datanator.reaction												
+datf	Database of Arabidopsis Transcription Factors	http://datf.cbi.pku.edu.cn/	DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.	^AT[1-5]G\d{5}(\.\d+)?$	AT1G01030.1		http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1				True			DATF							datf	datf					datf						
+dbd	Transcription Factor Database	http://www.transcriptionfactor.org/	The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.	^\d+$	0045310		http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD				False			DBD						2716	dbd	dbd					dbd						
+dbest	EST database maintained at the NCBI.	https://www.ncbi.nlm.nih.gov/nucest	"The dbEST contains sequence data and other information on ""single-pass"" cDNA sequences, or ""Expressed Sequence Tags"", from a number of organisms."	^([A-Z]+)?\d+(\.\d+)?$	BP100000		https://www.ncbi.nlm.nih.gov/nucest/$1				False			DBEST						1105	dbest	dbest					dbest						
+dbg2introns	DBG2 Introns	http://webapps2.ucalgary.ca/~groupii/	The Database for Bacterial Group II Introns  provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.	^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$	Cu.me.I1		http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1				False			DBG2INTRONS							dbg2introns	dbg2introns											
+dbgap	Database of Genotypes and Phenotypes	https://www.ncbi.nlm.nih.gov/projects/gap	The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.	^phs[0-9]{6}(.v\d+.p\d+)?$	phs000768.v2.p1		https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1				False			DBGAP							dbgap	dbgap											
+dbmhc	Database of human Major Histocompatibility Complex	https://www.ncbi.nlm.nih.gov/gv/mhc/	Cell line databases/resources	^\d+$	48439						True					dbMHC																	
+dbprobe	NCBI Probe database Public registry of nucleic acid reagents	https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe	The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.	^\d+$	1000000		https://www.ncbi.nlm.nih.gov/probe/?term=$1				False			DBPROBE						2719	dbprobe	dbprobe					dbprobe						
+dbsnp	NCBI dbSNP	https://www.ncbi.nlm.nih.gov/snp/	The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.	^rs\d+$	rs121909098		https://www.ncbi.nlm.nih.gov/snp/$1				False			dbSNP		dbSNP				1106	dbsnp	dbsnp					dbsnp	r3d100010652	dbSNP				
+dbvar.study	Database of Genomic Structural Variation - Study	https://www.ncbi.nlm.nih.gov/dbvar	Studies in dbVar.		nstd102		https://www.ncbi.nlm.nih.gov/dbvar/studies/$1			dbvar.studies	False																						
+dbvar.variant	Database of Genomic Structural Variation - Variant	https://www.ncbi.nlm.nih.gov/dbvar	Variants in dbVar.		nsv3875336		https://www.ncbi.nlm.nih.gov/dbvar/variants/$1			dbvar.variants	False																						
+dc	Dublin Core	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		contributor		http://purl.org/dc/terms/$1				False	DC		dc	DC																		dcterms
+dc_cl	Dendritic cell	http://www.dukeontologygroup.org/Projects.html		^\d{7}$	0000003	Lindsay.Cowell@utsouthwestern.edu	http://purl.obolibrary.org/obo/DC_CL_$1				True			DC_CL									dc_cl										
+dcat	Data Catalog	https://www.w3.org/ns/dcat	DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web		Dataset		http://www.w3.org/ns/dcat#$1				False	DCAT		dcat	DCAT																		
+dcterms	Dublin Core Metadata Vocabulary	https://www.dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		title		http://purl.org/dc/terms/$1			dc.terms	False	dcterms		dcterms	DCTERMS																		
+dctypes	Dublin Core Types	https://dublincore.org/specifications/dublin-core/dcmi-terms/	This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.		Collection		http://purl.org/dc/dcmitype/$1				False			dctypes																			
+ddanat	Dictyostelium discoideum anatomy	http://dictybase.org/	A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum	^\d{7}$	0000006	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDANAT_$1				False	DDANAT		DDANAT	DDANAT								ddanat	ddanat	DDANAT		ddanat						
+ddpheno	Dictyostelium discoideum phenotype ontology	http://dictybase.org/	A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.	^\d{7}$	0001417	pfey@northwestern.edu	http://purl.obolibrary.org/obo/DDPHENO_$1		https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo		False	DDPHENO		DDPHENO	DDPHENO								ddpheno	ddpheno	DDPHENO								
+debio	Decentralized Biomedical Ontology	https://biopragmatics.github.io/debio	A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.	^\d{7}$	0000001	cthoyt@gmail.com	https://biopragmatics.github.io/debio/$1				False																						
+decipher	DECIPHER CNV Syndromes	https://www.deciphergenomics.org/	CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms	^\d+$	1		https://www.deciphergenomics.org/syndrome/$1				False			DECIPHER																			
+degradome	Degradome Database	http://degradome.uniovi.es/	The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.	^[AMCST][0-9x][0-9]$	Ax1		http://degradome.uniovi.es/cgi-bin/protease/$1				False			DEGRADOME							degradome	degradome											
+deo	Discourse Elements Ontology	http://www.sparontologies.net/ontologies/deo	An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO.		Reference		http://purl.org/spar/deo/$1				False																						
+depmap	DepMap Cell Lines	https://depmap.org/portal	Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.	^ACH-\d+$	ACH-000001		https://depmap.org/portal/cell_line/$1				False					DepMap																	
+depod	Human Dephosphorylation Database	http://www.depod.bioss.uni-freiburg.de	The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.	^[A-Z0-9]+$	PTPN1		http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1				False			DEPOD							depod	depod						r3d100011936	DEPOD			hgnc.symbol	
+dermo	Human Dermatological Disease Ontology	https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x	DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders	^\d{7}$	0000000						False	DERMO			DERMO																		
+dev.ga4ghdos	Development Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#\.]+$	23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00		https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1				False			DEV.GA4GHDOS							dev.ga4ghdos	dev.ga4ghdos											
+dg.4503	BioData Catalyst	https://gen3.biodatacatalyst.nhlbi.nih.gov	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	0000ffeb-36e0-4a29-b21d-84423bda979d		https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1				False										dg.4503												
+dg.4dfc	NCI Data Commons Framework Services	https://nci-crdc.datacommons.io/	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	81944ba1-81d0-436e-8552-33d77a27834b		https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1				False										dg.4dfc												
+dg.6vts	JCOIN	https://jcoin.datacommons.io	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	2afacf00-9a1d-4d80-8c32-69d3923d3913		https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1				False										dg.6vts												
+dg.anv0	Anvil	https://gen3.theanvil.io	DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$	00077f1c-c45a-47ba-8e6c-1bf6b6b43fce		https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1				False										dg.anv0												
+dg.f82a1a	Kids First	https://kidsfirstdrc.org	Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00026f50-858a-446b-8ed9-b0e3ecd7b20e		https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1				False										dg.f82a1a												
+dg5b0d	BloodPAC	https://data.bloodpac.org/.	The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.	^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$	00000d53-99bc-4d3e-8ed7-6dc358baccb7		https://data.bloodpac.org/ga4gh/drs/v1/objects/$1				False										dg.5b0d												
+dgrc	Drosophila Genomics Resource Center	https://dgrc.bio.indiana.edu/cells/Catalog	Cell line collections	^\d+$	215		https://dgrc.bio.indiana.edu/product/View?product=$1				False					DGRC																	
+dhba	Developing Human Brain Atlas	https://www.brainspan.org/	A controlled vocabulary to support the study of transcription in the developing human brain	^\d+$	10153				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo		False																						
+dicom	DICOM Controlled Terminology	http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html	DICOM Controlled Terminology	^\d+$	109082	dclunie@dclunie.com					False				DCM									dicom									
+dictybase	dictyBase	http://dictybase.org	A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics		DDB0191090		http://dictybase.org/gene/$1			dictyBase	False			dictyBase													dictybase	r3d100010586	dictyBase				
+dictybase.est	dictyBase Expressed Sequence Tag	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.	^DDB\d+$	DDB0016567		http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1				False			DICTYBASE.EST							dictybase.est	dictybase.est									dictybase		
+dictybase.gene	Dictybase Gene	http://dictybase.org/	The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.	^DDB_G\d+$	DDB_G0267522		http://dictybase.org/gene/$1				False			DICTYBASE.GENE							dictybase.gene	dictybase.gene									dictybase		
+did	Decentralized Identifier	https://w3c-ccg.github.io/did-spec/	DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary.	^[a-z0-9]+:[A-Za-z0-9.\-:]+$	sov:WRfXPg8dantKVubE3HX8pw		https://uniresolver.io/#did:$1				False										did	did											
+dideo	Drug-drug Interaction and Drug-drug Interaction Evidence Ontology	https://github.com/DIDEO/DIDEO	The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology	^\d{8}$	00000180	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/DIDEO_$1				False	DIDEO		DIDEO	DIDEO								dideo	dideo	DIDEO								
+dinto	The Drug-Drug Interactions Ontology	http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto	A formal represention for drug-drug interactions knowledge.			maria.herrero@kcl.ac.uk	http://purl.obolibrary.org/obo/DINTO_$1				True	DINTO		DINTO	DINTO								dinto		DINTO								
+dip	Database of Interacting Proteins	https://dip.doe-mbi.ucla.edu/	The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions	^DIP(\:)?\-\d{1,}[ENXS]$	DIP-743N		https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1				False			DIP						2616	dip	dip					dip		DIP				
+discoverx	DiscoverX cell line products	https://www.discoverx.com/products-applications/cell-lines	Cell line collections		95-0166C6		https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact				False					DiscoverX																	
+disdriv	Disease Drivers Ontology	http://www.disease-ontology.org	Drivers of human diseases including environmental, maternal and social exposures.	^\d+$	0000000	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/DISDRIV_$1				False	DISDRIV			DISDRIV								disdriv	disdriv									
+diseaseclass	Disease Class		Legacy disease classes that later became MONDO	^\d{7}$	0000598				https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo		True																						
+diseasesdb	Diseases Database	http://www.diseasesdatabase.com/	The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.	^\d+$	1784						False																			P557			
+disprot	DisProt	https://disprot.org/	DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}$	DP00003		https://disprot.org/$1				False			DISPROT						2723	disprot	disprot					disprot	r3d100010561	DisProt				
+disprot.region	DisProt region	https://www.disprot.org	DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature.	^DP\d{5}r\d{3}$	DP00086r013		https://www.disprot.org/$1				False										disprot.region												
+dlxb	Linear double stranded DNA sequences	https://doulix.com	DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences.	^[A-Z0-9]{6,7}$	6VDC956		https://doulix.com/biomodules/$1				False										dlxb										dlx		
+dlxc	Circular double stranded DNA sequences composed	https://doulix.com	DOULIX lab-tested standard biological parts, in this case, full length constructs.	^[A-Z0-9]{6,7}$	M77F7JM		https://doulix.com/constructs/$1				False										dlxc										dlx		
+dmba	Developing Mouse Brain Atlas	https://developingmouse.brain-map.org/	A controlled vocabulary to support the study of transcription in the developing mouse brain	^\d+$	688				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo		False																						
+doco	Document Components Ontology	http://www.sparontologies.net/ontologies/doco	An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).		Paragraph		http://purl.org/spar/doco/$1				False																						
+doi	Digital Object Identifier	https://www.doi.org/	The Digital Object Identifier System is for identifying content objects in the digital environment.	^(doi\:)?\d{2}\.\d{4}.*$	10.1101/2022.07.08.499378		https://doi.org/$1				False			DOI		DOI				1188	doi	doi					doi						
+doid	Human Disease Ontology	http://www.disease-ontology.org	The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.	^\d+$	0110974	lynn.schriml@gmail.com	https://www.ebi.ac.uk/ols/ontologies/doid/terms?obo_id=DOID:$1		https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo	do	False	DOID		DOID	DOID						doid	doid	doid	doid	DOID		do			P699			
+dommino	Database of Macromolecular Interactions	http://korkinlab.org/dommino	DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides.	^[0-9][A-Za-z0-9]{3}$	2GC4		http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1				False			DOMMINO							dommino	dommino											
+door	Database for Prokaryotic Operons	http://csbl.bmb.uga.edu/DOOR/operon.php	DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.	^\d+$	1398574		http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1				False			DOOR							door	door					door						
+doqcs.model	Database of Quantitative Cellular Signaling: Model	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.	^\d+$	57		http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1				False			DOQCS.MODEL							doqcs.model	doqcs.model					doqcs.model				doqcs		
+doqcs.pathway	Database of Quantitative Cellular Signaling: Pathway	http://doqcs.ncbs.res.in/	The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.	^\d+$	131		http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1				False			DOQCS.PATHWAY							doqcs.pathway	doqcs.pathway					doqcs.pathway				doqcs		
+dpo	Drosophila Phenotype Ontology	http://purl.obolibrary.org/obo/fbcv	An ontology for the description of Drosophila melanogaster phenotypes.			cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1				False	DPO			DPO								dpo	dpo	DPO						fbcv		
+dpv	Description of Plant Viruses	http://www.dpvweb.net/	Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.	^\d+$	100		http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1				False			DPV							dpv	dpv											
+dragondb.allele	DragonDB Allele	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.	^\w+$	cho		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Allele				True			DRAGONDB.ALLELE							dragondb.allele	dragondb.allele									dragondb		
+dragondb.dna	DragonDB DNA	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.	^\d\w+$	3hB06		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA				True			DRAGONDB.DNA							dragondb.dna	dragondb.dna									dragondb		
+dragondb.locus	DragonDB Locus	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.	^\w+$	DEF		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&amp;class=Locus				True			DRAGONDB.LOCUS							dragondb.locus	dragondb.locus									dragondb		
+dragondb.protein	DragonDB Protein	http://www.antirrhinum.net/	DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.	^\w+$	AMDEFA		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide				True			DRAGONDB.PROTEIN							dragondb.protein	dragondb.protein									dragondb		
+dron	The Drug Ontology	https://github.com/ufbmi/dron	We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive).	^\d{8}$	00023232	hoganwr@gmail.com	http://purl.obolibrary.org/obo/DRON_$1				False	DRON		DRON	DRON								dron	dron	DRON								
+drsc	Drosophila RNAi Screening Center	http://flyrnai.org/	The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides  information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.	^DRSC\d+$	DRSC05221		http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1				False			DRSC							drsc	drsc											
+drugbank	DrugBank	http://www.drugbank.ca	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.	^DB\d{5}$	DB14938		http://www.drugbank.ca/drugs/$1			DRUGBANK_ID|DrugBank	False			DrugBank		DrugBank	000406			2326	drugbank	drugbank					drugbank	r3d100010544	DrugBank	P715			
+drugbank.category	DrugBank Drug Category	https://go.drugbank.com/categories	Close to 5K Categorizations for drugs, similar to ATCC.	^DBCAT\d+$	DBCAT000600		https://www.drugbank.ca/categories/$1				False																				drugbank		
+drugbank.salt	DrugBank Salts	http://www.drugbank.ca	DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.	^DBSALT\d{6}$	DBSALT001211		https://go.drugbank.com/salts/$1			drugbank.target	False			DRUGBANK.TARGET																	drugbank		
+drugbankv4.target	DrugBank Target v4	http://www.drugbank.ca/targets	The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.	^BE\d{7}$	BE0000048		http://www.drugbank.ca/biodb/bio_entities/$1				False			DRUGBANKV4.TARGET							drugbankv4.target	drugbankv4.target									drugbank		
+drugcentral	Drug Central	http://drugcentral.org	DrugCentral  provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action.	^\d+$	307		http://drugcentral.org/drugcard/$1			Drug_Central	False																		DrugCentral				
+dsmz	Deutsche Sammlung von Mikroorganismen und Zellkulturen	https://www.dsmz.de	The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines).		ACC-1		https://www.dsmz.de/collection/catalogue/details/culture/$1				False					DSMZ												r3d100010219					
+dto	Drug Target Ontology	https://github.com/DrugTargetOntology/DTO	DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors.	^\d+$	90000018						False	DTO			DTO																		
+duo	Data Use Ontology	https://github.com/EBISPOT/DUO	DUO is an ontology which represent data use conditions.	^\d{7}$	0000046	mcourtot@gmail.com	http://purl.obolibrary.org/obo/DUO_$1				False	DUO		DUO	DUO								duo	duo	DUO								
+eaglei	eagle-i	https://hawaii.eagle-i.net	Discovery tool for biomedical research resources available at institutions throughout the U.S.		0000012b-5661-2f63-2f73-b43980000000		http://hawaii.eagle-i.net/i/$1				False					eagle-i												r3d100011564					
+easychair.cfp	EasyChair Call for Paper	https://easychair.org/cfp/	Conferences in EasyChair		SysBioCancer2022		https://easychair.org/cfp/$1				False																						
+easychair.topic	EasyChair Topic	https://easychair.org/cfp/	Call for paper topics in EasyChair	^\d+$	27106865		https://easychair.org/cfp/topic.cgi?tid=$1				False																						
+ebisc	European Bank for induced pluripotent Stem Cells	https://www.ebisc.org	Cell line collections		ESi007-A		https://cells.ebisc.org/$1				False					EBiSC																	
+ecacc	European Collection of Authenticated Cell Culture	https://www.phe-culturecollections.org.uk/collections/ecacc.aspx	The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).	^\d+$	90062901		https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1				False					ECACC																	
+ecao	The Echinoderm Anatomy and Development Ontology	https://github.com/echinoderm-ontology/ecao_ontology	None	^\d{7}$	0107180	ettensohn@cmu.edu	http://purl.obolibrary.org/obo/ECAO_$1				False	ECAO			ECAO								ecao	ecao	ECAO								
+eccode	Enzyme Commission Code	https://www.ebi.ac.uk/intenz/	The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.	^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$	1.1.1.1		https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1			EC|EC number|EC-CODE|ECCODE|EC_CODE|ec-code|intenz	False			EC-CODE						1011	ec-code	ec-code					intenz			P591			
+ecg	Electrocardiogram Ontology	https://bioportal.bioontology.org/ontologies/ECG	The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.	^\d+$	000000159					ECGOntology	False	ECG			ECG																		
+echobase	EchoBASE post-genomic database for Escherichia coli	http://www.york.ac.uk/	EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.	^EB\d+$	EB0170		http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1				False			ECHOBASE							echobase	echobase					echobase	r3d100011646	EchoBASE				
+ecmdb	E. coli Metabolite Database	https://ecmdb.ca	The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.	^ECMDB\d+$	ECMDB00005		http://ecmdb.ca/compounds/$1			ECMDB	False																						
+eco	Evidence ontology	https://github.com/evidenceontology/evidenceontology/	Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.	^\d{7}$	0007807	mgiglio@som.umaryland.edu	https://www.ebi.ac.uk/ols/ontologies/eco/terms?obo_id=ECO:$1				False	ECO		ECO	ECO						eco	eco	eco	eco	ECO		eco						
+ecocore	An ontology of core ecological entities	https://github.com/EcologicalSemantics/ecocore	Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.	^\d+$	00000001	p.buttigieg@gmail.com	http://purl.obolibrary.org/obo/ECOCORE_$1				False	ECOCORE		ECOCORE	ECOCORE								ecocore	ecocore	ECOCORE								
+ecocyc	EcoCyc	http://ecocyc.org/	EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.		AICARTRANSIMPCYCLO-CPLX		https://biocyc.org/gene?id=$1				False																						
+ecogene	Database of Escherichia coli Sequence and Function	http://ecogene.org/	The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.	^EG\d+$	EG10173		http://www.ecogene.org/gene/$1				False			EcoGene							ecogene	ecogene					ecogene	r3d100010546					
+ecolexicon	EcoLexicon	http://ecolexicon.ugr.es/en/index.htm	EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology.		canal						False																						
+ecoliwiki	EcoliWiki from EcoliHub	http://ecoliwiki.net/colipedia/	EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.	^[A-Za-z0-9-]+$	aaeA		http://ecoliwiki.net/colipedia/index.php/$1:Gene				False			ECOLIWIKI							ecoliwiki	ecoliwiki											
+ecto	Environmental conditions, treatments and exposures ontology	https://github.com/EnvironmentOntology/environmental-exposure-ontology	ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).	^\d{7}$	0000001	annethessen@gmail.com	http://purl.obolibrary.org/obo/ECTO_$1				False	ECTO			ECTO								ecto	ecto	ECTO								
+ecyano.entity	E-cyanobacterium entity	http://www.e-cyanobacterium.org/bcs/entity/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.	^\d+$	23		https://www.e-cyanobacterium.org/bcs/entity/$1				False			ECYANO.ENTITY							ecyano.entity	ecyano.entity									ecyano		
+ecyano.experiment	E-cyanobacterium Experimental Data	https://www.e-cyanobacterium.org/experiments-repository/	E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.	^\d+$	18		https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1				False										ecyano.experiment										ecyano		
+ecyano.model	E-cyanobacterium model	http://e-cyanobacterium.org/models/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.	^\d+$	26		https://e-cyanobacterium.org/models/model/$1				False			ECYANO.MODEL							ecyano.model	ecyano.model											
+ecyano.rule	E-cyanobacterium rule	http://www.e-cyanobacterium.org/bcs/rule/	E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.	^\d+$	56		https://e-cyanobacterium.org/bcs/rule/$1				False			ECYANO.RULE							ecyano.rule	ecyano.rule									ecyano		
+edam	Bioinformatics operations, data types, formats, identifiers and topics	http://edamontology.org	EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).	^(data|topic|operation|format)\_\d{4}$	data_1664	matus.kalas@uib.no	https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False	EDAM	EDAM	EDAM	EDAM						edam	edam		edam	EDAM		edam						
+edam.data	EDAM Data	http://edamontology.org	Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.	^\d+$	1664	matus.kalas@uib.no	http://edamontology.org/data_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																				edam		
+edam.format	EDAM Format	http://edamontology.org	A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.	^\d+$	1915	matus.kalas@uib.no	http://edamontology.org/format_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																				edam		
+edam.operation	EDAM Operation	http://edamontology.org	A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.	^\d+$	0004	matus.kalas@uib.no	http://edamontology.org/operation_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																				edam		
+edam.topic	EDAM Topic	http://edamontology.org	A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.	^\d+$	0003	matus.kalas@uib.no	http://edamontology.org/topic_$1		https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo		False																				edam		
+edda	EDDA Study Designs Taxonomy	https://bioportal.bioontology.org/ontologies/EDDA	Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.		health_care_quality_assessment						False	EDDA			EDDA																		
+efo	Experimental Factor Ontology	http://www.ebi.ac.uk/efo	The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.	^\d{7}$	0005147	plwhetzel@gmail.com	http://www.ebi.ac.uk/efo/EFO_$1		http://www.ebi.ac.uk/efo/efo.obo		False	EFO	EFO	EFO	EFO	EFO					efo	efo		efo	EFO								
+ega.dataset	European Genome-phenome Archive Dataset	https://ega-archive.org/	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.	^EGAD\d{11}$	EGAD00000000001		https://www.ebi.ac.uk/ega/datasets/$1				False			EGA.DATASET							ega.dataset	ega.dataset											
+ega.study	European Genome-phenome Archive Study	https://www.ebi.ac.uk/ega/studies	The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.	^EGAS\d{11}$	EGAS00000000001		https://www.ebi.ac.uk/ega/studies/$1				False			EGA.STUDY							ega.study	ega.study											
+eggnog	eggNOG	http://eggnog.embl.de/version_3.0/	eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).	^\w+$	veNOG12876		http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1				False			EGGNOG							eggnog	eggnog					eggnog		eggNOG				
+ehda	Human developmental anatomy, timed version	http://genex.hgu.mrc.ac.uk/		^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDA_$1				True	EHDA		EHDA	EHDA								ehda				ehda						
+ehdaa	Human developmental anatomy, abstract version			^\d+$	1	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA_$1				True	EHDAA		EHDAA	EHDAA								ehdaa				ehdaa						
+ehdaa2	Human developmental anatomy, abstract	https://github.com/obophenotype/human-developmental-anatomy-ontology	A structured controlled vocabulary of stage-specific anatomical structures of the developing human.	^\d{7}$	0000000	J.Bard@ed.ac.uk	http://purl.obolibrary.org/obo/EHDAA2_$1			EHDAA2_RETIRED|HDAA2|RETIRED_EHDAA2	True	EHDAA2		EHDAA2	EHDAA2								ehdaa2	ehdaa2	EHDAA2								
+elm	Eukaryotic Linear Motif Resource	http://elm.eu.org/	Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.	^[A-Za-z_0-9]+$	CLV_MEL_PAP_1		http://elm.eu.org/elms/elmPages/$1.html				False			ELM							elm	elm							ELM				
+emap	Mouse gross anatomy and development, timed	http://emouseatlas.org	A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).	^\d+$	1	Terry.Hayamizu@jax.org	http://purl.obolibrary.org/obo/EMAP_$1				True			EMAP	EMAP								emap										
+emapa	Mouse Developmental Anatomy Ontology	http://www.informatics.jax.org/expression.shtml	An ontology for mouse anatomy covering embryonic development and postnatal stages.	^\d+$	26753	Terry.Hayamizu@jax.org	http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:$1			EMAPA_RETIRED	False	EMAPA		EMAPA	EMAPA								emapa	emapa	EMAPA								
+emdb	Electron Microscopy Data Bank	https://www.ebi.ac.uk/pdbe/emdb/	The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.	^EMD-\d{4}$	EMD-1001		https://www.ebi.ac.uk/pdbe/entry/emdb/$1				False			EMDB						1146	emdb	emdb											
+emolecules	Reaxys eMolecules	https://reaxys.emolecules.com	Catalog of purchasable reagents and building blocks	^\d+$	491187		https://reaxys.emolecules.com/cgi-bin/more?vid=$1				False																						
+empiar	Electron Microscopy Public Image Archive	https://www.ebi.ac.uk/pdbe/emdb	EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure	^\d+$	10595		https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1				False																						
+ena.embl	European Nucleotide Archive	https://www.ebi.ac.uk/ena/	The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.	^[A-Z]+[0-9]+(\.\d+)?$	BN000065		https://www.ebi.ac.uk/ena/browser/view/$1			ena	False			ENA.EMBL							ena.embl	ena.embl					ena						
+encode	Encyclopedia of DNA Elements	https://www.encodeproject.org	The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.	^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$	ENCSR163RYW		https://www.encodeproject.org/$1				False			ENCODE		ENCODE					encode	encode						r3d100013051					
+enm	eNanoMapper Ontology	http://www.enanomapper.net/	The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. 	^\d+$	8000221						False	ENM			ENM									enm									
+ensembl	Ensembl Gene	https://www.ensembl.org/	Ensembl is a joint project between EMBL - EBI and the Sanger Institute  to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.	^((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$	ENSG00000139618		https://www.ensembl.org/id/$1			Ensembl	False			ENSEMBL						2610	ensembl	ensembl					ensembl	r3d100010228	Ensembl	P594			
+ensembl.bacteria	Ensembl Bacteria	https://bacteria.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.	^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$	MU9_3181		https://bacteria.ensembl.org/id/$1				False			ENSEMBL.BACTERIA							ensembl.bacteria	ensembl.bacteria					ensembl.bacteria	r3d100011195	EnsemblBacteria				
+ensembl.fungi	Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.	https://fungi.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.	^[A-Z-a-z0-9]+$	CADAFLAT00006211		https://fungi.ensembl.org/id/$1				False			ENSEMBL.FUNGI							ensembl.fungi	ensembl.fungi					ensembl.fungi	r3d100011196	EnsemblFungi				
+ensembl.metazoa	Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa.	https://metazoa.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.	^\w+(\.)?\d+$	FBtr0084214		https://metazoa.ensembl.org/id/$1				False			ENSEMBL.METAZOA							ensembl.metazoa	ensembl.metazoa					ensembl.metazoa	r3d100011198	EnsemblMetazoa				
+ensembl.plant	Ensembl Plants	https://plants.ensembl.org/	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.	^\w+(\.\d+)?(\.\d+)?$	AT1G73965		https://plants.ensembl.org/id/$1				False			ENSEMBL.PLANT							ensembl.plant	ensembl.plant					ensembl.plant						
+ensembl.protist	Ensembl Protists	https://protists.ensembl.org	Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes.	^\w+$	PF3D7_1328700		https://protists.ensembl.org/id/$1				False			ENSEMBL.PROTIST							ensembl.protist	ensembl.protist					ensembl.protist						
+ensemblglossary	Ensembl Glossary	http://ensembl.org/glossary	The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.	^\d{7}$	0000198						False													ensemblglossary									
+envipath	enviPath	https://envipath.org/	enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.	^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$	32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea		https://envipath.org/package/$1				False										envipath							r3d100012715					
+envo	Environment Ontology	http://environmentontology.org/	The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations.	^\d{7,8}$	09200010	p.buttigieg@gmail.com	https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:$1				False	ENVO	ENVO	ENVO	ENVO						envo	envo	envo	envo	ENVO								
+enzo	Enzo Life Sciences	https://www.enzolifesciences.com	Enzo Life Sciences is an antibody vendor.		ALX-210-175		https://www.enzolifesciences.com/$1			Enzo Life Sciences	False																						
+eo	Plant Environment Ontology	http://planteome.org/	The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.	^\d{7}$	0007404	jaiswalp@science.oregonstate.edu	http://archive.gramene.org/db/ontology/search?query=EO:$1				True	EO	EO	EO							eo	eo	eo				eo						
+eol	Environment Ontology for Livestock	http://www.atol-ontology.com	The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.	^\d{7}$	0001927	pylebail@rennes.inra.fr		https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=eol.owl			False	EOL	EOL		EOL									eol				r3d100011663					
+eolife	Encyclopedia of Life	https://eol.org	A collaborative project intended to create an encyclopedia documenting all living species known to science	^\d+$	1044544		https://eol.org/pages/$1				False																			P830			
+epcc	European Paediatric Cardiac Codes	https://www.aepc.org/european-paediatric-cardiac-coding	Collection of European paediatric cardiac coding files								False																						
+epd	Eukaryotic Promoter Database	http://epd.vital-it.ch/	The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.	^[A-Z-_0-9]+$	TA_H3		http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$1				False			EPD						2386	epd	epd							EPD				
+epio	Epilepsy Ontology	https://github.com/SCAI-BIO/EpilepsyOntology	A application driven Epilepsy Ontology with official terms from the ILAE.	^\d{7}$	0000011	alpha.tom.kodamullil@scai.fraunhofer.de	http://purl.obolibrary.org/obo/EPIO_$1				False	EPIO			EPIO								epio		EPIO								
+epo	Epidemiology Ontology	https://code.google.com/p/epidemiology-ontology/	An ontology designed to support the semantic annotation of epidemiology resources				http://purl.obolibrary.org/obo/EPO_$1	https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/epidemiology-ontology/epo.owl			True	EPO		EPO	EPO								epo		EPO								
+epso	Epilepsy and Seizure Ontology	http://prism.case.edu/prism/index.php/EpilepsyOntology	The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. 	^\d{7}$	0000400						False	EPSO			EPSO										EPSO								
+erm	European Registry of Materials	https://nanocommons.github.io/identifiers/	The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project.	^ERM[0-9]{8}$	ERM00000044		https://nanocommons.github.io/identifiers/registry#$1				False										erm	erm											
+ero	eagle-i resource ontology	https://open.med.harvard.edu/wiki/display/eaglei/Ontology	An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.	^\d{7}$	0001655	Marc_Ciriello@hms.harvard.edu	http://purl.obolibrary.org/obo/ERO_$1				True	ERO		ERO	ERO								ero	ero	ERO								
+erv	Human Endogenous Retrovirus Database	https://herv.img.cas.cz/	Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.	^[A-Za-z0-9\-\_]+$	THE1B		https://herv.img.cas.cz/s/$1				False			ERV							erv	erv											
+estdab	European Searchable Tumour Line Database	https://www.ebi.ac.uk/ipd/estdab/	Cell line databases/resources	^\d{3}$	046		https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1				True					ESTDAB																	
+eu89h	JRC Data Catalogue	http://data.jrc.ec.europa.eu/	The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.	^[a-z0-9\-_]+$	jrc-eurl-ecvam-chemagora		http://data.europa.eu/89h/$1				False			EU89H							eu89h	eu89h											
 euclinicaltrials	EU Clinical Trials	https://www.clinicaltrialsregister.eu/	"The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.
-It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."	^\d{4}\-\d{6}\-\d{2}$	2008-005144-16		https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1				False			EUCLINICALTRIALS							euclinicaltrials	euclinicaltrials										
-eupath	VEuPathDB ontology	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology	The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.	^\d{7}$	0010316	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/EUPATH_$1				False	EUPATH		EUPATH	EUPATH								eupath	eupath	EUPATH							
-eurofir	European Food Information Resource Network	https://www.eurofir.org	EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.								False																					
-ev	eVOC (Expressed Sequence Annotation for Humans)	http://www.evocontology.org/				evoc@sanbi.ac.za	http://purl.obolibrary.org/obo/EV_$1				True			EV									ev									
-evm	eVOC mouse development stage										True																					
-exac.gene	ExAC Gene	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.	^ENSG\d{11}$	ENSG00000169174		http://exac.broadinstitute.org/gene/$1				False			EXAC.GENE							exac.gene	exac.gene										
-exac.transcript	ExAC Transcript	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.	^ENST\d{11}$	ENST00000407236		http://exac.broadinstitute.org/transcript/$1				False			EXAC.TRANSCRIPT							exac.transcript	exac.transcript										
-exac.variant	ExAC Variant	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.	^\d{1,2}\-\d+\-[GATC]\-[GATC]$	22-46615880-T-C		http://exac.broadinstitute.org/variant/$1				False			EXAC.VARIANT							exac.variant	exac.variant										
-exo	Exposure ontology	https://github.com/CTDbase/exposure-ontology	ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.	^\d{7}$	0000078	annethessen@gmail.com	http://purl.obolibrary.org/obo/EXO_$1			ExO	False	EXO		EXO	EXO								exo	exo	ExO							
-fabio	FaBiO, the FRBR-aligned Bibliographic Ontology	https://github.com/sparontologies/fabio	The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.		d4e2515		https://sparontologies.github.io/fabio/current/fabio.html#$1				False	FaBiO																				
-facebase	FaceBase Data Repository	https://www.facebase.org	FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.	^FB\d{8}$	FB00000917		https://www.facebase.org/data/record/#1/isa:dataset/accession=$1				False			FACEBASE							facebase	facebase										
-fairsharing	FAIRsharing	https://fairsharing.org/	The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.	^bsg-[dscp]?\d{6}$	bsg-000052		https://fairsharing.org/$1				False			FAIRSHARING							fairsharing	fairsharing										
-faldo	Feature Annotation Location Description Ontology 	http://biohackathon.org/resource/faldo	It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources		ForwardStrandPosition		http://biohackathon.org/resource/faldo#$1				False	FALDO	FALDO	faldo	FALDO																	
-fao	Fungal gross anatomy	https://github.com/obophenotype/fungal-anatomy-ontology/	A structured controlled vocabulary for the anatomy of fungi.	^\d{7}$	0000001	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FAO_$1				False	FAO		FAO	FAO								fao	fao	FAO		fao					
-fbbi	Biological Imaging Methods Ontology	http://cellimagelibrary.org/	A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.	^\d+$	00000268	wawong@gmail.com	http://purl.obolibrary.org/obo/FBbi_$1			FBbi	False	FBbi		FBbi	FBbi								fbbi	fbbi	FBBI		fbbi					
-fbbt	Drosophila gross anatomy	http://purl.obolibrary.org/obo/fbbt	An ontology of Drosophila melanogaster anatomy.	^\d{8}$	00007294	cp390@cam.ac.uk	https://flybase.org/cgi-bin/cvreport.pl?id=FBbt:$1			FBbt|FBbt_root	False	FBBT		FBbt	FB-BT								fbbt	fbbt	FBBT		fbbt			flybase		
-fbcv	FlyBase Controlled Vocabulary	http://purl.obolibrary.org/obo/fbcv	A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.	^\d{7}$	0000586	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1		https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo	FBcv	False	FBCV		FBcv	FB-CV								fbcv	fbcv	FBCV		fbcv			flybase		
-fbdv	Drosophila development	http://purl.obolibrary.org/obo/fbdv	An ontology of Drosophila melanogaster developmental stages.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBdv_$1			FBdv	False	FBDV		FBdv	FB-DV								fbdv	fbdv	FBdv		fbdv					
-fbol	International Fungal Working Group Fungal Barcoding.	http://www.fungalbarcoding.org/	DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.	^\d+$	2224		http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T				True			FBOL							fbol	fbol										
-fbql	FlyBase Qualifiers			^\d+$	00005254						True																					
-fbrf	FlyBase Reference Report	https://flybase.org	FlyBase internal citation identifiers	^\d{7}$	0187632		https://flybase.org/reports/FBrf$1				False																			flybase		
-fbsp	Fly taxonomy	http://www.flybase.org/	The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBSP_$1				True	FB-SP		FBSP	FB-SP								fbsp							flybase		
-fbtc	Flybase Cell Line	https://flybase.org	The cell line vocabulary inside FlyBase	^\d{7}$	0000190		https://flybase.org/reports/FBtc$1				False																			flybase		
+It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."	^\d{4}\-\d{6}\-\d{2}$	2008-005144-16		https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1				False			EUCLINICALTRIALS							euclinicaltrials	euclinicaltrials											
+eupath	VEuPathDB ontology	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology	The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.	^\d{7}$	0010316	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/EUPATH_$1				False	EUPATH		EUPATH	EUPATH								eupath	eupath	EUPATH								
+eurofir	European Food Information Resource Network	https://www.eurofir.org	EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.								False																						
+ev	eVOC (Expressed Sequence Annotation for Humans)	http://www.evocontology.org/				evoc@sanbi.ac.za	http://purl.obolibrary.org/obo/EV_$1				True			EV									ev										
+evm	eVOC mouse development stage										True																						
+exac.gene	ExAC Gene	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.	^ENSG\d{11}$	ENSG00000169174		http://exac.broadinstitute.org/gene/$1				False			EXAC.GENE							exac.gene	exac.gene											
+exac.transcript	ExAC Transcript	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.	^ENST\d{11}$	ENST00000407236		http://exac.broadinstitute.org/transcript/$1				False			EXAC.TRANSCRIPT							exac.transcript	exac.transcript											
+exac.variant	ExAC Variant	http://exac.broadinstitute.org/	The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.	^\d{1,2}\-\d+\-[GATC]\-[GATC]$	22-46615880-T-C		http://exac.broadinstitute.org/variant/$1				False			EXAC.VARIANT							exac.variant	exac.variant											
+exo	Exposure ontology	https://github.com/CTDbase/exposure-ontology	ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.	^\d{7}$	0000078	annethessen@gmail.com	http://purl.obolibrary.org/obo/EXO_$1			ExO	False	EXO		EXO	EXO								exo	exo	ExO								
+fabio	FaBiO, the FRBR-aligned Bibliographic Ontology	https://github.com/sparontologies/fabio	The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.		d4e2515		https://sparontologies.github.io/fabio/current/fabio.html#$1				False	FaBiO																					
+facebase	FaceBase Data Repository	https://www.facebase.org	FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.	^FB\d{8}$	FB00000917		https://www.facebase.org/data/record/#1/isa:dataset/accession=$1				False			FACEBASE							facebase	facebase						r3d100013263					
+fairsharing	FAIRsharing	https://fairsharing.org/	The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.	^bsg-[dscp]?\d{6}$	bsg-000052		https://fairsharing.org/$1				False			FAIRSHARING							fairsharing	fairsharing						r3d100010142					
+faldo	Feature Annotation Location Description Ontology 	http://biohackathon.org/resource/faldo	It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources		ForwardStrandPosition		http://biohackathon.org/resource/faldo#$1				False	FALDO	FALDO	faldo	FALDO																		
+fao	Fungal gross anatomy	https://github.com/obophenotype/fungal-anatomy-ontology/	A structured controlled vocabulary for the anatomy of fungi.	^\d{7}$	0000001	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FAO_$1				False	FAO		FAO	FAO								fao	fao	FAO		fao						
+fbbi	Biological Imaging Methods Ontology	http://cellimagelibrary.org/	A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.	^\d+$	00000268	wawong@gmail.com	http://purl.obolibrary.org/obo/FBbi_$1			FBbi	False	FBbi		FBbi	FBbi								fbbi	fbbi	FBBI		fbbi						
+fbbt	Drosophila gross anatomy	http://purl.obolibrary.org/obo/fbbt	An ontology of Drosophila melanogaster anatomy.	^\d{8}$	00007294	cp390@cam.ac.uk	https://flybase.org/cgi-bin/cvreport.pl?id=FBbt:$1			FBbt|FBbt_root	False	FBBT		FBbt	FB-BT								fbbt	fbbt	FBBT		fbbt				flybase		
+fbcv	FlyBase Controlled Vocabulary	http://purl.obolibrary.org/obo/fbcv	A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.	^\d{7}$	0000586	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBcv_$1		https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo	FBcv	False	FBCV		FBcv	FB-CV								fbcv	fbcv	FBCV		fbcv				flybase		
+fbdv	Drosophila development	http://purl.obolibrary.org/obo/fbdv	An ontology of Drosophila melanogaster developmental stages.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBdv_$1			FBdv	False	FBDV		FBdv	FB-DV								fbdv	fbdv	FBdv		fbdv						
+fbol	International Fungal Working Group Fungal Barcoding.	http://www.fungalbarcoding.org/	DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.	^\d+$	2224		http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T				True			FBOL							fbol	fbol											
+fbql	FlyBase Qualifiers			^\d+$	00005254						True																						
+fbrf	FlyBase Reference Report	https://flybase.org	FlyBase internal citation identifiers	^\d{7}$	0187632		https://flybase.org/reports/FBrf$1				False																				flybase		
+fbsp	Fly taxonomy	http://www.flybase.org/	The taxonomy of the family <i>Drosophilidae</i> (largely after Baechli) and of other taxa referred to in FlyBase.	^\d{8}$	00000000	cp390@cam.ac.uk	http://purl.obolibrary.org/obo/FBSP_$1				True	FB-SP		FBSP	FB-SP								fbsp								flybase		
+fbtc	Flybase Cell Line	https://flybase.org	The cell line vocabulary inside FlyBase	^\d{7}$	0000190		https://flybase.org/reports/FBtc$1				False																				flybase		
 fcb	the FAIR Cookbook	https://w3id.org	"Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).
 
-"	^FCB\d{3}$	FCB005		https://w3id.org/faircookbook/$1				False										fcb											
-fcsfree	Fetal Calf Serum-Free Database	https://fcs-free.org	Cell line databases/resources		240-17-488-3-4-12		https://fcs-free.org/fcs-database?$1				False					FCS-free																
-fideo	Food Interactions with Drugs Evidence Ontology	https://gitub.u-bordeaux.fr/erias/fideo	The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there.	^\d{8}$	00000021	georgeta.bordea@u-bordeaux.fr	http://purl.obolibrary.org/obo/FIDEO_$1				False	FIDEO			FIDEO								fideo	fideo	FIDEO							
-fishbase.species	FishBase	http://fishbase.org	Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years.	^\d+$	6472					fishbase	False																		P938			
-fivestars	Five Stars of Online Research Articles Ontology	http://www.sparontologies.net/ontologies/fivestars	An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata.		hasOpenAccessRating						False																					
-fix	Physico-chemical methods and properties	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical methods and properties.	^\d{7}$	0000390		http://purl.obolibrary.org/obo/FIX_$1				True	FIX		FIX	FIX								fix	fix	FIX		fix			chebi		
-flopo	Flora Phenotype Ontology	https://github.com/flora-phenotype-ontology/flopoontology	Traits and phenotypes of flowering plants occurring in digitized Floras	^\d{7}$	0005250	robert.hoehndorf@kaust.edu.sa	http://purl.obolibrary.org/obo/FLOPO_$1				False	FLOPO	FLOPO	FLOPO	FLOPO								flopo	flopo	FLOPO							
-flowrepository	FlowRepository	https://flowrepository.org/	FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.	^FR\-FCM\-\w{4}$	FR-FCM-ZYGW		https://flowrepository.org/id/$1				False										flowrepository	flowrepository										
-flu	Influenza Ontology	http://purl.obolibrary.org/obo/flu/		^\d{7}$	0000404	burkesquires@gmail.com	http://purl.obolibrary.org/obo/FLU_$1				True	FLU		FLU	FLU								flu									
-flybase	FlyBase Gene	http://flybase.org/	FlyBase is the database of the Drosophila Genome Projects and of associated literature.	^FB\w{2}\d{7}$	FBgn0011293		https://flybase.org/reports/$1			FB|FlyBase	False			FlyBase		FlyBase				1089	fb	fb					flybase	FlyBase	P3852			
-flybrain.ndb	FlyBrain Neuron Database	https://flybrain-ndb.virtualflybrain.org	A database of fly neurons and pathways with an associated 3D viewer.	^\d+$	10531		https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html				False																					
-fma	Foundational Model of Anatomy	http://si.washington.edu/projects/fma	The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.	^\d+$	63189	mejino@u.washington.edu	https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:$1			FMAID|FMA_RETIRED	True	FMA		FMA	FMA					1182	fma	fma	fma	fma	FMA		fma					
-foaf	Friend of a Friend	http://xmlns.com/foaf/spec/	FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.		familyName		http://xmlns.com/foaf/0.1/$1				False	foaf		foaf	FOAF																	
-fobi	Food-Biomarker Ontology	https://github.com/pcastellanoescuder/FoodBiomarkerOntology	FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data	^\d{6}$	030719	polcaes@gmail.com	http://purl.obolibrary.org/obo/FOBI_$1				False	FOBI	FOBI		FOBI								fobi	fobi	FOBI							
-foodb.compound	FooDB Compound	https://foodb.ca/	FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.	^FDB\d+$	FDB002100		http://foodb.ca/compounds/$1			foodb	False			FOODB.COMPOUND							foodb.compound	foodb.compound										
-foodb.food	FooDB Food	https://foodb.ca/foods	Foods in FooDB	^FOOD\d+$	FOOD00020		https://foodb.ca/foods/$1				False																					
-foodon	The Food Ontology	https://foodon.org/	FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.	^[0-9]{8}$	03307879	damion_dooley@sfu.ca	https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$1				False	FOODON	FOODON	FOODON	FOODON						foodon	foodon	foodon	foodon	FOODON							
-fossilworks.journal	Fossilworks Journal	http://fossilworks.org	Identifier for a journal article in the fossilworks website	^\d+$	61467		http://fossilworks.org/?a=referenceInfo&reference_no=$1				False																		P7720	fossilworks		
-fossilworks.taxon	Fossilworks Taxon	http://www.fossilworks.org	Identifier for an animal, plant, or microorganism from the fossilworks website	^[1-9]\d{0,5}$	40565		http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1				False																		P842	fossilworks		
-fovt	FuTRES Ontology of Vertebrate Traits	https://github.com/futres/fovt	None	^\d{7}$	0000009	meghan.balk@gmail.com	http://purl.obolibrary.org/obo/FOVT_$1				False	FOVT			FOVT								fovt	fovt	FOVT							
-fplx	FamPlex	https://sorgerlab.github.io/famplex/	FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.	^[a-zA-Z0-9][A-Za-z0-9_]+$	GPIb_IX_V		https://sorgerlab.github.io/famplex/$1			famplex	False	FPLX		FPLX	FPLX						fplx	fplx										
-fr	FAIR* Reviews Ontology	http://www.sparontologies.net/ontologies/fr	An ontology that enables the description of reviews of scientific articles and other scholarly resources.		ReviewVersion						False																					
-frapo	Funding, Research Administration and Projects Ontology	http://www.sparontologies.net/ontologies/frapo	An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.		Grant		http://purl.org/cerif/frapo/$1				False	FRAPO																				
-frbr	Functional Requirements for Bibliographic Records	http://www.sparontologies.net/ontologies/frbr	The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO.		Expression		http://purl.org/vocab/frbr/core#$1				False																					
-fsnp	F-SNP	http://compbio.cs.queensu.ca/F-SNP/	The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.	^rs\d+$	rs17852708		http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1				False			FSNP							fsnp	fsnp					fsnp					
-ftt	Feature Type Thesaurus	https://apps.usgs.gov/thesaurus/thesaurus-full.php?thcode=3	Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific.	^\d+$	273		https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1				False																					
-funcbase.fly	FuncBase Fly	http://func.mshri.on.ca/fly	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.	^\d+$	10194		http://func.mshri.on.ca/fly/genes/list_functional_scores/$1				False			FUNCBASE.FLY							funcbase.fly	funcbase.fly										
-funcbase.human	FuncBase Human	http://func.mshri.on.ca/human/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.	^\d+$	119514		http://func.mshri.on.ca/human/genes/list_functional_scores/$1				False			FUNCBASE.HUMAN							funcbase.human	funcbase.human										
-funcbase.mouse	FuncBase Mouse	http://func.mshri.on.ca/mouse/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.	^\d+$	1351341		http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1				False			FUNCBASE.MOUSE							funcbase.mouse	funcbase.mouse										
-funcbase.yeast	FuncBase Yeast	http://func.mshri.on.ca/yeast	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.	^\d+$	2701		http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1				False			FUNCBASE.YEAST							funcbase.yeast	funcbase.yeast										
-funderregistry	FunderRegistry	https://www.crossref.org/	The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.	^\d{9,9}$	100000001		http://data.crossref.org/fundingdata/funder/10.13039/$1				False										funderregistry											
-fungidb	FungiDB	https://fungidb.org/fungidb	FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.	^[A-Za-z_0-9]+$	CNBG_0001		https://fungidb.org/fungidb/app/record/gene/$1				False			FUNGIDB							fungidb	fungidb										
-fungorum	Index Fungorum	http://www.indexfungorum.org	identifier for a fungus taxon in Index Fungorum	^[1-9]\d{0,5}$	154022		http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1				False																		P1391			
-fyeco	Fission Yeast Experimental Conditions Ontology	https://github.com/pombase/fypo	PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.	^\d{7}$	0000003	vw253@cam.ac.uk					False																					
-fyler	Fyler	https://www.elsevier.com/books/nadas-pediatric-cardiology/9781416023906	A hierarchical classification of congenital heart disease 	^\d+$	4447						False																					
-fypo	Fission Yeast Phenotype Ontology	https://github.com/pombase/fypo	A formal ontology of phenotypes observed in fission yeast.	^\d{7}$	0001707	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FYPO_$1		http://purl.obolibrary.org/obo/fypo.obo		False	FYPO		FYPO	FYPO								fypo	fypo	FYPO							
-ga4ghdos	Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#/\.]+$	dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d		https://dataguids.org/ga4gh/dos/v1/dataobjects/$1				False			GA4GHDOS							ga4ghdos	ga4ghdos										
-gabi	Network of Different Plant Genomic Research Projects	http://www.gabipd.org/	GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.	^\w+$	2679240		http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject				False			GABI							gabi	gabi					gabi					
-galen	GALEN	https://www.opengalen.org			MagnitudeValueType						True	GALEN			GALEN																	
-gard	Genetic and Rare Diseases Information Center	https://rarediseases.info.nih.gov/diseases	Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease.	^\d+$	6038					GARD|Genetic and Rare Diseases Information Center	False																		P4317			
-gateway	Health Data Research Innovation Gateway	https://www.hdruk.ac.uk	The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.	^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$	fd8d0743-344a-4758-bb97-f8ad84a37357		https://web.www.healthdatagateway.org/dataset/$1				False										gateway											
-gaz	Gazetteer	http://environmentontology.github.io/gaz/	A gazetteer constructed on ontological principles	^\d{8}$	00620027	lschriml@som.umaryland.edu	http://purl.obolibrary.org/obo/GAZ_$1		http://purl.obolibrary.org/obo/gaz.obo		True	GAZ		GAZ	GAZ								gaz	gaz	GAZ				P6778			
+"	^FCB\d{3}$	FCB005		https://w3id.org/faircookbook/$1				False										fcb												
+fcsfree	Fetal Calf Serum-Free Database	https://fcs-free.org	Cell line databases/resources		240-17-488-3-4-12		https://fcs-free.org/fcs-database?$1				False					FCS-free																	
+fideo	Food Interactions with Drugs Evidence Ontology	https://gitub.u-bordeaux.fr/erias/fideo	The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there.	^\d{8}$	00000021	georgeta.bordea@u-bordeaux.fr	http://purl.obolibrary.org/obo/FIDEO_$1				False	FIDEO			FIDEO								fideo	fideo	FIDEO								
+fishbase.species	FishBase	http://fishbase.org	Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years.	^\d+$	6472					fishbase	False																	r3d100010912		P938			
+fivestars	Five Stars of Online Research Articles Ontology	http://www.sparontologies.net/ontologies/fivestars	An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata.		hasOpenAccessRating						False																						
+fix	Physico-chemical methods and properties	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical methods and properties.	^\d{7}$	0000390		http://purl.obolibrary.org/obo/FIX_$1				True	FIX		FIX	FIX								fix	fix	FIX		fix				chebi		
+flopo	Flora Phenotype Ontology	https://github.com/flora-phenotype-ontology/flopoontology	Traits and phenotypes of flowering plants occurring in digitized Floras	^\d{7}$	0005250	robert.hoehndorf@kaust.edu.sa	http://purl.obolibrary.org/obo/FLOPO_$1				False	FLOPO	FLOPO	FLOPO	FLOPO								flopo	flopo	FLOPO								
+flowrepository	FlowRepository	https://flowrepository.org/	FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.	^FR\-FCM\-\w{4}$	FR-FCM-ZYGW		https://flowrepository.org/id/$1				False										flowrepository	flowrepository						r3d100011280					
+flu	Influenza Ontology	http://purl.obolibrary.org/obo/flu/		^\d{7}$	0000404	burkesquires@gmail.com	http://purl.obolibrary.org/obo/FLU_$1				True	FLU		FLU	FLU								flu										
+flybase	FlyBase Gene	http://flybase.org/	FlyBase is the database of the Drosophila Genome Projects and of associated literature.	^FB\w{2}\d{7}$	FBgn0011293		https://flybase.org/reports/$1			FB|FlyBase	False			FlyBase		FlyBase				1089	fb	fb					flybase	r3d100010591	FlyBase	P3852			
+flybrain.ndb	FlyBrain Neuron Database	https://flybrain-ndb.virtualflybrain.org	A database of fly neurons and pathways with an associated 3D viewer.	^\d+$	10531		https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html				False																						
+fma	Foundational Model of Anatomy	http://si.washington.edu/projects/fma	The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body.  Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.	^\d+$	63189	mejino@u.washington.edu	https://www.ebi.ac.uk/ols/ontologies/fma/terms?obo_id=FMA:$1			FMAID|FMA_RETIRED	True	FMA		FMA	FMA					1182	fma	fma	fma	fma	FMA		fma						
+foaf	Friend of a Friend	http://xmlns.com/foaf/spec/	FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.		familyName		http://xmlns.com/foaf/0.1/$1				False	foaf		foaf	FOAF																		
+fobi	Food-Biomarker Ontology	https://github.com/pcastellanoescuder/FoodBiomarkerOntology	FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data	^\d{6}$	030719	polcaes@gmail.com	http://purl.obolibrary.org/obo/FOBI_$1				False	FOBI	FOBI		FOBI								fobi	fobi	FOBI								
+foodb.compound	FooDB Compound	https://foodb.ca/	FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.	^FDB\d+$	FDB002100		http://foodb.ca/compounds/$1			foodb	False			FOODB.COMPOUND							foodb.compound	foodb.compound						r3d100012152					
+foodb.food	FooDB Food	https://foodb.ca/foods	Foods in FooDB	^FOOD\d+$	FOOD00020		https://foodb.ca/foods/$1				False																						
+foodon	The Food Ontology	https://foodon.org/	FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.	^[0-9]{8}$	03307879	damion_dooley@sfu.ca	https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:$1				False	FOODON	FOODON	FOODON	FOODON						foodon	foodon	foodon	foodon	FOODON								
+fossilworks.journal	Fossilworks Journal	http://fossilworks.org	Identifier for a journal article in the fossilworks website	^\d+$	61467		http://fossilworks.org/?a=referenceInfo&reference_no=$1				False																			P7720	fossilworks		
+fossilworks.taxon	Fossilworks Taxon	http://www.fossilworks.org	Identifier for an animal, plant, or microorganism from the fossilworks website	^[1-9]\d{0,5}$	40565		http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1				False																			P842	fossilworks		
+fovt	FuTRES Ontology of Vertebrate Traits	https://github.com/futres/fovt	None	^\d{7}$	0000009	meghan.balk@gmail.com	http://purl.obolibrary.org/obo/FOVT_$1				False	FOVT			FOVT								fovt	fovt	FOVT								
+fplx	FamPlex	https://sorgerlab.github.io/famplex/	FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.	^[a-zA-Z0-9][A-Za-z0-9_]+$	GPIb_IX_V		https://sorgerlab.github.io/famplex/$1			famplex	False	FPLX		FPLX	FPLX						fplx	fplx											
+fr	FAIR* Reviews Ontology	http://www.sparontologies.net/ontologies/fr	An ontology that enables the description of reviews of scientific articles and other scholarly resources.		ReviewVersion						False																						
+frapo	Funding, Research Administration and Projects Ontology	http://www.sparontologies.net/ontologies/frapo	An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.		Grant		http://purl.org/cerif/frapo/$1				False	FRAPO																					
+frbr	Functional Requirements for Bibliographic Records	http://www.sparontologies.net/ontologies/frbr	The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO.		Expression		http://purl.org/vocab/frbr/core#$1				False																						
+fsnp	F-SNP	http://compbio.cs.queensu.ca/F-SNP/	The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.	^rs\d+$	rs17852708		http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp;id_type=snp_id&amp;id_val=$1				False			FSNP							fsnp	fsnp					fsnp						
+ftt	Feature Type Thesaurus	https://apps.usgs.gov/thesaurus/thesaurus-full.php?thcode=3	Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific.	^\d+$	273		https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1				False																						
+funcbase.fly	FuncBase Fly	http://func.mshri.on.ca/fly	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.	^\d+$	10194		http://func.mshri.on.ca/fly/genes/list_functional_scores/$1				False			FUNCBASE.FLY							funcbase.fly	funcbase.fly											
+funcbase.human	FuncBase Human	http://func.mshri.on.ca/human/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.	^\d+$	119514		http://func.mshri.on.ca/human/genes/list_functional_scores/$1				False			FUNCBASE.HUMAN							funcbase.human	funcbase.human											
+funcbase.mouse	FuncBase Mouse	http://func.mshri.on.ca/mouse/	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.	^\d+$	1351341		http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1				False			FUNCBASE.MOUSE							funcbase.mouse	funcbase.mouse											
+funcbase.yeast	FuncBase Yeast	http://func.mshri.on.ca/yeast	Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.	^\d+$	2701		http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1				False			FUNCBASE.YEAST							funcbase.yeast	funcbase.yeast											
+funderregistry	FunderRegistry	https://www.crossref.org/	The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.	^\d{9,9}$	100000001		http://data.crossref.org/fundingdata/funder/10.13039/$1				False										funderregistry												
+fungidb	FungiDB	https://fungidb.org/fungidb	FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.	^[A-Za-z_0-9]+$	CNBG_0001		https://fungidb.org/fungidb/app/record/gene/$1				False			FUNGIDB							fungidb	fungidb						r3d100011906					
+fungorum	Index Fungorum	http://www.indexfungorum.org	identifier for a fungus taxon in Index Fungorum	^[1-9]\d{0,5}$	154022		http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1				False																			P1391			
+fyeco	Fission Yeast Experimental Conditions Ontology	https://github.com/pombase/fypo	PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.	^\d{7}$	0000003	vw253@cam.ac.uk					False																						
+fyler	Fyler	https://www.elsevier.com/books/nadas-pediatric-cardiology/9781416023906	A hierarchical classification of congenital heart disease 	^\d+$	4447						False																						
+fypo	Fission Yeast Phenotype Ontology	https://github.com/pombase/fypo	A formal ontology of phenotypes observed in fission yeast.	^\d{7}$	0001707	vw253@cam.ac.uk	http://purl.obolibrary.org/obo/FYPO_$1		http://purl.obolibrary.org/obo/fypo.obo		False	FYPO		FYPO	FYPO								fypo	fypo	FYPO								
+ga4ghdos	Data Object Service	http://github.com/ga4gh/data-object-service-schemas	Assists in resolving data across cloud resources.	^[a-zA-Z0-9\-:#/\.]+$	dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d		https://dataguids.org/ga4gh/dos/v1/dataobjects/$1				False			GA4GHDOS							ga4ghdos	ga4ghdos											
+gabi	Network of Different Plant Genomic Research Projects	http://www.gabipd.org/	GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.	^\w+$	2679240		http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject				False			GABI							gabi	gabi					gabi						
+galen	GALEN	https://www.opengalen.org			MagnitudeValueType						True	GALEN			GALEN																		
+gard	Genetic and Rare Diseases Information Center	https://rarediseases.info.nih.gov/diseases	Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease.	^\d+$	6038					GARD|Genetic and Rare Diseases Information Center	False																			P4317			
+gateway	Health Data Research Innovation Gateway	https://www.hdruk.ac.uk	The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.	^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$	fd8d0743-344a-4758-bb97-f8ad84a37357		https://web.www.healthdatagateway.org/dataset/$1				False										gateway												
+gaz	Gazetteer	http://environmentontology.github.io/gaz/	A gazetteer constructed on ontological principles	^\d{8}$	00620027	lschriml@som.umaryland.edu	http://purl.obolibrary.org/obo/GAZ_$1		http://purl.obolibrary.org/obo/gaz.obo		True	GAZ		GAZ	GAZ								gaz	gaz	GAZ					P6778			
 gbif	Global Biodiversity Information Facility	https://www.gbif.org/species	"Database of living organisms, taxonomic. 
- The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."	^\d+$	4238		https://www.gbif.org/species/$1				False																		P846			
-gc	Genetic Code	https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html	Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.	^\d+$	11		https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1			gc_id	False																					
-gcst	GWAS Catalog	https://www.ebi.ac.uk	The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.	^GCST\d{6}\d*$	GCST000035		https://www.ebi.ac.uk/gwas/studies/$1				False										gcst	gcst										
-gdc	Genomic Data Commons Data Portal	https://gdc.cancer.gov	The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.	^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$	ae8c77fe-e6c8-44d5-8265-4a38c637bbef		https://portal.gdc.cancer.gov/cases/$1				False			GDC							gdc	gdc										
-gdsc	Genomics of Drug Sensitivity in Cancer	https://www.cancerrxgene.org	The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.	^[0-9]+$	1242		https://www.cancerrxgene.org/translation/Drug/$1				False					GDSC					gdsc	gdsc										
-gecko	Genomics Cohorts Knowledge Ontology	https://github.com/IHCC-cohorts/GECKO	An ontology to represent genomics cohort attributes.	^\d{7}$	0000044	rbca.jackson@gmail.com	http://purl.obolibrary.org/obo/GECKO_$1				False	GECKO			GECKO								gecko	gecko	GECKO							
-gemet	General Multilingual Environmental Thesaurus	https://www.eionet.europa.eu/gemet/en/themes/	The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.	^\d+$	627		https://www.eionet.europa.eu/gemet/en/concept/$1				False		GEMET																			
-genatlas	Genatlas	http://genatlas.medecine.univ-paris5.fr/	GenAtlas is a database containing information on human genes, markers and phenotypes.	^\w+$	HBB		http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1				False			GENATLAS							genatlas	genatlas					genatlas	GenAtlas				
-genbank	GenBank	https://www.ncbi.nlm.nih.gov/genbank/	GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).		U49845		https://www.ncbi.nlm.nih.gov/nucleotide/$1				False			GenBank			000304			2292							genbank	GenBank				
-genecards	GeneCards	http://www.genecards.org/	The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.	^[A-Za-z-0-9_]+(\@)?$	ABL1		https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1				False			GENECARDS							genecards	genecards					genecards	GeneCards				
-genedb	GeneDB	https://www.genedb.org/	"GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the ""Pathogen Genomics"" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."	^[\w\d\.-]*$	LinJ.20.0070		https://www.genedb.org/gene/$1				True			GENEDB						1035	genedb	genedb					genedb	GeneDB	P3382			
-genefarm	GeneFarm	http://urgi.versailles.inra.fr/Genefarm/	GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.	^\d+$	4892		https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1				False			GENEFARM							genefarm	genefarm					genefarm					
-genepio	Genomic Epidemiology Ontology	http://genepio.org/	The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.	^\d{7}$	0001885	damion_dooley@sfu.ca	http://purl.obolibrary.org/obo/GENEPIO_$1				False	GENEPIO		GENEPIO									genepio	genepio	GENEPIO							
-genetree	GeneTree	http://www.ensembl.org/	Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.	^ENSGT\d+$	ENSGT00550000074763		http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1				False			GENETREE							genetree	genetree					genetree	GeneTree				
-genewiki	Gene Wiki	http://en.wikipedia.org/wiki/Gene_Wiki	The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.	^\d+$	1017		http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1				False			GENEWIKI							genewiki	genewiki						GeneWiki				
+ The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."	^\d+$	4238		https://www.gbif.org/species/$1				False																			P846			
+gc	Genetic Code	https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html	Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.	^\d+$	11		https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1			gc_id	False																						
+gcst	GWAS Catalog	https://www.ebi.ac.uk	The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.	^GCST\d{6}\d*$	GCST000035		https://www.ebi.ac.uk/gwas/studies/$1				False										gcst	gcst											
+gdc	Genomic Data Commons Data Portal	https://gdc.cancer.gov	The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.	^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$	ae8c77fe-e6c8-44d5-8265-4a38c637bbef		https://portal.gdc.cancer.gov/cases/$1				False			GDC							gdc	gdc											
+gdsc	Genomics of Drug Sensitivity in Cancer	https://www.cancerrxgene.org	The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.	^[0-9]+$	1242		https://www.cancerrxgene.org/translation/Drug/$1				False					GDSC					gdsc	gdsc											
+gecko	Genomics Cohorts Knowledge Ontology	https://github.com/IHCC-cohorts/GECKO	An ontology to represent genomics cohort attributes.	^\d{7}$	0000044	rbca.jackson@gmail.com	http://purl.obolibrary.org/obo/GECKO_$1				False	GECKO			GECKO								gecko	gecko	GECKO								
+gemet	General Multilingual Environmental Thesaurus	https://www.eionet.europa.eu/gemet/en/themes/	The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.	^\d+$	627		https://www.eionet.europa.eu/gemet/en/concept/$1				False		GEMET																				
+genatlas	Genatlas	http://genatlas.medecine.univ-paris5.fr/	GenAtlas is a database containing information on human genes, markers and phenotypes.	^\w+$	HBB		http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1				False			GENATLAS							genatlas	genatlas					genatlas		GenAtlas				
+genbank	GenBank	https://www.ncbi.nlm.nih.gov/genbank/	GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).		U49845		https://www.ncbi.nlm.nih.gov/nucleotide/$1				False			GenBank			000304			2292							genbank	r3d100010528	GenBank				
+genecards	GeneCards	http://www.genecards.org/	The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.	^[A-Za-z-0-9_]+(\@)?$	ABL1		https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1				False			GENECARDS							genecards	genecards					genecards	r3d100012015	GeneCards				
+genedb	GeneDB	https://www.genedb.org/	"GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the ""Pathogen Genomics"" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."	^[\w\d\.-]*$	LinJ.20.0070		https://www.genedb.org/gene/$1				True			GENEDB						1035	genedb	genedb					genedb	r3d100010626	GeneDB	P3382			
+genefarm	GeneFarm	http://urgi.versailles.inra.fr/Genefarm/	GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.	^\d+$	4892		https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1				False			GENEFARM							genefarm	genefarm					genefarm						
+genepio	Genomic Epidemiology Ontology	http://genepio.org/	The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.	^\d{7}$	0001885	damion_dooley@sfu.ca	http://purl.obolibrary.org/obo/GENEPIO_$1				False	GENEPIO		GENEPIO									genepio	genepio	GENEPIO								
+genetree	GeneTree	http://www.ensembl.org/	Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.	^ENSGT\d+$	ENSGT00550000074763		http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1				False			GENETREE							genetree	genetree					genetree		GeneTree				
+genewiki	Gene Wiki	http://en.wikipedia.org/wiki/Gene_Wiki	The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.	^\d+$	1017		http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1				False			GENEWIKI							genewiki	genewiki							GeneWiki				
 geno	Genotype Ontology	https://github.com/monarch-initiative/GENO-ontology/	"GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities.  At present many parts of the model are exploratory and set to undergo refactoring.  In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc).  Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. 
 
-Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"	^\d{7}$	0000632	mhb120@gmail.com	http://purl.obolibrary.org/obo/GENO_$1		https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo		False	GENO		GENO	GENO								geno	geno	GENO							
-genpept	GenPept	https://www.ncbi.nlm.nih.gov/protein	The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.	^\w{3}\d{5}(\.\d+)?$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept				False			GENPEPT							genpept	genpept										
-genprop	Genome Properties	https://www.ebi.ac.uk/interpro/genomeproperties/	Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.	^GenProp\d+$	GenProp0699		https://www.ebi.ac.uk/interpro/genomeproperties/#$1				False			GENPROP							genprop	genprop										
-geo	NCBI Gene Expression Omnibus	https://www.ncbi.nlm.nih.gov/geo/	The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.	^G(PL|SM|SE|DS)\d+$	GDS1234		https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1				False	GEO		GEO		GEO				1147	geo	geo					geo					
-geogeo	Geographical Entity Ontology	https://github.com/ufbmi/geographical-entity-ontology/wiki	"An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction.  We thus distinguish and assign different identifiers to the US in ""The US declared war on Germany"" vs. the US in ""The plane entered US airspace""."	^\d{9}$	000000021	hoganwr@gmail.com	http://purl.obolibrary.org/obo/GEO_$1				False			GEO	GEO						geogeo		geo	geo	GEO							
-geonames	GeoNames	https://www.geonames.org	The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.	^\d+$	3532759		https://www.geonames.org/$1			Geomames|Geonamaes	False																					
-geonames.feature	GeoNames Feature Code	https://www.geonames.org/export/codes.html	All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.		ADM1		https://www.geonames.org/recent-changes/featurecode/$1/				False																					
-gexo	Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Gene Expression Ontology			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/GeXO/gexo.owl	https://www.bio.ntnu.no/ontology/GeXO/gexo.obo		False	GEXO			GEXO									gexo								
-ghr	Genetics Home Reference	https://medlineplus.gov/genetics/condition	MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA).		saddan		https://medlineplus.gov/genetics/condition/$1				False																					
-giardiadb	GiardiaDB	https://giardiadb.org/giardiadb/	GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	GL50803_102438		https://giardiadb.org/giardiadb/app/record/gene/$1				False			GIARDIADB							giardiadb	giardiadb					giardiadb					
-github	github	https://github.com/	GitHub is an online host of Git source code repositories.	^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$	biopragmatics/bioregistry		https://github.com/$1				False										github											
-github.issue	GitHub Issue	https://github.com/	An issue in any public repository on GitHub.		biopragmatics/bioregistry/424		https://bioregistry.io/resolve/github/issue/$1				False																					
-github.pull	GitHub Pull Request	https://github.com/	A pull request in any public repository on GitHub.		biopragmatics/bioregistry/416		https://bioregistry.io/resolve/github/pull/$1				False																					
-gitlab	GitLab	https://gitlab.com/	GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.	^.*/.*$	morpheus.lab/morpheus		https://gitlab.com/$1				False										gitlab											
-glida.gpcr	GLIDA GPCR	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.	^[A-Z-_0-9]+$	ACM1_HUMAN		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1				False			GLIDA.GPCR							glida.gpcr	glida.gpcr										
-glida.ligand	GLIDA Ligand	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.	^L\d+$	L000001		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1				False			GLIDA.LIGAND							glida.ligand	glida.ligand										
-glycoepitope	GlycoEpitope	https://www.glycoepitope.jp/epitopes/	GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.	^EP\d{4}$	EP0311		https://www.glycoepitope.jp/epitopes/$1				False			GLYCOEPITOPE							glycoepitope	glycoepitope										
-glycomedb	GlycomeDB	https://glytoucan.org/	GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.	^\w+$	G77500AY		https://glytoucan.org/Structures/Glycans/$1				False			GLYCOMEDB						2664	glycomedb	glycomedb					glycomedb					glytoucan
-glyconavi	GlycoNAVI	https://www.noguchi.or.jp/	"GlycoNAVI is a website for carbohydrate research. It consists of the ""GlycoNAVI Database"" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the ""GlycoNAVI tools"" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."	^GN_[A-Za-z0-9_:]+$	GN_G03681DA		https://glyconavi.org/hub/?id=$1				False										glyconavi											
-glycopost	GlycoPOST	https://glycopost.glycosmos.org	"GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their ""raw/processed"" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."	^GPST[0-9]{6}$	GPST000024		https://glycopost.glycosmos.org/entry/$1				False										glycopost											
-glygen	Computational and Informatics Resources for Glycoscience	https://glygen.org/glycan/	GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data.		G24361QY		https://glygen.org/glycan/$1				False																	GlyGen				
-glytoucan	GlyTouCan	https://glytoucan.org	GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.	^G[0-9]{5}[A-Z]{2}$	G00054MO		https://glytoucan.org/Structures/Glycans/$1				False			GLYTOUCAN							glytoucan	glytoucan										
-gmd	Golm Metabolome Database	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	68513255-fc44-4041-bc4b-4fd2fae7541d		http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx				False			GMD							gmd	gmd										
-gmd.analyte	Golm Metabolome Database Analyte	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	4f0fa9b6-514f-4ff4-98cc-0009bc08eb80		http://gmd.mpimp-golm.mpg.de/Analytes/$1				False			GMD.ANALYTE							gmd.analyte	gmd.analyte										
-gmd.gcms	Golm Metabolome Database GC-MS spectra	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	53d583d8-40c6-40e1-9296-23f821cd77a5		http://gmd.mpimp-golm.mpg.de/Spectrums/$1				False			GMD.GCMS							gmd.gcms	gmd.gcms										
-gmd.profile	Golm Metabolome Database Profile	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	10b38aaf-b977-4950-85b8-f4775f66658d		http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1				False			GMD.PROFILE							gmd.profile	gmd.profile										
-gmd.ref	Golm Metabolome Database Reference Substance	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	8cf84adb-b4db-4807-ac98-0004247c35df		http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1				False			GMD.REF							gmd.ref	gmd.ref										
-gmelin	Gmelins Handbuch der anorganischen Chemie	https://link.springer.com/bookseries/562	The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s.	^[1-9][0-9]{3,6}$	1466						False									1004									P1578			
-gno	Glycan Naming and Subsumption Ontology	https://gnome.glyomics.org/	An ontology for glycans based on GlyTouCan, but organized by subsumption.	^\d{8}$	10004892	nje5@georgetown.edu	http://purl.obolibrary.org/obo/GNO_$1				False	GNO			GNO								gno	gno	GNO							
-gnpis	GnpIS	https://urgi.versailles.inra.fr/gnpis/	GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.	^[A-Za-z0-9]+$	AY109603		https://urgi.versailles.inra.fr/gnpis/#result/term=$1				False			GNPIS							gnpis	gnpis										
-go	Gene Ontology	http://geneontology.org/	The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.	^\d{7}$	0032571	suzia@stanford.edu	http://amigo.geneontology.org/amigo/term/GO:$1			gobp|gobpid|gocc|goccid|gomf|gomfid	False	GO	GO	GO	GO					1176	go	go	go	go	GO		go	GO	P686			
-go.model	Gene Ontology Causal Assembly Model	http://www.geneontology.org/gocam	GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform.		5fce9b7300001250		http://noctua.geneontology.org/editor/graph/gomodel:$1				False																					
-go.ref	Gene Ontology Database references	http://www.geneontology.org/cgi-bin/references.cgi	"The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of ""GO content"" meetings at which substantial changes in the ontologies are discussed and made."	^\d{7}$	0000041		https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-$1.md				False			GO_REF							go_ref	go.ref										
-go.resource	Gene Ontology Registry	http://geneontology.org/	A database-specific registry supporting curation in the Gene Ontology		CHEBI		https://bioregistry.io/metaregistry/go/$1				False																					
-goa	Gene Ontology Annotation Database	https://www.ebi.ac.uk/GOA/	The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.	^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$	P12345		https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1				False			GOA							goa	goa					goa				uniprot	
-goche	GO Chemicals	https://github.com/geneontology/go-ontology	Represent chemical entities having particular CHEBI roles	^\d+$	25512			https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/imports/chebi_roles.owl		go.chebi|go.chemical|go.chemicals	False																					
-goeco	GO Evidence Code	http://geneontology.org/docs/guide-go-evidence-codes/	A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported.		IPI						False																					
-gold	Genomes Online Database	https://gold.jgi.doe.gov/	The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.	^[A-Z][a-z][0-9]+$	Gs0000008		https://gold.jgi.doe.gov/resolver?id=$1				False										gold						gold					
+Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"	^\d{7}$	0000632	mhb120@gmail.com	http://purl.obolibrary.org/obo/GENO_$1		https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo		False	GENO		GENO	GENO								geno	geno	GENO								
+genpept	GenPept	https://www.ncbi.nlm.nih.gov/protein	The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.	^\w{3}\d{5}(\.\d+)?$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept				False			GENPEPT							genpept	genpept											
+genprop	Genome Properties	https://www.ebi.ac.uk/interpro/genomeproperties/	Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.	^GenProp\d+$	GenProp0699		https://www.ebi.ac.uk/interpro/genomeproperties/#$1				False			GENPROP							genprop	genprop											
+geo	NCBI Gene Expression Omnibus	https://www.ncbi.nlm.nih.gov/geo/	The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.	^G(PL|SM|SE|DS)\d+$	GDS1234		https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1				False	GEO		GEO		GEO				1147	geo	geo					geo						
+geogeo	Geographical Entity Ontology	https://github.com/ufbmi/geographical-entity-ontology/wiki	"An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction.  We thus distinguish and assign different identifiers to the US in ""The US declared war on Germany"" vs. the US in ""The plane entered US airspace""."	^\d{9}$	000000021	hoganwr@gmail.com	http://purl.obolibrary.org/obo/GEO_$1				False			GEO	GEO						geogeo		geo	geo	GEO								
+geonames	GeoNames	https://www.geonames.org	The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.	^\d+$	3532759		https://www.geonames.org/$1			Geomames|Geonamaes	False																	r3d100010245					
+geonames.feature	GeoNames Feature Code	https://www.geonames.org/export/codes.html	All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.		ADM1		https://www.geonames.org/recent-changes/featurecode/$1/				False																						
+gexo	Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Gene Expression Ontology			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/GeXO/gexo.owl	https://www.bio.ntnu.no/ontology/GeXO/gexo.obo		False	GEXO			GEXO									gexo									
+ghr	Genetics Home Reference	https://medlineplus.gov/genetics/condition	MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA).		saddan		https://medlineplus.gov/genetics/condition/$1				False																						
+giardiadb	GiardiaDB	https://giardiadb.org/giardiadb/	GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	GL50803_102438		https://giardiadb.org/giardiadb/app/record/gene/$1				False			GIARDIADB							giardiadb	giardiadb					giardiadb	r3d100012458					
+github	github	https://github.com/	GitHub is an online host of Git source code repositories.	^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$	biopragmatics/bioregistry		https://github.com/$1				False										github							r3d100010375					
+github.issue	GitHub Issue	https://github.com/	An issue in any public repository on GitHub.		biopragmatics/bioregistry/424		https://bioregistry.io/resolve/github/issue/$1				False																						
+github.pull	GitHub Pull Request	https://github.com/	A pull request in any public repository on GitHub.		biopragmatics/bioregistry/416		https://bioregistry.io/resolve/github/pull/$1				False																						
+gitlab	GitLab	https://gitlab.com/	GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.	^.*/.*$	morpheus.lab/morpheus		https://gitlab.com/$1				False										gitlab												
+glida.gpcr	GLIDA GPCR	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.	^[A-Z-_0-9]+$	ACM1_HUMAN		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1				False			GLIDA.GPCR							glida.gpcr	glida.gpcr											
+glida.ligand	GLIDA Ligand	http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/	The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.	^L\d+$	L000001		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1				False			GLIDA.LIGAND							glida.ligand	glida.ligand											
+glycoepitope	GlycoEpitope	https://www.glycoepitope.jp/epitopes/	GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.	^EP\d{4}$	EP0311		https://www.glycoepitope.jp/epitopes/$1				False			GLYCOEPITOPE							glycoepitope	glycoepitope											
+glycomedb	GlycomeDB	https://glytoucan.org/	GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.	^\w+$	G77500AY		https://glytoucan.org/Structures/Glycans/$1				False			GLYCOMEDB						2664	glycomedb	glycomedb					glycomedb	r3d100011527					glytoucan
+glyconavi	GlycoNAVI	https://www.noguchi.or.jp/	"GlycoNAVI is a website for carbohydrate research. It consists of the ""GlycoNAVI Database"" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the ""GlycoNAVI tools"" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."	^GN_[A-Za-z0-9_:]+$	GN_G03681DA		https://glyconavi.org/hub/?id=$1				False										glyconavi												
+glycopost	GlycoPOST	https://glycopost.glycosmos.org	"GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their ""raw/processed"" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."	^GPST[0-9]{6}$	GPST000024		https://glycopost.glycosmos.org/entry/$1				False										glycopost												
+glygen	Computational and Informatics Resources for Glycoscience	https://glygen.org/glycan/	GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data.		G24361QY		https://glygen.org/glycan/$1				False																		GlyGen				
+glytoucan	GlyTouCan	https://glytoucan.org	GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.	^G[0-9]{5}[A-Z]{2}$	G00054MO		https://glytoucan.org/Structures/Glycans/$1				False			GLYTOUCAN							glytoucan	glytoucan						r3d100012388					
+gmd	Golm Metabolome Database	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	68513255-fc44-4041-bc4b-4fd2fae7541d		http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx				False			GMD							gmd	gmd											
+gmd.analyte	Golm Metabolome Database Analyte	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	4f0fa9b6-514f-4ff4-98cc-0009bc08eb80		http://gmd.mpimp-golm.mpg.de/Analytes/$1				False			GMD.ANALYTE							gmd.analyte	gmd.analyte											
+gmd.gcms	Golm Metabolome Database GC-MS spectra	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	53d583d8-40c6-40e1-9296-23f821cd77a5		http://gmd.mpimp-golm.mpg.de/Spectrums/$1				False			GMD.GCMS							gmd.gcms	gmd.gcms											
+gmd.profile	Golm Metabolome Database Profile	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	10b38aaf-b977-4950-85b8-f4775f66658d		http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1				False			GMD.PROFILE							gmd.profile	gmd.profile											
+gmd.ref	Golm Metabolome Database Reference Substance	http://gmd.mpimp-golm.mpg.de/	Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	8cf84adb-b4db-4807-ac98-0004247c35df		http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1				False			GMD.REF							gmd.ref	gmd.ref											
+gmelin	Gmelins Handbuch der anorganischen Chemie	https://link.springer.com/bookseries/562	The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s.	^[1-9][0-9]{3,6}$	1466						False									1004										P1578			
+gno	Glycan Naming and Subsumption Ontology	https://gnome.glyomics.org/	An ontology for glycans based on GlyTouCan, but organized by subsumption.	^\d{8}$	10004892	nje5@georgetown.edu	http://purl.obolibrary.org/obo/GNO_$1				False	GNO			GNO								gno	gno	GNO								
+gnpis	GnpIS	https://urgi.versailles.inra.fr/gnpis/	GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.	^[A-Za-z0-9]+$	AY109603		https://urgi.versailles.inra.fr/gnpis/#result/term=$1				False			GNPIS							gnpis	gnpis						r3d100012647					
+go	Gene Ontology	http://geneontology.org/	The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.	^\d{7}$	0032571	suzia@stanford.edu	http://amigo.geneontology.org/amigo/term/GO:$1			gobp|gobpid|gocc|goccid|gomf|gomfid	False	GO	GO	GO	GO					1176	go	go	go	go	GO		go		GO	P686			
+go.model	Gene Ontology Causal Assembly Model	http://www.geneontology.org/gocam	GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform.		5fce9b7300001250		http://noctua.geneontology.org/editor/graph/gomodel:$1				False																						
+go.ref	Gene Ontology Database references	http://www.geneontology.org/cgi-bin/references.cgi	"The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of ""GO content"" meetings at which substantial changes in the ontologies are discussed and made."	^\d{7}$	0000041		https://github.com/geneontology/go-site/blob/master/metadata/gorefs/goref-$1.md				False			GO_REF							go_ref	go.ref											
+go.resource	Gene Ontology Registry	http://geneontology.org/	A database-specific registry supporting curation in the Gene Ontology		CHEBI		https://bioregistry.io/metaregistry/go/$1				False																						
+goa	Gene Ontology Annotation Database	https://www.ebi.ac.uk/GOA/	The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.	^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$	P12345		https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1				False			GOA							goa	goa					goa					uniprot	
+goche	GO Chemicals	https://github.com/geneontology/go-ontology	Represent chemical entities having particular CHEBI roles	^\d+$	25512			https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/imports/chebi_roles.owl		go.chebi|go.chemical|go.chemicals	False																						
+goeco	GO Evidence Code	http://geneontology.org/docs/guide-go-evidence-codes/	A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported.		IPI						False																						
+gold	Genomes Online Database	https://gold.jgi.doe.gov/	The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.	^[A-Z][a-z][0-9]+$	Gs0000008		https://gold.jgi.doe.gov/resolver?id=$1				False										gold						gold						
 gold.genome	GOLD genome	http://www.genomesonline.org/cgi-bin/GOLD/index.cgi	"- DEPRECATION NOTE -
 Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.
 
-The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."	^(Gi|Gc)\d+$	Gi07796		http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1				False			GOLD.GENOME							gold.genome	gold.genome										
+The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."	^(Gi|Gc)\d+$	Gi07796		http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1				False			GOLD.GENOME							gold.genome	gold.genome											
 gold.meta	GOLD metadata	http://www.genomesonline.org/cgi-bin/GOLD/index.cgi	"- DEPRECATION NOTE -
 Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. 
 
-The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."	^Gm\d+$	Gm00047		http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1				False			GOLD.META							gold.meta	gold.meta										
-google.patent	Google Patents	https://www.google.com/patents/	Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.	^[A-Z]{2,4}\d+([A-Z])?([0-9])?$	US4145692		https://www.google.com/patents/$1			patent	False			GOOGLE.PATENT		Patent					google.patent	google.patent										
-google.scholar	Google Scholar Researcher	https://scholar.google.com/	Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites.		PjrpzUIAAAAJ						False																					
-gorel	GO Relations	http://geneontology.org/docs/ontology-relations/	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.	^\d{7}$	0002005			ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl			False																					
-gpcrdb	G protein-coupled receptor database	http://www.gpcrdb.org/	The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.	^\w+$	RL3R1_HUMAN		https://gpcrdb.org/protein/$1				False			GPCRDB							gpcrdb	gpcrdb					gpcrdb	GPCRDB				
-gpmdb	Global Proteome Machine Database	http://gpmdb.thegpm.org/	The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.	^GPM\d+$	GPM32310002988		http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1				False			GPMDB							gpmdb	gpmdb										
-graingenes.reference	GrainGenes	http://wheat.pw.usda.gov	A database for Triticeae and Avena references.		WGS-95-1333		https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1				False																					
-graingenes.symbol	GrainGenes	http://wheat.pw.usda.gov	A database for Triticeae and Avena gene symbols.		1-FEH+w3		http://wheat.pw.usda.gov/report?class=gene;name=$1				False																					
-gramene.gene	Gramene Gene	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.	^GR\:\d+$	GR:0080039		http://www.gramene.org/db/genes/search_gene?acc=$1			GR_GENE	False			GRAMENE.GENE							gramene.gene	gramene.gene										
-gramene.growthstage	Gramene Growth Stage Ontology	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.	^\d{7}$	0007133		http://www.gramene.org/db/ontology/search?id=GRO:$1				False			GRAMENE.GROWTHSTAGE							gramene.growthstage	gramene.growthstage										
-gramene.protein	Gramene protein	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.	^\d+$	78073		http://www.gramene.org/db/protein/protein_search?protein_id=$1			GR_PROTEIN	False			GRAMENE.PROTEIN							gramene.protein	gramene.protein										
-gramene.qtl	Gramene QTL	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.	^\w+$	CQG5		http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1			GR_QTL	False			GRAMENE.QTL							gramene.qtl	gramene.qtl										
-gramene.reference	Gramene Reference	http://www.gramene.org	Literature references in Gramene	^\d+$	6200		http://www.gramene.org/db/literature/pub_search?ref_id=$1			gramene.ref	False																					
-gramene.taxonomy	Gramene Taxonomy	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.	^GR\_tax\:\d+$	GR_tax:013681		http://www.gramene.org/db/ontology/search?id=$1				False			GRAMENE.TAXONOMY							gramene.taxonomy	gramene.taxonomy										
-grassbase	GrassBase	https://www.kew.org/data/grasses-syn/index.htm	GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species.	^(imp|gen)\d{5}$	imp10873		https://www.kew.org/data/grasses-db/www/$1				False																		P1832			
-greengenes	16S rRNA gene database	http://greengenes.lbl.gov/	A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.	^\d+$	100000		http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1				False			GREENGENES							greengenes	greengenes					greengenes					
-grid	Global Research Identifier Database	https://www.grid.ac/	International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.	^grid\.[0-9]+\.[a-f0-9]{1,2}$	grid.225360.0		https://www.grid.ac/institutes/$1				False			GRID							grid	grid										
-grin.taxonomy	Germplasm Resources Information Network	http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en	GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.	^\d+$	19333		http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1				False			GRIN.TAXONOMY							grin.taxonomy	grin.taxonomy										
-gro	Gene Regulation Ontology										True	GRO			GRO																	
-grsdb	G-Rich Sequences Database	http://bioinformatics.ramapo.edu/GRSDB2/	GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.	^\d+$	10142		http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1				False			GRSDB							grsdb	grsdb					grsdb					
-gsfa	General Standard for Food Additives Online Database	http://www.fao.org/gsfaonline	"The ""Codex General Standard for Food Additives"" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."	^\d+$	174		http://www.fao.org/gsfaonline/additives/details.html?id=$1			FAO/WHO_standards	False																					
-gsso	Gender, Sex, and Sexual Orientation Ontology	https://gsso.research.cchmc.org/	The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.	^\d{6}$	002368	kronkcj@mail.uc.edu	http://purl.obolibrary.org/obo/GSSO_$1				False	GSSO			GSSO						gsso		gsso	gsso	GSSO							
-gtex	Genotype-Tissue Expression	https://www.gtexportal.org	The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.	^\w.+$	BRIP1		https://www.gtexportal.org/home/gene/$1				False			GTEX							gtex	gtex										
-gtr	Genetic Testing Registry	https://www.ncbi.nlm.nih.gov/gtr/	The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease		AN0097748		https://www.ncbi.nlm.nih.gov/gtr/conditions/$1			medgen.gtr	False																					
-gudmap	Genitourinary Development Molecular Anatomy Project	http://www.gudmap.org/	The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958		https://gudmap.org/id/$1				False			GUDMAP							gudmap	gudmap										
-gwascentral.marker	GWAS Central Marker	https://www.gwascentral.org/markers	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.	^HGVM\d+$	HGVM15354		https://www.gwascentral.org/marker/$1				False			GWASCENTRAL.MARKER							gwascentral.marker	gwascentral.marker										
-gwascentral.phenotype	GWAS Central Phenotype	https://www.gwascentral.org/phenotypes	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.	^HGVPM\d+$	HGVPM623		https://www.gwascentral.org/phenotype/$1				False			GWASCENTRAL.PHENOTYPE							gwascentral.phenotype	gwascentral.phenotype										
-gwascentral.study	GWAS Central Study	https://www.gwascentral.org/studies	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.	^HGVST\d+$	HGVST1828		https://www.gwascentral.org/study/$1				False			GWASCENTRAL.STUDY							gwascentral.study	gwascentral.study										
-gxa.expt	GXA Expt	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.	^[AEP]-\w{4}-\d+$	E-MTAB-2037		https://www.ebi.ac.uk/gxa/experiments/$1				False			GXA.EXPT							gxa.expt	gxa.expt										
-gxa.gene	GXA Gene	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.	^\w+$	AT4G01080		https://www.ebi.ac.uk/gxa/genes/$1				False			GXA.GENE							gxa.gene	gxa.gene										
-habronattus	Habronattus courtship	http://www.mesquiteproject.org/ontology/Habronattus/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/HABRONATTUS_$1				True			HABRONATTUS									habronattus									
-hamap	High-quality Automated and Manual Annotation of microbial Proteomes	https://hamap.expasy.org/	HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.	^MF_\d+$	MF_01400		https://hamap.expasy.org/unirule/$1				False			HAMAP						2766	hamap	hamap					hamap	HAMAP				
-hancestro	Human Ancestry Ontology	https://github.com/EBISPOT/ancestro	Human ancestry ontology for the NHGRI GWAS Catalog	^\d{4}$	0290	danielle.welter@uni.lu	http://purl.obolibrary.org/obo/HANCESTRO_$1				False	HANCESTRO			HANCESTRO								hancestro	hancestro	HANCESTRO							
-hao	Hymenoptera Anatomy Ontology	http://hymao.org	A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)	^\d{7}$	0000187	diapriid@gmail.com	http://purl.obolibrary.org/obo/HAO_$1				False	HAO		HAO	HAO								hao	hao	HAO							
-hba	Human Brain Atlas	https://human.brain-map.org	A controlled vocabulary to support the study of transcription in the human brain	^\d+$	4005				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-hba.obo		False																					
-hcao	Human Cell Atlas Ontology	https://www.humancellatlas.org	Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.								False													hcao								
-hcpcs	Healthcare Common Procedure Coding System	https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo	HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers.		G8944						False	HCPCS			HCPCS																	
-hcvdb	Hepatitis C Virus Database	http://euhcvdb.ibcp.fr	the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.	^M\d{5}$	M58335		https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1				False			HCVDB							hcvdb	hcvdb										
-hdr	Homeodomain Research	http://research.nhgri.nih.gov/apps/homeodomain/web/	The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.	^\d+$	63		http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1				False			HDR							hdr	hdr					hdr					
-hgmd	Human Gene Mutation Database	http://www.hgmd.cf.ac.uk/ac/index.php	The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.	^[A-Z_0-9]+$	CALM1		http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1				False			HGMD						3265	hgmd	hgmd										
-hgnc	HUGO Gene Nomenclature Committee	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.	^((HGNC|hgnc):)?\d{1,5}$	16793		https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1				False	HGNC		HGNC	HGNC	HGNC				2298	hgnc	hgnc					hgnc	HGNC	P354			
-hgnc.genefamily	HGNC gene family	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	2029		https://www.genenames.org/cgi-bin/genefamilies/set/$1			GFAM|HGNC_GROUP|hgnc.family	False			HGNC.GENEFAMILY							hgnc.genefamily	hgnc.genefamily										hgnc.genegroup
-hgnc.genegroup	HGNC Gene Group	https://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	141		https://www.genenames.org/cgi-bin/genefamilies/set/$1				False										hgnc.genegroup											
-hgnc.symbol	HGNC Symbol	https://www.genenames.org/	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.	^[A-Za-z-0-9_]+(\@)?$	DAPK1		https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1				False			HGNC.SYMBOL							hgnc.symbol	hgnc.symbol										
-hinv.locus	H-InvDb Locus	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.	^HIX\d{7}(\.\d+)?$	HIX0004394		http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1				False			HINV.LOCUS							hinv.locus	hinv.locus										
-hinv.protein	H-InvDb Protein	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.	^HIP\d{9}(\.\d+)?$	HIP000030660		http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1				False			HINV.PROTEIN							hinv.protein	hinv.protein										
-hinv.transcript	H-InvDb Transcript	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.	^HIT\d{9}(\.\d+)?$	HIT000195363		http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1				False			HINV.TRANSCRIPT							hinv.transcript	hinv.transcript										
-hipsci	Human Induced Pluripotent Stem Cells Initiative	http://www.hipsci.org	Cell line databases/resources		HPSI0114i-bezi_1		http://www.hipsci.org/lines/#/lines/$1				False					HipSci																
-hivreagentprogram	NIH HIV Reagent Program	https://www.hivreagentprogram.org/Home.aspx	Cell line collections		ARP-1513		https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx				False					HIVReagentProgram																
-hmdb	Human Metabolome Database	http://www.hmdb.ca/	The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.	^HMDB\d+$	HMDB00001		http://www.hmdb.ca/metabolites/$1			HMDB	False			HMDB			000408			2622	hmdb	hmdb					hmdb		P2057			
-hms.lincs.compound	HMS LINCS Compound	https://lincs.hms.harvard.edu/db/sm/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.		10001-101		https://lincs.hms.harvard.edu/db/sm/$1			HMS-LINCS|hmsl_id	False																					
-hog	Homologous Organ Groups	https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships	Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.	^\d{7}$	0000255				ftp://ftp.bgee.org/general/ontologies/HOG.obo		False																					
-hogenom	Database of Complete Genome Homologous Genes Families	http://pbil.univ-lyon1.fr/databases/hogenom/	HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.	^\w+$	HBG284870		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1				False			HOGENOM							hogenom	hogenom					hogenom	HOGENOM				
-hom	Homology Ontology	https://github.com/BgeeDB/homology-ontology	This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.	^\d{7}$	0000049	bgee@sib.swiss	http://purl.obolibrary.org/obo/HOM_$1				False	HOM		HOM	HOM								hom	hom	HOM							
-homd.seq	HOMD Sequence Metainformation	http://www.homd.org/index.php	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.	^SEQF\d+$	SEQF1003		http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1				False			HOMD.SEQ							homd.seq	homd.seq					homd.seq					
-homd.taxon	HOMD Taxonomy	http://www.homd.org/index.php	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.	^\d+$	811		www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1				False			HOMD.TAXON							homd.taxon	homd.taxon					homd.taxon					
-homologene	HomoloGene	https://www.ncbi.nlm.nih.gov/homologene/	HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.	^\d+$	1000		https://www.ncbi.nlm.nih.gov/homologene/$1				False			HOMOLOGENE							homologene	homologene					homologene		P593			
-horizon_discovery	Horizon Discovery cell line collection	https://horizondiscovery.com/	Cell line collections		HD+118-001		https://horizondiscovery.com/en/search?searchterm=$1				False					Horizon_Discovery																
-hovergen	Homologous Vertebrate Genes Database	https://pbil.univ-lyon1.fr/databases/hovergen.php	HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.	^HBG\d+$	HBG004341		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN				False			HOVERGEN							hovergen	hovergen					hovergen					
-hp	Human Phenotype Ontology	http://www.human-phenotype-ontology.org/	The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.	^\d{7}$	0011140	dr.sebastian.koehler@gmail.com	https://hpo.jax.org/app/browse/term/HP:$1		http://purl.obolibrary.org/obo/hp.obo	hpo	False	HP_O		HPO	HP_O						hp	hp	hp	hp	HP				P3841			
-hpa	Human Protein Atlas tissue profile information	http://www.proteinatlas.org/	The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.	^ENSG\d{11}$	ENSG00000026508		http://www.proteinatlas.org/$1				False			HPA							hpa	hpa					hpa	HPA				
-hpath	Histopathology Ontology	https://github.com/Novartis/hpath	An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.	^\d+$	2000191					MC	False													hpath								
-hpm.peptide	Human Proteome Map Peptide	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.	^\d+$	9606117		http://www.humanproteomemap.org/spectrum.php?pep_id=$1				False			HPM.PEPTIDE							hpm.peptide	hpm.peptide										
-hpm.protein	Human Proteome Map Protein	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.	^\d+$	1968		http://www.humanproteomemap.org/protein.php?hpm_id=$1				False			HPM.PROTEIN							hpm.protein	hpm.protein										
-hprd	Human Protein Reference Database	http://www.hprd.org/	The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.	^\d+$	00001		http://www.hprd.org/protein/$1				False			HPRD							hprd	hprd					hprd					
-hpscreg	Human Pluripotent Stem Cell Registry	https://hpscreg.eu/	hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).	^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$	BCRTi001-A		https://hpscreg.eu/cell-line/$1				False					hPSCreg					hpscreg	hpscreg										
-hsapdv	Human Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv	Life cycle stages for Human	^\d{7}$	0000194	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/HSAPDV_$1			HsapDv	False	HSAPDV		HSAPDV	HSAPDV								hsapdv	hsapdv	HSAPDV							
-hsdb	Hazardous Substances Data Bank	https://pubchem.ncbi.nlm.nih.gov/source/hsdb	The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas.	^\d+$	5621		https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1				False																		P2062			
-hso	Health Surveillance Ontology	https://w3id.org/hso	"The health Surveillance Ontology (HSO) focuses on ""surveillance system level data"", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."	^\d{7}$	0000062	fernanda.dorea@sva.se	http://purl.obolibrary.org/obo/HSO_$1				False	HSO			HSO								hso	hso	HSO							
-hssp	Database of homology-derived secondary structure of proteins	http://swift.cmbi.kun.nl/swift/hssp/	HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.	^\w{4}$	102l		ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2				False			HSSP							hssp	hssp					hssp					
-htn	Hypertension Ontology	https://github.com/aellenhicks/htn_owl	An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines	^\d{8}$	00000014	aellenhicks@gmail.com	http://purl.obolibrary.org/obo/HTN_$1				False	HTN			HTN								htn	htn	HTN							
-huge	Human Unidentified Gene-Encoded	http://www.kazusa.or.jp/huge/	The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^KIAA\d{4}$	KIAA0001		https://www.kazusa.or.jp/huge/gfpage/$1				False			HUGE							huge	huge					huge	HUGE				
-iao	Information Artifact Ontology	https://github.com/information-artifact-ontology/IAO/	An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.	^\d{7}$	0000030	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/IAO_$1				False	IAO		IAO	IAO						iao	iao	iao	iao	IAO							
-icd10	International Classification of Diseases, 10th Revision	https://icd.who.int/browse10	The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.	^[A-Z]\d+(\.[-\d+])?$	C34		http://apps.who.int/classifications/icd10/browse/2010/en#/$1			ICD|ICD-10|ICD10	False	ICD10		ICD	ICD10					2611	icd	icd					icd		P494			
-icd10cm	International Classification of Diseases, 10th Revision, Clinical Modification	https://www.icd10data.com/ICD10CM	ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.		F4521		https://icd.codes/icd10cm/$1			ICD10CM	False	ICD10CM			ICD10CM														P4229			
+The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."	^Gm\d+$	Gm00047		http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1				False			GOLD.META							gold.meta	gold.meta											
+google.patent	Google Patents	https://www.google.com/patents/	Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.	^[A-Z]{2,4}\d+([A-Z])?([0-9])?$	US4145692		https://www.google.com/patents/$1			patent	False			GOOGLE.PATENT		Patent					google.patent	google.patent											
+google.scholar	Google Scholar Researcher	https://scholar.google.com/	Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites.		PjrpzUIAAAAJ						False																						
+gorel	GO Relations	http://geneontology.org/docs/ontology-relations/	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.	^\d{7}$	0002005			ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl			False																						
+gpcrdb	G protein-coupled receptor database	http://www.gpcrdb.org/	The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.	^\w+$	RL3R1_HUMAN		https://gpcrdb.org/protein/$1				False			GPCRDB							gpcrdb	gpcrdb					gpcrdb		GPCRDB				
+gpmdb	Global Proteome Machine Database	http://gpmdb.thegpm.org/	The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.	^GPM\d+$	GPM32310002988		http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1				False			GPMDB							gpmdb	gpmdb											
+graingenes.reference	GrainGenes	http://wheat.pw.usda.gov	A database for Triticeae and Avena references.		WGS-95-1333		https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1				False																						
+graingenes.symbol	GrainGenes	http://wheat.pw.usda.gov	A database for Triticeae and Avena gene symbols.		1-FEH+w3		http://wheat.pw.usda.gov/report?class=gene;name=$1				False																						
+gramene.gene	Gramene Gene	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.	^GR\:\d+$	GR:0080039		http://www.gramene.org/db/genes/search_gene?acc=$1			GR_GENE	False			GRAMENE.GENE							gramene.gene	gramene.gene											
+gramene.growthstage	Gramene Growth Stage Ontology	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.	^\d{7}$	0007133		http://www.gramene.org/db/ontology/search?id=GRO:$1				False			GRAMENE.GROWTHSTAGE							gramene.growthstage	gramene.growthstage											
+gramene.protein	Gramene protein	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.	^\d+$	78073		http://www.gramene.org/db/protein/protein_search?protein_id=$1			GR_PROTEIN	False			GRAMENE.PROTEIN							gramene.protein	gramene.protein											
+gramene.qtl	Gramene QTL	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.	^\w+$	CQG5		http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1			GR_QTL	False			GRAMENE.QTL							gramene.qtl	gramene.qtl											
+gramene.reference	Gramene Reference	http://www.gramene.org	Literature references in Gramene	^\d+$	6200		http://www.gramene.org/db/literature/pub_search?ref_id=$1			gramene.ref	False																						
+gramene.taxonomy	Gramene Taxonomy	http://www.gramene.org/	Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.	^GR\_tax\:\d+$	GR_tax:013681		http://www.gramene.org/db/ontology/search?id=$1				False			GRAMENE.TAXONOMY							gramene.taxonomy	gramene.taxonomy											
+grassbase	GrassBase	https://www.kew.org/data/grasses-syn/index.htm	GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species.	^(imp|gen)\d{5}$	imp10873		https://www.kew.org/data/grasses-db/www/$1				False																			P1832			
+greengenes	16S rRNA gene database	http://greengenes.lbl.gov/	A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.	^\d+$	100000		http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1				False			GREENGENES							greengenes	greengenes					greengenes	r3d100010549					
+grid	Global Research Identifier Database	https://www.grid.ac/	International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.	^grid\.[0-9]+\.[a-f0-9]{1,2}$	grid.225360.0		https://www.grid.ac/institutes/$1				False			GRID							grid	grid											
+grin.taxonomy	Germplasm Resources Information Network	http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en	GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.	^\d+$	19333		http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1				False			GRIN.TAXONOMY							grin.taxonomy	grin.taxonomy											
+gro	Gene Regulation Ontology										True	GRO			GRO																		
+grsdb	G-Rich Sequences Database	http://bioinformatics.ramapo.edu/GRSDB2/	GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.	^\d+$	10142		http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1				False			GRSDB							grsdb	grsdb					grsdb						
+gsfa	General Standard for Food Additives Online Database	http://www.fao.org/gsfaonline	"The ""Codex General Standard for Food Additives"" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."	^\d+$	174		http://www.fao.org/gsfaonline/additives/details.html?id=$1			FAO/WHO_standards	False																						
+gsso	Gender, Sex, and Sexual Orientation Ontology	https://gsso.research.cchmc.org/	The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.	^\d{6}$	002368	kronkcj@mail.uc.edu	http://purl.obolibrary.org/obo/GSSO_$1				False	GSSO			GSSO						gsso		gsso	gsso	GSSO								
+gtex	Genotype-Tissue Expression	https://www.gtexportal.org	The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.	^\w.+$	BRIP1		https://www.gtexportal.org/home/gene/$1				False			GTEX							gtex	gtex											
+gtr	Genetic Testing Registry	https://www.ncbi.nlm.nih.gov/gtr/	The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease		AN0097748		https://www.ncbi.nlm.nih.gov/gtr/conditions/$1			medgen.gtr	False																						
+gudmap	Genitourinary Development Molecular Anatomy Project	http://www.gudmap.org/	The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958		https://gudmap.org/id/$1				False			GUDMAP							gudmap	gudmap						r3d100012193					
+gwascentral.marker	GWAS Central Marker	https://www.gwascentral.org/markers	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.	^HGVM\d+$	HGVM15354		https://www.gwascentral.org/marker/$1				False			GWASCENTRAL.MARKER							gwascentral.marker	gwascentral.marker											
+gwascentral.phenotype	GWAS Central Phenotype	https://www.gwascentral.org/phenotypes	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.	^HGVPM\d+$	HGVPM623		https://www.gwascentral.org/phenotype/$1				False			GWASCENTRAL.PHENOTYPE							gwascentral.phenotype	gwascentral.phenotype											
+gwascentral.study	GWAS Central Study	https://www.gwascentral.org/studies	GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.	^HGVST\d+$	HGVST1828		https://www.gwascentral.org/study/$1				False			GWASCENTRAL.STUDY							gwascentral.study	gwascentral.study											
+gxa.expt	GXA Expt	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.	^[AEP]-\w{4}-\d+$	E-MTAB-2037		https://www.ebi.ac.uk/gxa/experiments/$1				False			GXA.EXPT							gxa.expt	gxa.expt											
+gxa.gene	GXA Gene	https://www.ebi.ac.uk/gxa/	The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.	^\w+$	AT4G01080		https://www.ebi.ac.uk/gxa/genes/$1				False			GXA.GENE							gxa.gene	gxa.gene											
+habronattus	Habronattus courtship	http://www.mesquiteproject.org/ontology/Habronattus/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/HABRONATTUS_$1				True			HABRONATTUS									habronattus										
+hamap	High-quality Automated and Manual Annotation of microbial Proteomes	https://hamap.expasy.org/	HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.	^MF_\d+$	MF_01400		https://hamap.expasy.org/unirule/$1				False			HAMAP						2766	hamap	hamap					hamap		HAMAP				
+hancestro	Human Ancestry Ontology	https://github.com/EBISPOT/ancestro	Human ancestry ontology for the NHGRI GWAS Catalog	^\d{4}$	0290	danielle.welter@uni.lu	http://purl.obolibrary.org/obo/HANCESTRO_$1				False	HANCESTRO			HANCESTRO								hancestro	hancestro	HANCESTRO								
+hao	Hymenoptera Anatomy Ontology	http://hymao.org	A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)	^\d{7}$	0000187	diapriid@gmail.com	http://purl.obolibrary.org/obo/HAO_$1				False	HAO		HAO	HAO								hao	hao	HAO								
+hba	Human Brain Atlas	https://human.brain-map.org	A controlled vocabulary to support the study of transcription in the human brain	^\d+$	4005				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-hba.obo		False																						
+hcao	Human Cell Atlas Ontology	https://www.humancellatlas.org	Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.								False													hcao									
+hcpcs	Healthcare Common Procedure Coding System	https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo	HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers.		G8944						False	HCPCS			HCPCS																		
+hcvdb	Hepatitis C Virus Database	http://euhcvdb.ibcp.fr	the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.	^M\d{5}$	M58335		https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1				False			HCVDB							hcvdb	hcvdb											
+hdr	Homeodomain Research	http://research.nhgri.nih.gov/apps/homeodomain/web/	The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.	^\d+$	63		http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp;view=proteins&amp;id=$1				False			HDR							hdr	hdr					hdr						
+hgmd	Human Gene Mutation Database	http://www.hgmd.cf.ac.uk/ac/index.php	The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.	^[A-Z_0-9]+$	CALM1		http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1				False			HGMD						3265	hgmd	hgmd											
+hgnc	HUGO Gene Nomenclature Committee	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.	^((HGNC|hgnc):)?\d{1,5}$	16793		https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1				False	HGNC		HGNC	HGNC	HGNC				2298	hgnc	hgnc					hgnc		HGNC	P354			
+hgnc.genefamily	HGNC gene family	http://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	2029		https://www.genenames.org/cgi-bin/genefamilies/set/$1			GFAM|HGNC_GROUP|hgnc.family	False			HGNC.GENEFAMILY							hgnc.genefamily	hgnc.genefamily											hgnc.genegroup
+hgnc.genegroup	HGNC Gene Group	https://www.genenames.org	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.	^\d+$	141		https://www.genenames.org/cgi-bin/genefamilies/set/$1				False										hgnc.genegroup												
+hgnc.symbol	HGNC Symbol	https://www.genenames.org/	The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.	^[A-Za-z-0-9_]+(\@)?$	DAPK1		https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1				False			HGNC.SYMBOL							hgnc.symbol	hgnc.symbol											
+hinv.locus	H-InvDb Locus	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.	^HIX\d{7}(\.\d+)?$	HIX0004394		http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1				False			HINV.LOCUS							hinv.locus	hinv.locus											
+hinv.protein	H-InvDb Protein	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.	^HIP\d{9}(\.\d+)?$	HIP000030660		http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1				False			HINV.PROTEIN							hinv.protein	hinv.protein											
+hinv.transcript	H-InvDb Transcript	http://h-invitational.jp/hinv/ahg-db/index.jsp	H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.	^HIT\d{9}(\.\d+)?$	HIT000195363		http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1				False			HINV.TRANSCRIPT							hinv.transcript	hinv.transcript											
+hipsci	Human Induced Pluripotent Stem Cells Initiative	http://www.hipsci.org	Cell line databases/resources		HPSI0114i-bezi_1		http://www.hipsci.org/lines/#/lines/$1				False					HipSci																	
+hivreagentprogram	NIH HIV Reagent Program	https://www.hivreagentprogram.org/Home.aspx	Cell line collections		ARP-1513		https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx				False					HIVReagentProgram																	
+hmdb	Human Metabolome Database	http://www.hmdb.ca/	The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.	^HMDB\d+$	HMDB00001		http://www.hmdb.ca/metabolites/$1			HMDB	False			HMDB			000408			2622	hmdb	hmdb					hmdb			P2057			
+hms.lincs.compound	HMS LINCS Compound	https://lincs.hms.harvard.edu/db/sm/	Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.		10001-101		https://lincs.hms.harvard.edu/db/sm/$1			HMS-LINCS|hmsl_id	False																						
+hog	Homologous Organ Groups	https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships	Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.	^\d{7}$	0000255				ftp://ftp.bgee.org/general/ontologies/HOG.obo		False																						
+hogenom	Database of Complete Genome Homologous Genes Families	http://pbil.univ-lyon1.fr/databases/hogenom/	HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.	^\w+$	HBG284870		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1				False			HOGENOM							hogenom	hogenom					hogenom		HOGENOM				
+hom	Homology Ontology	https://github.com/BgeeDB/homology-ontology	This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.	^\d{7}$	0000049	bgee@sib.swiss	http://purl.obolibrary.org/obo/HOM_$1				False	HOM		HOM	HOM								hom	hom	HOM								
+homd.seq	HOMD Sequence Metainformation	http://www.homd.org/index.php	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.	^SEQF\d+$	SEQF1003		http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1				False			HOMD.SEQ							homd.seq	homd.seq					homd.seq						
+homd.taxon	HOMD Taxonomy	http://www.homd.org/index.php	The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.	^\d+$	811		www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1				False			HOMD.TAXON							homd.taxon	homd.taxon					homd.taxon						
+homologene	HomoloGene	https://www.ncbi.nlm.nih.gov/homologene/	HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.	^\d+$	1000		https://www.ncbi.nlm.nih.gov/homologene/$1				False			HOMOLOGENE							homologene	homologene					homologene			P593			
+horizon_discovery	Horizon Discovery cell line collection	https://horizondiscovery.com/	Cell line collections		HD+118-001		https://horizondiscovery.com/en/search?searchterm=$1				False					Horizon_Discovery																	
+hovergen	Homologous Vertebrate Genes Database	https://pbil.univ-lyon1.fr/databases/hovergen.php	HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.	^HBG\d+$	HBG004341		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN				False			HOVERGEN							hovergen	hovergen					hovergen						
+hp	Human Phenotype Ontology	http://www.human-phenotype-ontology.org/	The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.	^\d{7}$	0011140	dr.sebastian.koehler@gmail.com	https://hpo.jax.org/app/browse/term/HP:$1		http://purl.obolibrary.org/obo/hp.obo	hpo	False	HP_O		HPO	HP_O						hp	hp	hp	hp	HP					P3841			
+hpa	Human Protein Atlas tissue profile information	http://www.proteinatlas.org/	The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.	^ENSG\d{11}$	ENSG00000026508		http://www.proteinatlas.org/$1				False			HPA							hpa	hpa					hpa		HPA				
+hpath	Histopathology Ontology	https://github.com/Novartis/hpath	An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.	^\d+$	2000191					MC	False													hpath									
+hpm.peptide	Human Proteome Map Peptide	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.	^\d+$	9606117		http://www.humanproteomemap.org/spectrum.php?pep_id=$1				False			HPM.PEPTIDE							hpm.peptide	hpm.peptide											
+hpm.protein	Human Proteome Map Protein	http://www.humanproteomemap.org/index.php	The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.	^\d+$	1968		http://www.humanproteomemap.org/protein.php?hpm_id=$1				False			HPM.PROTEIN							hpm.protein	hpm.protein											
+hprd	Human Protein Reference Database	http://www.hprd.org/	The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.	^\d+$	00001		http://www.hprd.org/protein/$1				False			HPRD							hprd	hprd					hprd						
+hpscreg	Human Pluripotent Stem Cell Registry	https://hpscreg.eu/	hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).	^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$	BCRTi001-A		https://hpscreg.eu/cell-line/$1				False					hPSCreg					hpscreg	hpscreg						r3d100012863					
+hsapdv	Human Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv	Life cycle stages for Human	^\d{7}$	0000194	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/HSAPDV_$1			HsapDv	False	HSAPDV		HSAPDV	HSAPDV								hsapdv	hsapdv	HSAPDV								
+hsdb	Hazardous Substances Data Bank	https://pubchem.ncbi.nlm.nih.gov/source/hsdb	The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas.	^\d+$	5621		https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1				False																			P2062			
+hso	Health Surveillance Ontology	https://w3id.org/hso	"The health Surveillance Ontology (HSO) focuses on ""surveillance system level data"", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."	^\d{7}$	0000062	fernanda.dorea@sva.se	http://purl.obolibrary.org/obo/HSO_$1				False	HSO			HSO								hso	hso	HSO								
+hssp	Database of homology-derived secondary structure of proteins	http://swift.cmbi.kun.nl/swift/hssp/	HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.	^\w{4}$	102l		ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2				False			HSSP							hssp	hssp					hssp						
+htn	Hypertension Ontology	https://github.com/aellenhicks/htn_owl	An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines	^\d{8}$	00000014	aellenhicks@gmail.com	http://purl.obolibrary.org/obo/HTN_$1				False	HTN			HTN								htn	htn	HTN								
+huge	Human Unidentified Gene-Encoded	http://www.kazusa.or.jp/huge/	The Human Unidentified Gene-Encoded (HUGE) protein database contains  results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^KIAA\d{4}$	KIAA0001		https://www.kazusa.or.jp/huge/gfpage/$1				False			HUGE							huge	huge					huge		HUGE				
+iao	Information Artifact Ontology	https://github.com/information-artifact-ontology/IAO/	An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.	^\d{7}$	0000030	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/IAO_$1				False	IAO		IAO	IAO						iao	iao	iao	iao	IAO								
+icd10	International Classification of Diseases, 10th Revision	https://icd.who.int/browse10	The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.	^[A-Z]\d+(\.[-\d+])?$	C34		http://apps.who.int/classifications/icd10/browse/2010/en#/$1			ICD|ICD-10|ICD10	False	ICD10		ICD	ICD10					2611	icd	icd					icd			P494			
+icd10cm	International Classification of Diseases, 10th Revision, Clinical Modification	https://www.icd10data.com/ICD10CM	ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.		F4521		https://icd.codes/icd10cm/$1			ICD10CM	False	ICD10CM			ICD10CM															P4229			
 icd10pcs	International Classification of Diseases, 10th Revision, Procedure Coding System	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS	"ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.
 
-ICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."		01N50ZZ		https://www.findacode.com/code.php?set=ICD10PCS&c=$1				False	ICD10PCS			ICD10PCS														P1690			
-icd11	International Classification of Diseases, 11th Revision	https://icd.who.int/	Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.		RA01.0		https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1			ICD-11	False																		P7807			
-icd9	International Classification of Diseases, 9th Revision	https://www.cdc.gov/nchs/icd/icd9.htm	The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.		277.9		http://www.icd9data.com/getICD9Code.ashx?icd9=$1			ICD9|ICD9_2005|MTHICD9_2006	False																		P493			
-icd9cm	International Classification of Diseases, 9th Revision, Clinical Modification	https://www.cdc.gov/nchs/icd/icd9cm.htm	ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.	^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$	784		http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1			IC9CM|ICD9CM|ICD9CM_2005|ICD9CM_2006|ICDCM_2005	False	ICD9CM			ICD9CM														P1692			
-icdc	Integrated Canine Data Commons	https://caninecommons.cancer.gov/#/	The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.	^\d{6}$	000009		https://caninecommons.cancer.gov/#/study/$1				False										icdc											
-icdo	International Classification of Diseases for Oncology	https://www.who.int/classifications/icd/adaptations/oncology/en/	The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases	^[8-9]\d{3}(/[0-3])?$	9861/3		http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1			ICD-O|ICDO	False	ICDO															icdo		P563			
-iceberg.element	ICEberg element	http://db-mml.sjtu.edu.cn/ICEberg/	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.	^\d+$	100		http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1				False			ICEBERG.ELEMENT							iceberg.element	iceberg.element										
-iceberg.family	ICEberg family	http://db-mml.sjtu.edu.cn/ICEberg/	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.	^\d+$	1		http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1				False			ICEBERG.FAMILY							iceberg.family	iceberg.family										
-iceo	Integrative and Conjugative Element Ontology	https://github.com/ontoice/ICEO	A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.	^\d{7}(_\d)?$	0000712_1	liumeng94@sjtu.edu.cn	http://purl.obolibrary.org/obo/ICEO_$1				False	ICEO			ICEO								iceo	iceo	ICEO							
-icepo	Ion Channel Electrophysiology Ontology	https://download.nextprot.org/pub/current_release/controlled_vocabularies/	The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. 	^\d{7}$	0000002				https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo		False																					
-iclc	Interlab Cell Line Collection	http://www.iclc.it	Cell line collections		ATL98012		http://www.iclc.it/details/det_list.php?line_id=$1				False					ICLC																
-ico	Informed Consent Ontology	https://github.com/ICO-ontology/ICO	The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.	^\d{7}$	0000066	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/ICO_$1				False	ICO		ICO	ICO								ico	ico	ICO							
-ideal	Intrinsically Disordered proteins with Extensive Annotations and Literature	https://www.ideal-db.org	IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.	^IID\d+$	IID00001		http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1				False			IDEAL							ideal	ideal						IDEAL				
-ido	Infectious Disease Ontology	http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology	Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.	^[0-9]+$	0000504	Lindsay.Cowell@utsouthwestern.edu	https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1				False	IDO		IDO	IDO						ido	ido	ido	ido	IDO							
-idocovid19	The COVID-19 Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-covid-19	The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.	^\d{7}$	0001191	johnbeverley2021@u.northwestern.edu					False	IDO-COVID-19			IDO-COVID-19									idocovid19								
-idoden	Dengue Fever Ontology	https://bioportal.bioontology.org/ontologies/IDODEN	An ontology for dengue fever.	^\d{7}$	0003463						False	IDODEN			IDODEN																	
-idomal	Malaria Ontology	https://www.vectorbase.org/ontology-browser	An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.	^\d{7}$	0002350	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/IDOMAL_$1		http://purl.obolibrary.org/obo/idomal.obo		True	IDOMAL		IDOMAL	IDOMAL								idomal	idomal	IDOMAL							
-idoo	Identifiers.org Ontology	http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology	Identifiers.org Ontology	^[0-9a-zA-Z]+$	DataCollection		http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1				False										idoo	idoo										
-idot	Identifiers.org Terms	http://biomodels.net/vocab/idot.rdf	Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.	^[A-Za-z]+$	identifierPattern		https://biomodels.net/vocab/idot.rdf#$1				False			idot							idot	idot										
-idpo	Intrinsically Disordered Proteins Ontology	https://www.disprot.org/ontology	IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.	^\d{5}$	00056	f.quaglia@ibiom.cnr.it	https://www.disprot.org/idpo/IDPO:$1				False																					
-idr	Image Data Resource	https://idr.openmicroscopy.org	"Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image"" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."	^[0-9]{4}$	0001		https://idr.openmicroscopy.org/search/?query=Name:idr$1				False										idr											
-iedb	Immune Epitope Database	https://www.lji.org/	The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.	^[0-9]+$	1038233		https://www.iedb.org/reference/$1				False										iedb											
-iev	Event (INOH pathway ontology)	http://www.inoh.org		^\d{7}$	0000000		http://purl.obolibrary.org/obo/IEV_$1				True			IEV									iev				iev					
-igrhcellid	Integrated Genomic Resources of human Cell Lines for Identification	http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi	Cell line databases/resources		ACHN		http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1				False					IGRhCellID																
-igsn	International Geo Sample Number	http://www.geosamples.org/	IGSN is a globally unique and persistent identifier for material samples and specimens.  IGSNs are obtained from IGSN e.V. Agents.	^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$	AU124		http://igsn.org/$1				False										igsn	igsn										
-igsr	International Genome Sample Resource	https://www.internationalgenome.org/	The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project.		NA06985		https://www.internationalgenome.org/data-portal/sample/$1				False					IGSR																
-ihw	International Histocompatibility Workshop cell lines	https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html	The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.	^IHW\d+$	IHW09326						False					IHW																
-illumina.probe	Illumina Probe Identifier	https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt	Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.	^ILMN_\d+$	ILMN_129894						False																					
-imanis	Imanis Life Sciences cell line products	https://www.imanislife.com/collections/cell-lines/	Cell line collections		CL070		https://www.imanislife.com/?s=$1				False					Imanis																
-imdrf	International Medical Device Regulators Forum	http://www.imdrf.org/	The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.								False																					
-imex	International Molecular Exchange	https://www.imexconsortium.org/	The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.	^IM-\d+(-?)(\d+?)$	IM-19210-3		https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1				False			IMEX							imex	imex					imex					
-img.gene	Integrated Microbial Genomes Gene	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.	^\d+$	638309541		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1				False			IMG.GENE							img.gene	img.gene					img.gene					
-img.taxon	Integrated Microbial Genomes Taxon	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.	^\d+$	648028003		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1				False			IMG.TAXON							img.taxon	img.taxon					img.taxon					
-imgt.hla	IMGT/HLA human major histocompatibility complex sequence database	https://www.ebi.ac.uk/imgt/hla/allele.html	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.	^[A-Z0-9*:]+$	A*01:01:01:01		https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1			IPD-IMGT/HLA	False			IMGT.HLA		IPD-IMGT/HLA				2773	imgt.hla	imgt.hla					imgthla					
-imgt.ligm	ImMunoGeneTics database covering immunoglobulins and T-cell receptors	http://www.imgt.org/	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.	^M\d+$	M94112		http://www.imgt.org/ligmdb/view?id=$1				False			IMGT.LIGM							imgt.ligm	imgt.ligm					imgt.ligm					
-imr	Molecule role (INOH Protein name/family name ontology)	http://www.inoh.org		^\d{7}$	0000001	curator@inoh.org	http://purl.obolibrary.org/obo/IMR_$1				True			IMR									imr				imr					
-inaturalist.taxon	iNaturalist Taxonomy	https://www.inaturalist.org/taxa	Identifier for a species in iNaturalist	^[1-9]\d{0,6}$	21723		https://www.inaturalist.org/taxa/$1				False																		P3151			
-inchi	InChI	http://www.chemspider.com/	The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.	^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$	InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3		http://www.chemspider.com/$1				False			INCHI							inchi	inchi							P234			
-inchikey	InChIKey	http://www.chemspider.com/	The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.	^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])$	RYYVLZVUVIJVGH-UHFFFAOYSA-N		http://www.chemspider.com/inchikey=$1				False			INCHIKEY							inchikey	inchikey							P235			
-inhand	The International Harmonization of Nomenclature and Diagnostic criteria	https://www.goreni.org/gr3_nomenclature.php	The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.								False																					
-inn	International Nonproprietary Names	https://www.who.int/teams/health-product-and-policy-standards/inn	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.		fluticasone		https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1			INN_ID	False																		P2275			
-ino	Interaction Network Ontology	https://github.com/INO-ontology/ino	he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.	^\d{7}$	0000003	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/INO_$1				False	INO			INO								ino	ino	INO							
-insdc	Nucleotide Sequence Database	https://www.ncbi.nlm.nih.gov/Genbank/	The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	X58356		https://www.ncbi.nlm.nih.gov/nuccore/$1				False			INSDC							insdc	insdc					insdc					
-insdc.cds	INSDC CDS	http://getentry.ddbj.nig.ac.jp	The coding sequence or protein identifiers as maintained in INSDC.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	AAA35559		http://getentry.ddbj.nig.ac.jp/getentry/dad/$1				False			INSDC.CDS							insdc.cds	insdc.cds										ncbiprotein
-insdc.gca	Genome assembly database	https://www.ebi.ac.uk/ena/browse/genome-assembly-database	The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.	^GC[AF]_[0-9]{9}\.[0-9]+$	GCA_000155495.1		https://www.ebi.ac.uk/ena/data/view/$1				False			INSDC.GCA							insdc.gca	insdc.gca										
-insdc.run	International Nucleotide Sequence Database Collaboration (INSDC) Run	https://www.insdc.org/	An experimental run, served thrugh the ENA	^(E|D|S)RR[0-9]{6,}$	ERR436051		https://www.ebi.ac.uk/ena/browser/view/$1				False																					ena.embl
-insdc.sra	Sequence Read Archive	https://www.ncbi.nlm.nih.gov/sra	The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.	^[SED]R[APRSXZ]\d+$	SRX000007		https://www.ncbi.nlm.nih.gov/sra/$1				False			INSDC.SRA							insdc.sra	insdc.sra										
-intact	IntAct protein interaction database	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data.	^EBI\-[0-9]+$	EBI-2307691		https://www.ebi.ac.uk/intact/interaction/$1				False			INTACT							intact	intact					intact	IntAct				
-intact.molecule	IntAct Molecule	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.	^EBI\-[0-9]+$	EBI-366083		https://www.ebi.ac.uk/intact/molecule/$1				False			INTACT.MOLECULE							intact.molecule	intact.molecule										
-interlex	InterLex	https://www.fdilab.org	InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. 	^[0-9]+$	0101963		https://scicrunch.org/scicrunch/interlex/view/ilx_$1			ILX	False										ilx											
-interpro	InterPro	http://www.ebi.ac.uk/interpro/index.html	InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.	^IPR\d{6}$	IPR016380	interhelp@ebi.ac.uk	https://www.ebi.ac.uk/interpro/entry/$1			IP|IPR|InterPro	False			IPR						1133	interpro	interpro	ipr				interpro	InterPro	P2926			
-ird.segment	IRD Segment Sequence	http://www.fludb.org/	Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope  and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).	^\w+(\_)?\d+(\.\d+)?$	CY077097		http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1				False			IRD.SEGMENT							ird.segment	ird.segment					ird.segment					
-irefweb	iRefWeb	http://wodaklab.org/iRefWeb/	iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.	^\d+$	617102		http://wodaklab.org/iRefWeb/interaction/show/$1				False			IREFWEB							irefweb	irefweb					irefweb					
-iro	Insect Resistance Ontology			^\d{7}$	0000008		https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1				True																					
-isbn	International Standard Book Number	http://isbndb.com/	The International Standard Book Number (ISBN) is for identifying printed books.	^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$	9781584885658		http://isbndb.com/search-all.html?kw=$1			ISBN-10|ISBN-13	False			ISBN-13						2634	isbn	isbn					isbn					
-isfinder	Insertion sequence elements database	http://www-is.biotoul.fr/i	ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.	^IS\w+(\-\d)?$	ISA1083-2		https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1				False			ISFINDER							isfinder	isfinder					isfinder					
+ICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."		01N50ZZ		https://www.findacode.com/code.php?set=ICD10PCS&c=$1				False	ICD10PCS			ICD10PCS															P1690			
+icd11	International Classification of Diseases, 11th Revision	https://icd.who.int/	Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.		RA01.0		https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1			ICD-11	False																			P7807			
+icd9	International Classification of Diseases, 9th Revision	https://www.cdc.gov/nchs/icd/icd9.htm	The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.		277.9		http://www.icd9data.com/getICD9Code.ashx?icd9=$1			ICD9|ICD9_2005|MTHICD9_2006	False																			P493			
+icd9cm	International Classification of Diseases, 9th Revision, Clinical Modification	https://www.cdc.gov/nchs/icd/icd9cm.htm	ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.	^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$	784		http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1			IC9CM|ICD9CM|ICD9CM_2005|ICD9CM_2006|ICDCM_2005	False	ICD9CM			ICD9CM															P1692			
+icdc	Integrated Canine Data Commons	https://caninecommons.cancer.gov/#/	The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.	^\d{6}$	000009		https://caninecommons.cancer.gov/#/study/$1				False										icdc												
+icdo	International Classification of Diseases for Oncology	https://www.who.int/classifications/icd/adaptations/oncology/en/	The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases	^[8-9]\d{3}(/[0-3])?$	9861/3		http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1			ICD-O|ICDO	False	ICDO															icdo			P563			
+iceberg.element	ICEberg element	http://db-mml.sjtu.edu.cn/ICEberg/	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.	^\d+$	100		http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1				False			ICEBERG.ELEMENT							iceberg.element	iceberg.element											
+iceberg.family	ICEberg family	http://db-mml.sjtu.edu.cn/ICEberg/	ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.	^\d+$	1		http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1				False			ICEBERG.FAMILY							iceberg.family	iceberg.family											
+iceo	Integrative and Conjugative Element Ontology	https://github.com/ontoice/ICEO	A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.	^\d{7}(_\d)?$	0000712_1	liumeng94@sjtu.edu.cn	http://purl.obolibrary.org/obo/ICEO_$1				False	ICEO			ICEO								iceo	iceo	ICEO								
+icepo	Ion Channel Electrophysiology Ontology	https://download.nextprot.org/pub/current_release/controlled_vocabularies/	The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. 	^\d{7}$	0000002				https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo		False																						
+iclc	Interlab Cell Line Collection	http://www.iclc.it	Cell line collections		ATL98012		http://www.iclc.it/details/det_list.php?line_id=$1				False					ICLC																	
+ico	Informed Consent Ontology	https://github.com/ICO-ontology/ICO	The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.	^\d{7}$	0000066	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/ICO_$1				False	ICO		ICO	ICO								ico	ico	ICO								
+ideal	Intrinsically Disordered proteins with Extensive Annotations and Literature	https://www.ideal-db.org	IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.	^IID\d+$	IID00001		http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1				False			IDEAL							ideal	ideal							IDEAL				
+ido	Infectious Disease Ontology	http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology	Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.	^[0-9]+$	0000504	Lindsay.Cowell@utsouthwestern.edu	https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1				False	IDO		IDO	IDO						ido	ido	ido	ido	IDO								
+idocovid19	The COVID-19 Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-covid-19	The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.	^\d{7}$	0001191	johnbeverley2021@u.northwestern.edu					False	IDO-COVID-19			IDO-COVID-19									idocovid19									
+idoden	Dengue Fever Ontology	https://bioportal.bioontology.org/ontologies/IDODEN	An ontology for dengue fever.	^\d{7}$	0003463						False	IDODEN			IDODEN																		
+idomal	Malaria Ontology	https://www.vectorbase.org/ontology-browser	An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.	^\d{7}$	0002350	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/IDOMAL_$1		http://purl.obolibrary.org/obo/idomal.obo		True	IDOMAL		IDOMAL	IDOMAL								idomal	idomal	IDOMAL								
+idoo	Identifiers.org Ontology	http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology	Identifiers.org Ontology	^[0-9a-zA-Z]+$	DataCollection		http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1				False										idoo	idoo											
+idot	Identifiers.org Terms	http://biomodels.net/vocab/idot.rdf	Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.	^[A-Za-z]+$	identifierPattern		https://biomodels.net/vocab/idot.rdf#$1				False			idot							idot	idot											
+idpo	Intrinsically Disordered Proteins Ontology	https://www.disprot.org/ontology	IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.	^\d{5}$	00056	f.quaglia@ibiom.cnr.it	https://www.disprot.org/idpo/IDPO:$1				False																						
+idr	Image Data Resource	https://idr.openmicroscopy.org	"Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image"" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."	^[0-9]{4}$	0001		https://idr.openmicroscopy.org/search/?query=Name:idr$1				False										idr												
+iedb	Immune Epitope Database	https://www.lji.org/	The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.	^[0-9]+$	1038233		https://www.iedb.org/reference/$1				False										iedb												
+iev	Event (INOH pathway ontology)	http://www.inoh.org		^\d{7}$	0000000		http://purl.obolibrary.org/obo/IEV_$1				True			IEV									iev				iev						
+igrhcellid	Integrated Genomic Resources of human Cell Lines for Identification	http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi	Cell line databases/resources		ACHN		http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1				False					IGRhCellID																	
+igsn	International Geo Sample Number	http://www.geosamples.org/	IGSN is a globally unique and persistent identifier for material samples and specimens.  IGSNs are obtained from IGSN e.V. Agents.	^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$	AU124		http://igsn.org/$1				False										igsn	igsn											
+igsr	International Genome Sample Resource	https://www.internationalgenome.org/	The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project.		NA06985		https://www.internationalgenome.org/data-portal/sample/$1				False					IGSR																	
+ihw	International Histocompatibility Workshop cell lines	https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html	The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.	^IHW\d+$	IHW09326						False					IHW																	
+illumina.probe	Illumina Probe Identifier	https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt	Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.	^ILMN_\d+$	ILMN_129894						False																						
+imanis	Imanis Life Sciences cell line products	https://www.imanislife.com/collections/cell-lines/	Cell line collections		CL070		https://www.imanislife.com/?s=$1				False					Imanis																	
+imdrf	International Medical Device Regulators Forum	http://www.imdrf.org/	The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.								False																						
+imex	International Molecular Exchange	https://www.imexconsortium.org/	The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.	^IM-\d+(-?)(\d+?)$	IM-19210-3		https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1				False			IMEX							imex	imex					imex	r3d100010669					
+img.gene	Integrated Microbial Genomes Gene	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.	^\d+$	638309541		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1				False			IMG.GENE							img.gene	img.gene					img.gene						
+img.taxon	Integrated Microbial Genomes Taxon	http://img.jgi.doe.gov/	The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.	^\d+$	648028003		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1				False			IMG.TAXON							img.taxon	img.taxon					img.taxon						
+imgt.hla	IMGT/HLA human major histocompatibility complex sequence database	https://www.ebi.ac.uk/imgt/hla/allele.html	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.	^[A-Z0-9*:]+$	A*01:01:01:01		https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1			IPD-IMGT/HLA	False			IMGT.HLA		IPD-IMGT/HLA				2773	imgt.hla	imgt.hla					imgthla						
+imgt.ligm	ImMunoGeneTics database covering immunoglobulins and T-cell receptors	http://www.imgt.org/	IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.	^M\d+$	M94112		http://www.imgt.org/ligmdb/view?id=$1				False			IMGT.LIGM							imgt.ligm	imgt.ligm					imgt.ligm						
+imr	Molecule role (INOH Protein name/family name ontology)	http://www.inoh.org		^\d{7}$	0000001	curator@inoh.org	http://purl.obolibrary.org/obo/IMR_$1				True			IMR									imr				imr						
+inaturalist.taxon	iNaturalist Taxonomy	https://www.inaturalist.org/taxa	Identifier for a species in iNaturalist	^[1-9]\d{0,6}$	21723		https://www.inaturalist.org/taxa/$1				False																			P3151			
+inchi	InChI	http://www.chemspider.com/	The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.	^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$	InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3		http://www.chemspider.com/$1				False			INCHI							inchi	inchi								P234			
+inchikey	InChIKey	http://www.chemspider.com/	The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.	^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])$	RYYVLZVUVIJVGH-UHFFFAOYSA-N		http://www.chemspider.com/inchikey=$1				False			INCHIKEY							inchikey	inchikey								P235			
+inhand	The International Harmonization of Nomenclature and Diagnostic criteria	https://www.goreni.org/gr3_nomenclature.php	The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.								False																						
+inn	International Nonproprietary Names	https://www.who.int/teams/health-product-and-policy-standards/inn	Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.		fluticasone		https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1			INN_ID	False																			P2275			
+ino	Interaction Network Ontology	https://github.com/INO-ontology/ino	he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.	^\d{7}$	0000003	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/INO_$1				False	INO			INO								ino	ino	INO								
+insdc	Nucleotide Sequence Database	https://www.ncbi.nlm.nih.gov/Genbank/	The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	X58356		https://www.ncbi.nlm.nih.gov/nuccore/$1				False			INSDC							insdc	insdc					insdc						
+insdc.cds	INSDC CDS	http://getentry.ddbj.nig.ac.jp	The coding sequence or protein identifiers as maintained in INSDC.	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	AAA35559		http://getentry.ddbj.nig.ac.jp/getentry/dad/$1				False			INSDC.CDS							insdc.cds	insdc.cds											ncbiprotein
+insdc.gca	Genome assembly database	https://www.ebi.ac.uk/ena/browse/genome-assembly-database	The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.	^GC[AF]_[0-9]{9}\.[0-9]+$	GCA_000155495.1		https://www.ebi.ac.uk/ena/data/view/$1				False			INSDC.GCA							insdc.gca	insdc.gca											
+insdc.run	International Nucleotide Sequence Database Collaboration (INSDC) Run	https://www.insdc.org/	An experimental run, served thrugh the ENA	^(E|D|S)RR[0-9]{6,}$	ERR436051		https://www.ebi.ac.uk/ena/browser/view/$1				False																						ena.embl
+insdc.sra	Sequence Read Archive	https://www.ncbi.nlm.nih.gov/sra	The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.	^[SED]R[APRSXZ]\d+$	SRX000007		https://www.ncbi.nlm.nih.gov/sra/$1				False			INSDC.SRA							insdc.sra	insdc.sra											
+intact	IntAct protein interaction database	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data.	^EBI\-[0-9]+$	EBI-2307691		https://www.ebi.ac.uk/intact/interaction/$1				False			INTACT							intact	intact					intact	r3d100010671	IntAct				
+intact.molecule	IntAct Molecule	https://www.ebi.ac.uk/intact/	IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.	^EBI\-[0-9]+$	EBI-366083		https://www.ebi.ac.uk/intact/molecule/$1				False			INTACT.MOLECULE							intact.molecule	intact.molecule											
+interlex	InterLex	https://www.fdilab.org	InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. 	^[0-9]+$	0101963		https://scicrunch.org/scicrunch/interlex/view/ilx_$1			ILX	False										ilx												
+interpro	InterPro	http://www.ebi.ac.uk/interpro/index.html	InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.	^IPR\d{6}$	IPR016380	interhelp@ebi.ac.uk	https://www.ebi.ac.uk/interpro/entry/$1			IP|IPR|InterPro	False			IPR						1133	interpro	interpro	ipr				interpro	r3d100010798	InterPro	P2926			
+ird.segment	IRD Segment Sequence	http://www.fludb.org/	Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope  and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).	^\w+(\_)?\d+(\.\d+)?$	CY077097		http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1				False			IRD.SEGMENT							ird.segment	ird.segment					ird.segment						
+irefweb	iRefWeb	http://wodaklab.org/iRefWeb/	iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.	^\d+$	617102		http://wodaklab.org/iRefWeb/interaction/show/$1				False			IREFWEB							irefweb	irefweb					irefweb	r3d100012725					
+iro	Insect Resistance Ontology			^\d{7}$	0000008		https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1				True																						
+isbn	International Standard Book Number	http://isbndb.com/	The International Standard Book Number (ISBN) is for identifying printed books.	^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$	9781584885658		http://isbndb.com/search-all.html?kw=$1			ISBN-10|ISBN-13	False			ISBN-13						2634	isbn	isbn					isbn						
+isfinder	Insertion sequence elements database	http://www-is.biotoul.fr/i	ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.	^IS\w+(\-\d)?$	ISA1083-2		https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1				False			ISFINDER							isfinder	isfinder					isfinder						
 isni	International Standard Name Identifier	http://www.isni.org	"ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.
 
-The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."	^[0-9]{15}[0-9X]{1}$	000000012281955X		http://www.isni.org/isni/$1				False										isni	isni										
-issn	International Standard Serial Number	https://portal.issn.org	The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.	^\d{4}-\d{3}[\dX]$	0745-4570		https://portal.issn.org/resource/ISSN/$1				False			ISSN							issn	issn										
-itis	Integrated Taxonomic Information System	https://www.itis.gov/	Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.	^\d+$	589462		https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1				False																		P815			
-ito	Intelligence Task Ontology	https://bioportal.bioontology.org/	The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.	^.+$	ITO_01625		https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https%3A%2F%2Fai-strategies.org%2Fontology%2F$1				False	ITO			ITO						ito											
-iuphar.family	IUPHAR family	http://www.guidetopharmacology.org/	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.	^\d+$	78		http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1			IUPHARfam	False			IUPHAR.FAMILY							iuphar.family	iuphar.family					iuphar.family					
-iuphar.ligand	Guide to Pharmacology Ligand	http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.	^\d+$	1755		http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1			IUPHAR_LIGAND|IUPHAR_LIGAND_ID	False			IUPHAR.LIGAND							iuphar.ligand	iuphar.ligand							P595			
-iuphar.receptor	Guide to Pharmacology Target	http://www.guidetopharmacology.org/targets.jsp	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.	^\d+$	101		http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1			IUPHAR_GPCR|IUPHARobj	False			IUPHAR.RECEPTOR							iuphar.receptor	iuphar.receptor							P5458			
-jax	Jackson Laboratories Strain	https://www.jax.org/strain	Information about the C57BL/6J. Includes genetic background and disease data.	^\d{6}$	004435		https://www.jax.org/strain/$1				False			JAX																		
-jaxmice	JAX Mice	http://jaxmice.jax.org/	JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.	^\d+$	005012		http://jaxmice.jax.org/strain/$1.html				False			JAXMICE							jaxmice	jaxmice										
-jcggdb	Japan Consortium for Glycobiology and Glycotechnology Database	http://jcggdb.jp/index_en.html	JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.	^JCGG-STR\d{6}$	JCGG-STR008690		http://jcggdb.jp/idb/jcggdb/$1				False			JCGGDB							jcggdb	jcggdb										
-jcm	Japan Collection of Microorganisms	http://www.jcm.riken.go.jp/	The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.	^\d+$	17254		http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1				False			JCM							jcm	jcm					jcm					
-jcrb	JRBC Cell Bank	https://cellbank.nibiohn.go.jp	Cell line collections		JCRB1355		https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1				False					JCRB																
-jcsd	Japan Chemical Substance Dictionary	http://jglobal.jst.go.jp/en/	The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).	^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$	J55.713G		http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1				False			JCSD							jcsd	jcsd					jcsd					
-jstor	Digital archive of scholarly articles	http://www.jstor.org/	JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.	^\d+$	3075966		http://www.jstor.org/stable/$1				False			JSTOR							jstor	jstor										
-jws	JWS Online	http://jjj.biochem.sun.ac.za/models/	JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.	^\w+$	achcar11		https://jjj.bio.vu.nl/models/$1				False			JWS							jws	jws					jws					
-kaggle	Kaggle	https://kaggle.com	Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.	^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$	nasa/kepler-exoplanet-search-results		https://www.kaggle.com/$1				False										kaggle	kaggle										
-kclb	Korean Cell Line Bank	https://cellbank.snu.ac.kr/english	Cell line collections		10020.2		https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1				False					KCLB																
-kegg	Kyoto Encyclopedia of Genes and Genomes	http://www.kegg.jp/	Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.	^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$	hsa00190		http://www.kegg.jp/entry/$1			KEGG	True			KEGG			000409				kegg	kegg						KEGG				
-kegg.compound	KEGG Compound	https://www.genome.jp/kegg/ligand.html	KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.	^C\d+$	C12345		https://www.kegg.jp/entry/$1			KEGG COMPOUND|KEGG.COMPOUND	False			KEGG.COMPOUND						2605	kegg.compound	kegg.compound					kegg.compound		P665	kegg		
+The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."	^[0-9]{15}[0-9X]{1}$	000000012281955X		http://www.isni.org/isni/$1				False										isni	isni											
+issn	International Standard Serial Number	https://portal.issn.org	The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.	^\d{4}-\d{3}[\dX]$	0745-4570		https://portal.issn.org/resource/ISSN/$1				False			ISSN							issn	issn											
+itis	Integrated Taxonomic Information System	https://www.itis.gov/	Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.	^\d+$	589462		https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1				False																	r3d100011213		P815			
+ito	Intelligence Task Ontology	https://bioportal.bioontology.org/	The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.	^.+$	ITO_01625		https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https%3A%2F%2Fai-strategies.org%2Fontology%2F$1				False	ITO			ITO						ito												
+iuphar.family	IUPHAR family	http://www.guidetopharmacology.org/	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.	^\d+$	78		http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1			IUPHARfam	False			IUPHAR.FAMILY							iuphar.family	iuphar.family					iuphar.family						
+iuphar.ligand	Guide to Pharmacology Ligand	http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.	^\d+$	1755		http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1			IUPHAR_LIGAND|IUPHAR_LIGAND_ID	False			IUPHAR.LIGAND							iuphar.ligand	iuphar.ligand								P595			
+iuphar.receptor	Guide to Pharmacology Target	http://www.guidetopharmacology.org/targets.jsp	The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.	^\d+$	101		http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1			IUPHAR_GPCR|IUPHARobj	False			IUPHAR.RECEPTOR							iuphar.receptor	iuphar.receptor								P5458			
+jax	Jackson Laboratories Strain	https://www.jax.org/strain	Information about the C57BL/6J. Includes genetic background and disease data.	^\d{6}$	004435		https://www.jax.org/strain/$1				False			JAX																			
+jaxmice	JAX Mice	http://jaxmice.jax.org/	JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.	^\d+$	005012		http://jaxmice.jax.org/strain/$1.html				False			JAXMICE							jaxmice	jaxmice											
+jcggdb	Japan Consortium for Glycobiology and Glycotechnology Database	http://jcggdb.jp/index_en.html	JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.	^JCGG-STR\d{6}$	JCGG-STR008690		http://jcggdb.jp/idb/jcggdb/$1				False			JCGGDB							jcggdb	jcggdb											
+jcm	Japan Collection of Microorganisms	http://www.jcm.riken.go.jp/	The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.	^\d+$	17254		http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1				False			JCM							jcm	jcm					jcm						
+jcrb	JRBC Cell Bank	https://cellbank.nibiohn.go.jp	Cell line collections		JCRB1355		https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1				False					JCRB																	
+jcsd	Japan Chemical Substance Dictionary	http://jglobal.jst.go.jp/en/	The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).	^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$	J55.713G		http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1				False			JCSD							jcsd	jcsd					jcsd						
+jstor	Digital archive of scholarly articles	http://www.jstor.org/	JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.	^\d+$	3075966		http://www.jstor.org/stable/$1				False			JSTOR							jstor	jstor											
+jws	JWS Online	http://jjj.biochem.sun.ac.za/models/	JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.	^\w+$	achcar11		https://jjj.bio.vu.nl/models/$1				False			JWS							jws	jws					jws						
+kaggle	Kaggle	https://kaggle.com	Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.	^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$	nasa/kepler-exoplanet-search-results		https://www.kaggle.com/$1				False										kaggle	kaggle						r3d100012705					
+kclb	Korean Cell Line Bank	https://cellbank.snu.ac.kr/english	Cell line collections		10020.2		https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1				False					KCLB																	
+kegg	Kyoto Encyclopedia of Genes and Genomes	http://www.kegg.jp/	Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.	^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$	hsa00190		http://www.kegg.jp/entry/$1			KEGG	True			KEGG			000409				kegg	kegg							KEGG				
+kegg.compound	KEGG Compound	https://www.genome.jp/kegg/ligand.html	KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.	^C\d+$	C12345		https://www.kegg.jp/entry/$1			KEGG COMPOUND|KEGG.COMPOUND	False			KEGG.COMPOUND						2605	kegg.compound	kegg.compound					kegg.compound			P665	kegg		
 kegg.dgroup	KEGG Drug Group	http://www.genome.jp/kegg/reaction/	" KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.
 
     Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.
@@ -749,270 +749,270 @@ kegg.dgroup	KEGG Drug Group	http://www.genome.jp/kegg/reaction/	" KEGG DGROUP co
     Class - drug classes often representing similar mechanisms of action
     Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters
 
-Chemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."	^DG\d+$	DG00301					KEGG_DGROUP|KEGG_DRUG_GROUP	False																			kegg		
-kegg.disease	KEGG Disease	http://www.genome.jp/kegg/disease/	The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.	^H\d+$	H00076		http://www.kegg.jp/entry/$1				False			KEGG.DISEASE							kegg.disease	kegg.disease					kegg.disease			kegg		
-kegg.drug	KEGG Drug	https://www.genome.jp/kegg/drug/	KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.	^D\d+$	D00123		https://www.kegg.jp/entry/$1			KEGG DRUG|KEGG.DRUG	False			KEGG.DRUG						2609	kegg.drug	kegg.drug					kegg.drug		P665	kegg		
-kegg.environ	KEGG Environ	http://www.genome.jp/kegg/drug/environ.html	KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.	^(ev\:)?E\d+$	ev:E00032		http://www.kegg.jp/entry/$1			KEGG.EDRUG	True			KEGG.ENVIRON							kegg.environ	kegg.environ								kegg		
-kegg.enzyme	KEGG Enzyme	http://www.genome.jp/dbget-bin/www_bfind?enzyme	KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.				http://www.genome.jp/dbget-bin/www_bget?ec:$1				False																			kegg	eccode	
-kegg.genes	KEGG Genes	http://www.genome.jp/kegg/genes.html	KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.	^\w+:[\w\d\.-]*$	bsu:BSU01340		http://www.kegg.jp/entry/$1				False			KEGG.GENES							kegg.genes	kegg.genes							P665	kegg		
-kegg.genome	KEGG Genome	http://www.genome.jp/kegg/catalog/org_list.html	KEGG Genome is a collection of organisms whose genomes have been completely sequenced.	^(T0\d+|\w{3,5})$	T06648		http://www.kegg.jp/entry/$1			kegg_genome|kegg_genomes	False			KEGG.GENOME							kegg.genome	kegg.genome					kegg.genome		P665	kegg		
-kegg.glycan	KEGG Glycan	https://www.genome.jp/kegg/glycan/	KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.	^G\d+$	G00123		https://www.kegg.jp/entry/$1				False			KEGG.GLYCAN						2613	kegg.glycan	kegg.glycan					kegg.glycan			kegg		
-kegg.ligand	KEGG LIGAND	http://www.genome.ad.jp/kegg/docs/upd_ligand.html					http://www.genome.jp/dbget-bin/www_bget?cpd:$1				True																			kegg		
-kegg.metagenome	KEGG Metagenome	http://www.genome.jp/kegg/catalog/org_list3.html	The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.	^T3\d+$	T30002		http://www.kegg.jp/entry/$1				False			KEGG.METAGENOME							kegg.metagenome	kegg.metagenome					kegg.metagenome			kegg		
-kegg.module	KEGG Module	http://www.kegg.jp/kegg/module.html	KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.	^([a-z]{3,5}_)?M\d{5}$	M00002		http://www.kegg.jp/entry/$1				False			KEGG.MODULE							kegg.module	kegg.module								kegg		
-kegg.orthology	KEGG Orthology	http://www.genome.jp/kegg/ko.html	KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.	^K\d+$	K00001		http://www.kegg.jp/entry/$1				False			KEGG.ORTHOLOGY							kegg.orthology	kegg.orthology					kegg.orthology			kegg		
-kegg.pathway	KEGG Pathways Database	https://www.genome.jp/kegg/pathway.html	KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.	^\w{2,4}\d{5}$	rsk00410		https://www.kegg.jp/entry/$1			KEGG-path|KEGG_PATHWAY	False			KEGG.PATHWAY						2343	kegg.pathway	kegg.pathway					kegg.pathway		P665	kegg		
-kegg.rclass	KEGG Reaction Class	http://www.genome.jp/kegg/reaction/	KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.	^RC\d+$	RC00001					KEGG_RCLASS|KEGG_REACTION_CLASS	False																			kegg		
-kegg.reaction	KEGG Reaction	https://www.genome.jp/kegg/reaction/	KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.	^R\d+$	R00100		https://www.kegg.jp/entry/$1			KEGG_REACTION	False			KEGG.REACTION						2608	kegg.reaction	kegg.reaction					kegg.reaction		P665	kegg		
-kerafast	Kerafast cell lines	https://www.kerafast.com/	Cell line collections		EJH014		https://www.kerafast.com/Search?SearchTerm=&quot;$1&quot;				False					Kerafast																
+Chemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."	^DG\d+$	DG00301					KEGG_DGROUP|KEGG_DRUG_GROUP	False																				kegg		
+kegg.disease	KEGG Disease	http://www.genome.jp/kegg/disease/	The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.	^H\d+$	H00076		http://www.kegg.jp/entry/$1				False			KEGG.DISEASE							kegg.disease	kegg.disease					kegg.disease				kegg		
+kegg.drug	KEGG Drug	https://www.genome.jp/kegg/drug/	KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.	^D\d+$	D00123		https://www.kegg.jp/entry/$1			KEGG DRUG|KEGG.DRUG	False			KEGG.DRUG						2609	kegg.drug	kegg.drug					kegg.drug			P665	kegg		
+kegg.environ	KEGG Environ	http://www.genome.jp/kegg/drug/environ.html	KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.	^(ev\:)?E\d+$	ev:E00032		http://www.kegg.jp/entry/$1			KEGG.EDRUG	True			KEGG.ENVIRON							kegg.environ	kegg.environ									kegg		
+kegg.enzyme	KEGG Enzyme	http://www.genome.jp/dbget-bin/www_bfind?enzyme	KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.				http://www.genome.jp/dbget-bin/www_bget?ec:$1				False																				kegg	eccode	
+kegg.genes	KEGG Genes	http://www.genome.jp/kegg/genes.html	KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.	^\w+:[\w\d\.-]*$	bsu:BSU01340		http://www.kegg.jp/entry/$1				False			KEGG.GENES							kegg.genes	kegg.genes								P665	kegg		
+kegg.genome	KEGG Genome	http://www.genome.jp/kegg/catalog/org_list.html	KEGG Genome is a collection of organisms whose genomes have been completely sequenced.	^(T0\d+|\w{3,5})$	T06648		http://www.kegg.jp/entry/$1			kegg_genome|kegg_genomes	False			KEGG.GENOME							kegg.genome	kegg.genome					kegg.genome			P665	kegg		
+kegg.glycan	KEGG Glycan	https://www.genome.jp/kegg/glycan/	KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.	^G\d+$	G00123		https://www.kegg.jp/entry/$1				False			KEGG.GLYCAN						2613	kegg.glycan	kegg.glycan					kegg.glycan				kegg		
+kegg.ligand	KEGG LIGAND	http://www.genome.ad.jp/kegg/docs/upd_ligand.html					http://www.genome.jp/dbget-bin/www_bget?cpd:$1				True																				kegg		
+kegg.metagenome	KEGG Metagenome	http://www.genome.jp/kegg/catalog/org_list3.html	The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.	^T3\d+$	T30002		http://www.kegg.jp/entry/$1				False			KEGG.METAGENOME							kegg.metagenome	kegg.metagenome					kegg.metagenome				kegg		
+kegg.module	KEGG Module	http://www.kegg.jp/kegg/module.html	KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.	^([a-z]{3,5}_)?M\d{5}$	M00002		http://www.kegg.jp/entry/$1				False			KEGG.MODULE							kegg.module	kegg.module									kegg		
+kegg.orthology	KEGG Orthology	http://www.genome.jp/kegg/ko.html	KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.	^K\d+$	K00001		http://www.kegg.jp/entry/$1				False			KEGG.ORTHOLOGY							kegg.orthology	kegg.orthology					kegg.orthology				kegg		
+kegg.pathway	KEGG Pathways Database	https://www.genome.jp/kegg/pathway.html	KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.	^\w{2,4}\d{5}$	rsk00410		https://www.kegg.jp/entry/$1			KEGG-path|KEGG_PATHWAY	False			KEGG.PATHWAY						2343	kegg.pathway	kegg.pathway					kegg.pathway			P665	kegg		
+kegg.rclass	KEGG Reaction Class	http://www.genome.jp/kegg/reaction/	KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.	^RC\d+$	RC00001					KEGG_RCLASS|KEGG_REACTION_CLASS	False																				kegg		
+kegg.reaction	KEGG Reaction	https://www.genome.jp/kegg/reaction/	KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.	^R\d+$	R00100		https://www.kegg.jp/entry/$1			KEGG_REACTION	False			KEGG.REACTION						2608	kegg.reaction	kegg.reaction					kegg.reaction			P665	kegg		
+kerafast	Kerafast cell lines	https://www.kerafast.com/	Cell line collections		EJH014		https://www.kerafast.com/Search?SearchTerm=&quot;$1&quot;				False					Kerafast																	
 knapsack	KNApSAcK	http://www.knapsackfamily.com/KNApSAcK/	"KNApSAcK provides information on metabolites and the
-taxonomic class with which they are associated."	^C\d{8}$	C00000001		http://www.knapsackfamily.com/knapsack_core/information.php?word=$1				False			KNAPSACK							knapsack	knapsack							P2064			
-kupo	Kidney and Urinary Pathway Ontology	http://www.kupkb.org/		^\d{7}$	0001009						True																					
-kyinno	KYinno cell lines	https://www.kyinno.com/	Cell line collections		KC-0979		https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf				False					KYinno																
-labo	clinical LABoratory Ontology	https://github.com/OpenLHS/LABO	LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.	^\d{7}$	0000124	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/LABO_$1				False	LABO			LABO								labo	labo	LABO							
-lbo	Livestock Breed Ontology	http://bioportal.bioontology.org/ontologies/LBO	A vocabulary for cattle, chicken, horse, pig, and sheep breeds.	^\d{7}$	0000487	caripark@iastate.edu		https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl	https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.obo		False	LBO	LBO		LBO									lbo								
-lei	Global LEI Index	https://www.gleif.org/	Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.	^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$	HWUPKR0MPOU8FGXBT394		https://www.gleif.org/lei/$1				False										lei	lei										
-lepao	Lepidoptera Anatomy Ontology	https://github.com/insect-morphology/lepao	The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.	^\d{7}$	0000005	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/LEPAO_$1				False	LEPAO			LEPAO								lepao	lepao								
-lgai.cede	LG Chemical Entity Detection Dataset (LGCEDe)	https://www.lgresearch.ai	LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).	^LGCEDe-S-\d{9}$	LGCEDe-S-000002244		https://s3.us-east-2.amazonaws.com/lg.cede/$1				False										lgai.cede											
-lgic	Ligand-Gated Ion Channel database	https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php	The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.	^\w+$	5HT3Arano		https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php				True			LGIC							lgic	lgic										
-licebase	LiceBase	https://licebase.org	Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon,  significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.	^[A-Za-z0-9\-\/]+$	EMLSAT00000003403		https://licebase.org/?q=$1				False			LICEBASE							licebase	licebase										
-ligandbook	LigandBook	https://ligandbook.org/	Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.	^[0-9]+$	785		https://ligandbook.org/package/$1				False										ligandbook	ligandbook										
-ligandbox	LigandBox	http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en	LigandBox is a database of 3D compound structures.  Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.	^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$	D00001		http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1				False			LIGANDBOX							ligandbox	ligandbox										
-ligandexpo	Ligand Expo	http://ligand-depot.rutgers.edu/index.html	Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.	^(\w){3}$	ABC		http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid				False			LIGANDEXPO							ligandexpo	ligandexpo					ligandexpo					
-ligea	Cancer cell LInes GEne fusions portAl	http://hpc-bioinformatics.cineca.it/fusion/main	Polymorphism and mutation databases		CCLE_867		http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1				False					LiGeA																
-limore	Liver Cancer Model Repository	https://www.picb.ac.cn/limore/home	Cell line databases/resources		Li7		https://www.picb.ac.cn/limore/cellLines/single?para=$1				False					LIMORE																
-lincs.cell	LINCS Cell	http://lincsportal.ccs.miami.edu/cells/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to  create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.	^(LCL|LDC|ES|LSC|LPC)-\d+$	LCL-2085		http://lincsportal.ccs.miami.edu/cells/#/view/$1			LINCS_LDP	False			LINCS.CELL		LINCS_LDP					lincs.cell	lincs.cell										
-lincs.data	LINCS Data	http://lincsportal.ccs.miami.edu/datasets/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).	^[EL]D[SG]-\d+$	LDS-1110		http://lincsportal.ccs.miami.edu/datasets/#/view/$1				False			LINCS.DATA							lincs.data	lincs.data										
-lincs.protein	LINCS Protein	http://lincs.hms.harvard.edu/db/proteins/	The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.	^\d+$	200282		https://lincs.hms.harvard.edu/db/proteins/$1				False			LINCS.PROTEIN							lincs.protein	lincs.protein										
-lincs.smallmolecule	LINCS Small Molecule	http://lincsportal.ccs.miami.edu/SmallMolecules/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).	^LSM-\d+$	LSM-6306		http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1			lincs	False			LINCS.SMALLMOLECULE							lincs.smallmolecule	lincs.smallmolecule										
-linguist	Linguist	https://github.com/github/linguist	Registry of programming languages for the Linguist program for detecting and highlighting programming languages.	^[a-zA-Z0-9 +#'*]+$	Python		https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1				False										linguist											
-lipidbank	LipidBank	http://lipidbank.jp/index.html	LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.	^\w+\d+$	BBA0001		http://lipidbank.jp/cgi-bin/detail.cgi?id=$1				False			LIPIDBANK						2665	lipidbank	lipidbank					lipidbank					
-lipidmaps	LIPID MAPS	http://www.lipidmaps.org	The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.	^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$	LMPR0102010012		http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1			LIPID MAPS|LIPID_MAPS_class|LIPID_MAPS_instance	False			LIPIDMAPS			000564			2625	lipidmaps	lipidmaps					lipidmaps		P2063			
-lipro	Lipid Ontology		An ontology representation of the LIPIDMAPS nomenclature classification.			bakerc@unb.ca	http://purl.obolibrary.org/obo/LIPRO_$1				True	LIPRO		LIPRO	LIPRO								lipro									
-lncipedia	LNCipedia	https://lncipedia.org	A comprehensive compendium of human long non-coding RNAs		SNHG3						False																					
-loggerhead	Loggerhead nesting	http://www.mesquiteproject.org/ontology/Loggerhead/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/LOGGERHEAD_$1				True			LOGGERHEAD									loggerhead									
-loinc	Logical Observation Identifiers Names and Codes	https://loinc.org/	The international standard for identifying health measurements, observations, and documents.		LL379-9		https://loinc.org/$1			LNC	False	LOINC			LOINC																	
-lonza	Lonza	https://knowledge.lonza.com	Contains information about cells and data sheets related to transfection.	^\d+$	968		https://knowledge.lonza.com/cell?id=$1				False					Lonza																
-lotus	LOTUS Initiative for Open Natural Products Research	https://lotus.naturalproducts.net	LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.	^LTS\d{7}$	LTS0004651	adriano.rutz@ik.me	https://lotus.naturalproducts.net/compound/lotus_id/$1				False																					
-lpt	Livestock Product Trait Ontology	https://github.com/AnimalGenome/livestock-product-trait-ontology	The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.	^\d+$	0000001	caripark@iastate.edu	http://purl.obolibrary.org/obo/LPT_$1	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.obo		False	LPT	LPT	LPT	LPT																	
-lrg	Locus Reference Genomic	http://www.lrg-sequence.org/	A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.	^LRG_\d+$	LRG_1		ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml				False			LRG							lrg	lrg										
-lspci	Laboratory of Systems Pharmacology Compound	https://labsyspharm.github.io/lspci/	Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)	^\d+$	1		https://labsyspharm.github.io/lspci/$1				False																					
-lter	Long Term Ecological Research Controlled Vocabulary	https://vocab.lternet.edu/vocab/vocab/index.php	Ecological terms	^\d+$	182		https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1				False																					
-ma	Mouse adult gross anatomy	https://github.com/obophenotype/mouse-anatomy-ontology	A structured controlled vocabulary of the adult anatomy of the mouse (Mus)	^\d+$	0002502	Terry.Hayamizu@jax.org	http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1				False	MA		MA	MA						ma	ma	ma	ma	MA		ma					
-macie	Mechanism, Annotation and Classification in Enzymes	https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html	MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.	^M\d{4}$	M0001		https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1				False			MACIE						2641	macie	macie					macie					
-maizegdb.locus	MaizeGDB Locus	http://www.maizegdb.org/	MaizeGDB is the maize research community's central repository for genetics and genomics information.	^\d+$	25011		http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1			MaizeGDB	False			MAIZEGDB.LOCUS							maizegdb.locus	maizegdb.locus					maizegdb	MaizeGDB				
-mamo	Mathematical modeling ontology	http://sourceforge.net/p/mamo-ontology/wiki/Home/	The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.	^\d{7}$	0000026		http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1				True	MAMO		MAMO	MAMO						mamo	mamo	mamo	mamo	MAMO							
-mao	Multiple alignment	http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html				julie@igbmc.u-strasbg.fr	http://purl.obolibrary.org/obo/MAO_$1				True			MAO									mao				mao					
-massbank	MassBank	http://www.massbank.jp	MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).	^[A-Z]{2}[A-Z0-9][0-9]{5}$	PB000166		http://www.massbank.jp/RecordDisplay?id=$1				False			MASSBANK							massbank	massbank							P6689			
-massive	MassIVE	https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp	MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.	^MSV\d+$	MSV000082131		https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1				False			MASSIVE							massive	massive						MassIVE				
-mat	Minimal Anatomical Terminology			^\d{7}$	0000000	j.bard@ed.ac.uk	http://purl.obolibrary.org/obo/MAT_$1				True	MAT		MAT	MAT								mat									
-matrixdb	MatrixDB	http://matrixdb.univ-lyon1.fr/	MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides		MULT_4_VAR1_bovine		http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1				False																matrixdb					
-matrixdb.association	MatrixDB Association	http://matrixdb.univ-lyon1.fr/	MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$	P00747__P07355		http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association				False			MATRIXDB.ASSOCIATION							matrixdb.association	matrixdb.association										
-maxo	Medical Action Ontology	https://github.com/monarch-initiative/MAxO	An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.	^\d{7}$	0000008	Leigh.Carmody@jax.org	http://purl.obolibrary.org/obo/MAXO_$1				False	MAXO			MAXO								maxo	maxo	MAXO							
-mba	Mouse Brain Atlas	https://mouse.brain-map.org	A controlled vocabulary to support the study of transcription in the mouse brain	^\d+$	688				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo		False																					
-mcc	Cell Line Ontology [derivative]										True				MCCL																	
-mco	Microbial Conditions Ontology	https://github.com/microbial-conditions-ontology/microbial-conditions-ontology	Microbial Conditions Ontology is an ontology...	^\d+$	0000858	citlalli.mejiaalmonte@gmail.com	http://purl.obolibrary.org/obo/MCO_$1				False	MCO			MCO								mco	mco	MCO							
-mdm	Medical Data Models	https://medical-data-models.org/	The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.	^\d+$	4776		https://medical-data-models.org/forms/$1				False	MDM		MDM	MDM						mdm	mdm										
-meddra	Medical Dictionary for Regulatory Activities Terminology	http://bioportal.bioontology.org/ontologies/MEDDRA	The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).	^\d+$	10015919		http://purl.bioontology.org/ontology/MEDDRA/$1			MEDRA|MeDRA|MedDRA|Medical Dictionary for Regulatory Activities	False	MEDDRA		MEDDRA	MEDDRA						meddra	meddra							P3201			
-medgen	Human Medical Genetics	https://www.ncbi.nlm.nih.gov/medgen/	MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.	^[CN]*\d{4,7}$	760050		https://www.ncbi.nlm.nih.gov/medgen/$1				False			MedGen							medgen	medgen										
-medlineplus	MedlinePlus Health Topics	http://www.nlm.nih.gov/medlineplus/	MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.	^\d+$	002804		http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm				False	MEDLINEPLUS		MEDLINEPLUS	MEDLINEPLUS						medlineplus	medlineplus										
-merops.clan	MEROPS Clan	https://www.ebi.ac.uk/merops	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.		IA		https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1				False																			merops		
-merops.entry	MEROPS Entry	http://merops.sanger.ac.uk/index.htm	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.	^[SCTAGMNUI]\d{2}\.([AB]\d{2}|\d{3})$	I31.952		https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1			merops.inhibitor	False			MEROPS.INHIBITOR						2629	merops.inhibitor	merops.inhibitor					merops	MEROPS				
-merops.family	MEROPS Family	http://merops.sanger.ac.uk/index.htm	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.	^[SCTAGMNU]\d+$	S1		https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1				False			MEROPS.FAMILY							merops.family	merops.family								merops		
-mesh	Medical Subject Headings	http://id.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.	^(C|D)\d{6,9}$	C063233		https://meshb.nlm.nih.gov/record/ui?ui=$1			MESH|MESHA|MESHC|MESHCS|MESHD|MESHPP|MESH_DESCRIPTOR_UI|MESH_SUPPLEMENTAL_RECORD_UI|MSH	False	MESH		MESH	MESH	MeSH				1177	mesh	mesh					mesh		P486			
-mesh.2012	MeSH 2012	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.	^[A-Za-z0-9]+$	17186		http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded				False			MESH.2012							mesh.2012	mesh.2012										
-mesh.2013	MeSH 2013	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.	^[A-Za-z0-9]+$	17165		http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded				False			MESH.2013							mesh.2013	mesh.2013										
-metabolights	MetaboLights Compound	https://www.ebi.ac.uk/metabolights/	MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.	^MTBLS\d+$	MTBLS1		https://www.ebi.ac.uk/metabolights/$1				False			METABOLIGHTS		MetaboLights					metabolights	metabolights							P3890			
-metacyc.compound	Metabolic Encyclopedia of metabolic and other pathways	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	CPD-10330		https://metacyc.org/compound?orgid=META&id=$1			MetaCyc	False			METACYC.COMPOUND							metacyc.compound	metacyc.compound										
-metacyc.reaction	MetaCyc Reaction	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	RXN-14904		https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1				False			METACYC.REACTION							metacyc.reaction	metacyc.reaction										
-metanetx.chemical	MetaNetX chemical	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.	^(MNXM\d+|BIOMASS|WATER)$	MNXM1723		https://www.metanetx.org/chem_info/$1				False			METANETX.CHEMICAL							metanetx.chemical	metanetx.chemical										
-metanetx.compartment	MetaNetX compartment	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.	^(MNX[CD]\d+|BOUNDARY|IN|OUT)$	MNXC15		https://www.metanetx.org/comp_info/$1				False			METANETX.COMPARTMENT							metanetx.compartment	metanetx.compartment										
-metanetx.reaction	MetaNetX reaction	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.	^(MNXR\d+|EMPTY)$	MNXR101574		https://www.metanetx.org/equa_info/$1				False			METANETX.REACTION							metanetx.reaction	metanetx.reaction										
-metlin	Metabolite and Tandem Mass Spectrometry Database	http://masspec.scripps.edu/	The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.	^\d{4}$	1455		http://metlin.scripps.edu/metabo_info.php?molid=$1				False			METLIN							metlin	metlin										
-mex	Metabolome Express	https://www.metabolome-express.org/	A public place to process, interpret and share GC/MS metabolomics datasets.	^\d+$	36		https://www.metabolome-express.org/datasetview.php?datasetid=$1				False			MEX							mex	mex										
-mf	Mental Functioning Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.	^\d{7}$	0000091	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MF_$1				False	MF		MF	MF								mf	mf	MF							
-mfmo	Mammalian Feeding Muscle Ontology	https://github.com/rdruzinsky/feedontology	The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.	^\d{7}$	0000208	druzinsk@uic.edu	http://purl.obolibrary.org/obo/MFMO_$1				False	MFMO		MFMO	MFMO								mfmo	mfmo	MFMO							
-mfo	Medaka fish anatomy and development		A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, <i>Oryzias latipes</i>.			Thorsten.Henrich@embl-heidelberg.de	http://purl.obolibrary.org/obo/MFO_$1				True	MFO		MFO	MFO								mfo				mfo					
-mfoem	Emotion Ontology	https://github.com/jannahastings/emotion-ontology	An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.	^\d{6}$	000204	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOEM_$1				False	MFOEM		MFOEM	MFOEM								mfoem	mfoem	MFOEM							
-mfomd	Mental Disease Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).	^\d{7}$	0000046	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOMD_$1				False	MFOMD		MFOMD	MFOMD								mfomd	mfomd	MFOMD							
-mge	Aclame	http://aclame.ulb.ac.be/	ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.	^\d+$	2		http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1				False										mge	mge										
-mgi	Mouse Genome Informatics	http://www.informatics.jax.org/	The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.	^\d+$	6017782		http://www.informatics.jax.org/accession/MGI:$1			MGD|MGI	False			MGI		MGI				3274	mgi	mgi					mgi	MGI	P671			
-mgnify.analysis	MGnify Analysis	https://www.ebi.ac.uk/metagenomics/	Analyses of microbiome data within MGnify	^MGYA\d+$	MGYA00002270		https://www.ebi.ac.uk/metagenomics/analyses/$1				False																					
-mgnify.proj	MGnify Project	https://www.ebi.ac.uk/metagenomics	MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.	^[A-Z]+[0-9]+$	ERP004492		https://www.ebi.ac.uk/metagenomics/projects/$1				False										mgnify.proj	mgnify.proj										
-mgnify.samp	MGnify Sample	https://www.ebi.ac.uk/metagenomics	The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.	^[A-Z]+[0-9]+$	SRS086444		https://www.ebi.ac.uk/metagenomics/samples/$1				False										mgnify.samp	mgnify.samp										
-mi	Molecular Interactions Controlled Vocabulary	https://github.com/HUPO-PSI/psi-mi-CV	The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.	^\d{4}$	0058	pporras@ebi.ac.uk	https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1			PSI-MI	False	MI		PSIMI	MI						mi	psimi	mi	mi	MI		psi.mi					
-miaa	Minimal Information About Anatomy ontology										True																					
+taxonomic class with which they are associated."	^C\d{8}$	C00000001		http://www.knapsackfamily.com/knapsack_core/information.php?word=$1				False			KNAPSACK							knapsack	knapsack								P2064			
+kupo	Kidney and Urinary Pathway Ontology	http://www.kupkb.org/		^\d{7}$	0001009						True																						
+kyinno	KYinno cell lines	https://www.kyinno.com/	Cell line collections		KC-0979		https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf				False					KYinno																	
+labo	clinical LABoratory Ontology	https://github.com/OpenLHS/LABO	LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.	^\d{7}$	0000124	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/LABO_$1				False	LABO			LABO								labo	labo	LABO								
+lbo	Livestock Breed Ontology	http://bioportal.bioontology.org/ontologies/LBO	A vocabulary for cattle, chicken, horse, pig, and sheep breeds.	^\d{7}$	0000487	caripark@iastate.edu		https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl	https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.obo		False	LBO	LBO		LBO									lbo									
+lei	Global LEI Index	https://www.gleif.org/	Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.	^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$	HWUPKR0MPOU8FGXBT394		https://www.gleif.org/lei/$1				False										lei	lei											
+lepao	Lepidoptera Anatomy Ontology	https://github.com/insect-morphology/lepao	The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.	^\d{7}$	0000005	lagonzalezmo@unal.edu.co	http://purl.obolibrary.org/obo/LEPAO_$1				False	LEPAO			LEPAO								lepao	lepao									
+lgai.cede	LG Chemical Entity Detection Dataset (LGCEDe)	https://www.lgresearch.ai	LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).	^LGCEDe-S-\d{9}$	LGCEDe-S-000002244		https://s3.us-east-2.amazonaws.com/lg.cede/$1				False										lgai.cede												
+lgic	Ligand-Gated Ion Channel database	https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php	The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.	^\w+$	5HT3Arano		https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php				True			LGIC							lgic	lgic											
+licebase	LiceBase	https://licebase.org	Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon,  significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.	^[A-Za-z0-9\-\/]+$	EMLSAT00000003403		https://licebase.org/?q=$1				False			LICEBASE							licebase	licebase						r3d100013547					
+ligandbook	LigandBook	https://ligandbook.org/	Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.	^[0-9]+$	785		https://ligandbook.org/package/$1				False										ligandbook	ligandbook											
+ligandbox	LigandBox	http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en	LigandBox is a database of 3D compound structures.  Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.	^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$	D00001		http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1				False			LIGANDBOX							ligandbox	ligandbox											
+ligandexpo	Ligand Expo	http://ligand-depot.rutgers.edu/index.html	Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.	^(\w){3}$	ABC		http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid				False			LIGANDEXPO							ligandexpo	ligandexpo					ligandexpo						
+ligea	Cancer cell LInes GEne fusions portAl	http://hpc-bioinformatics.cineca.it/fusion/main	Polymorphism and mutation databases		CCLE_867		http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1				False					LiGeA																	
+limore	Liver Cancer Model Repository	https://www.picb.ac.cn/limore/home	Cell line databases/resources		Li7		https://www.picb.ac.cn/limore/cellLines/single?para=$1				False					LIMORE																	
+lincs.cell	LINCS Cell	http://lincsportal.ccs.miami.edu/cells/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to  create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.	^(LCL|LDC|ES|LSC|LPC)-\d+$	LCL-2085		http://lincsportal.ccs.miami.edu/cells/#/view/$1			LINCS_LDP	False			LINCS.CELL		LINCS_LDP					lincs.cell	lincs.cell											
+lincs.data	LINCS Data	http://lincsportal.ccs.miami.edu/datasets/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).	^[EL]D[SG]-\d+$	LDS-1110		http://lincsportal.ccs.miami.edu/datasets/#/view/$1				False			LINCS.DATA							lincs.data	lincs.data											
+lincs.protein	LINCS Protein	http://lincs.hms.harvard.edu/db/proteins/	The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.	^\d+$	200282		https://lincs.hms.harvard.edu/db/proteins/$1				False			LINCS.PROTEIN							lincs.protein	lincs.protein											
+lincs.smallmolecule	LINCS Small Molecule	http://lincsportal.ccs.miami.edu/SmallMolecules/	The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).	^LSM-\d+$	LSM-6306		http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1			lincs	False			LINCS.SMALLMOLECULE							lincs.smallmolecule	lincs.smallmolecule											
+linguist	Linguist	https://github.com/github/linguist	Registry of programming languages for the Linguist program for detecting and highlighting programming languages.	^[a-zA-Z0-9 +#'*]+$	Python		https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1				False										linguist												
+lipidbank	LipidBank	http://lipidbank.jp/index.html	LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.	^\w+\d+$	BBA0001		http://lipidbank.jp/cgi-bin/detail.cgi?id=$1				False			LIPIDBANK						2665	lipidbank	lipidbank					lipidbank						
+lipidmaps	LIPID MAPS	http://www.lipidmaps.org	The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.	^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$	LMPR0102010012		http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1			LIPID MAPS|LIPID_MAPS_class|LIPID_MAPS_instance	False			LIPIDMAPS			000564			2625	lipidmaps	lipidmaps					lipidmaps			P2063			
+lipro	Lipid Ontology		An ontology representation of the LIPIDMAPS nomenclature classification.			bakerc@unb.ca	http://purl.obolibrary.org/obo/LIPRO_$1				True	LIPRO		LIPRO	LIPRO								lipro										
+lncipedia	LNCipedia	https://lncipedia.org	A comprehensive compendium of human long non-coding RNAs		SNHG3						False																						
+loggerhead	Loggerhead nesting	http://www.mesquiteproject.org/ontology/Loggerhead/index.html				peteremidford@yahoo.com	http://purl.obolibrary.org/obo/LOGGERHEAD_$1				True			LOGGERHEAD									loggerhead										
+loinc	Logical Observation Identifiers Names and Codes	https://loinc.org/	The international standard for identifying health measurements, observations, and documents.		LL379-9		https://loinc.org/$1			LNC	False	LOINC			LOINC																		
+lonza	Lonza	https://knowledge.lonza.com	Contains information about cells and data sheets related to transfection.	^\d+$	968		https://knowledge.lonza.com/cell?id=$1				False					Lonza																	
+lotus	LOTUS Initiative for Open Natural Products Research	https://lotus.naturalproducts.net	LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.	^LTS\d{7}$	LTS0004651	adriano.rutz@ik.me	https://lotus.naturalproducts.net/compound/lotus_id/$1				False																						
+lpt	Livestock Product Trait Ontology	https://github.com/AnimalGenome/livestock-product-trait-ontology	The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.	^\d+$	0000001	caripark@iastate.edu	http://purl.obolibrary.org/obo/LPT_$1	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl	https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.obo		False	LPT	LPT	LPT	LPT																		
+lrg	Locus Reference Genomic	http://www.lrg-sequence.org/	A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.	^LRG_\d+$	LRG_1		ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml				False			LRG							lrg	lrg											
+lspci	Laboratory of Systems Pharmacology Compound	https://labsyspharm.github.io/lspci/	Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)	^\d+$	1		https://labsyspharm.github.io/lspci/$1				False																						
+lter	Long Term Ecological Research Controlled Vocabulary	https://vocab.lternet.edu/vocab/vocab/index.php	Ecological terms	^\d+$	182		https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1				False																						
+ma	Mouse adult gross anatomy	https://github.com/obophenotype/mouse-anatomy-ontology	A structured controlled vocabulary of the adult anatomy of the mouse (Mus)	^\d+$	0002502	Terry.Hayamizu@jax.org	http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1				False	MA		MA	MA						ma	ma	ma	ma	MA		ma						
+macie	Mechanism, Annotation and Classification in Enzymes	https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html	MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.	^M\d{4}$	M0001		https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1				False			MACIE						2641	macie	macie					macie						
+maizegdb.locus	MaizeGDB Locus	http://www.maizegdb.org/	MaizeGDB is the maize research community's central repository for genetics and genomics information.	^\d+$	25011		http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1			MaizeGDB	False			MAIZEGDB.LOCUS							maizegdb.locus	maizegdb.locus					maizegdb	r3d100010795	MaizeGDB				
+mamo	Mathematical modeling ontology	http://sourceforge.net/p/mamo-ontology/wiki/Home/	The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.	^\d{7}$	0000026		http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1				True	MAMO		MAMO	MAMO						mamo	mamo	mamo	mamo	MAMO								
+mao	Multiple alignment	http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html				julie@igbmc.u-strasbg.fr	http://purl.obolibrary.org/obo/MAO_$1				True			MAO									mao				mao						
+massbank	MassBank	http://www.massbank.jp	MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).	^[A-Z]{2}[A-Z0-9][0-9]{5}$	PB000166		http://www.massbank.jp/RecordDisplay?id=$1				False			MASSBANK							massbank	massbank								P6689			
+massive	MassIVE	https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp	MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.	^MSV\d+$	MSV000082131		https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1				False			MASSIVE							massive	massive							MassIVE				
+mat	Minimal Anatomical Terminology			^\d{7}$	0000000	j.bard@ed.ac.uk	http://purl.obolibrary.org/obo/MAT_$1				True	MAT		MAT	MAT								mat										
+matrixdb	MatrixDB	http://matrixdb.univ-lyon1.fr/	MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides		MULT_4_VAR1_bovine		http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1				False																matrixdb	r3d100010672					
+matrixdb.association	MatrixDB Association	http://matrixdb.univ-lyon1.fr/	MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$	P00747__P07355		http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association				False			MATRIXDB.ASSOCIATION							matrixdb.association	matrixdb.association											
+maxo	Medical Action Ontology	https://github.com/monarch-initiative/MAxO	An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.	^\d{7}$	0000008	Leigh.Carmody@jax.org	http://purl.obolibrary.org/obo/MAXO_$1				False	MAXO			MAXO								maxo	maxo	MAXO								
+mba	Mouse Brain Atlas	https://mouse.brain-map.org	A controlled vocabulary to support the study of transcription in the mouse brain	^\d+$	688				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo		False																						
+mcc	Cell Line Ontology [derivative]										True				MCCL																		
+mco	Microbial Conditions Ontology	https://github.com/microbial-conditions-ontology/microbial-conditions-ontology	Microbial Conditions Ontology is an ontology...	^\d+$	0000858	citlalli.mejiaalmonte@gmail.com	http://purl.obolibrary.org/obo/MCO_$1				False	MCO			MCO								mco	mco	MCO								
+mdm	Medical Data Models	https://medical-data-models.org/	The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.	^\d+$	4776		https://medical-data-models.org/forms/$1				False	MDM		MDM	MDM						mdm	mdm											
+meddra	Medical Dictionary for Regulatory Activities Terminology	http://bioportal.bioontology.org/ontologies/MEDDRA	The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).	^\d+$	10015919		http://purl.bioontology.org/ontology/MEDDRA/$1			MEDRA|MeDRA|MedDRA|Medical Dictionary for Regulatory Activities	False	MEDDRA		MEDDRA	MEDDRA						meddra	meddra								P3201			
+medgen	Human Medical Genetics	https://www.ncbi.nlm.nih.gov/medgen/	MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.	^[CN]*\d{4,7}$	760050		https://www.ncbi.nlm.nih.gov/medgen/$1				False			MedGen							medgen	medgen											
+medlineplus	MedlinePlus Health Topics	http://www.nlm.nih.gov/medlineplus/	MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.	^\d+$	002804		http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm				False	MEDLINEPLUS		MEDLINEPLUS	MEDLINEPLUS						medlineplus	medlineplus											
+merops.clan	MEROPS Clan	https://www.ebi.ac.uk/merops	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.		IA		https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1				False																				merops		
+merops.entry	MEROPS Entry	http://merops.sanger.ac.uk/index.htm	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.	^[SCTAGMNUI]\d{2}\.([AB]\d{2}|\d{3})$	I31.952		https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1			merops.inhibitor	False			MEROPS.INHIBITOR						2629	merops.inhibitor	merops.inhibitor					merops		MEROPS				
+merops.family	MEROPS Family	http://merops.sanger.ac.uk/index.htm	The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.	^[SCTAGMNU]\d+$	S1		https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1				False			MEROPS.FAMILY							merops.family	merops.family									merops		
+mesh	Medical Subject Headings	http://id.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.	^(C|D)\d{6,9}$	C063233		https://meshb.nlm.nih.gov/record/ui?ui=$1			MESH|MESHA|MESHC|MESHCS|MESHD|MESHPP|MESH_DESCRIPTOR_UI|MESH_SUPPLEMENTAL_RECORD_UI|MSH	False	MESH		MESH	MESH	MeSH				1177	mesh	mesh					mesh			P486			
+mesh.2012	MeSH 2012	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.	^[A-Za-z0-9]+$	17186		http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded				False			MESH.2012							mesh.2012	mesh.2012											
+mesh.2013	MeSH 2013	http://www.nlm.nih.gov/mesh/	MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.	^[A-Za-z0-9]+$	17165		http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded				False			MESH.2013							mesh.2013	mesh.2013											
+metabolights	MetaboLights Compound	https://www.ebi.ac.uk/metabolights/	MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.	^MTBLS\d+$	MTBLS1		https://www.ebi.ac.uk/metabolights/$1				False			METABOLIGHTS		MetaboLights					metabolights	metabolights						r3d100011556		P3890			
+metacyc.compound	Metabolic Encyclopedia of metabolic and other pathways	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	CPD-10330		https://metacyc.org/compound?orgid=META&id=$1			MetaCyc	False			METACYC.COMPOUND							metacyc.compound	metacyc.compound						r3d100011294					
+metacyc.reaction	MetaCyc Reaction	https://metacyc.org	MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.	^[A-Za-z0-9+_.%-:]+$	RXN-14904		https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1				False			METACYC.REACTION							metacyc.reaction	metacyc.reaction											
+metanetx.chemical	MetaNetX chemical	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.	^(MNXM\d+|BIOMASS|WATER)$	MNXM1723		https://www.metanetx.org/chem_info/$1				False			METANETX.CHEMICAL							metanetx.chemical	metanetx.chemical											
+metanetx.compartment	MetaNetX compartment	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.	^(MNX[CD]\d+|BOUNDARY|IN|OUT)$	MNXC15		https://www.metanetx.org/comp_info/$1				False			METANETX.COMPARTMENT							metanetx.compartment	metanetx.compartment											
+metanetx.reaction	MetaNetX reaction	https://www.metanetx.org/	MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.	^(MNXR\d+|EMPTY)$	MNXR101574		https://www.metanetx.org/equa_info/$1				False			METANETX.REACTION							metanetx.reaction	metanetx.reaction											
+metlin	Metabolite and Tandem Mass Spectrometry Database	http://masspec.scripps.edu/	The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.	^\d{4}$	1455		http://metlin.scripps.edu/metabo_info.php?molid=$1				False			METLIN							metlin	metlin						r3d100012311					
+mex	Metabolome Express	https://www.metabolome-express.org/	A public place to process, interpret and share GC/MS metabolomics datasets.	^\d+$	36		https://www.metabolome-express.org/datasetview.php?datasetid=$1				False			MEX							mex	mex											
+mf	Mental Functioning Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.	^\d{7}$	0000091	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MF_$1				False	MF		MF	MF								mf	mf	MF								
+mfmo	Mammalian Feeding Muscle Ontology	https://github.com/rdruzinsky/feedontology	The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.	^\d{7}$	0000208	druzinsk@uic.edu	http://purl.obolibrary.org/obo/MFMO_$1				False	MFMO		MFMO	MFMO								mfmo	mfmo	MFMO								
+mfo	Medaka fish anatomy and development		A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, <i>Oryzias latipes</i>.			Thorsten.Henrich@embl-heidelberg.de	http://purl.obolibrary.org/obo/MFO_$1				True	MFO		MFO	MFO								mfo				mfo						
+mfoem	Emotion Ontology	https://github.com/jannahastings/emotion-ontology	An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.	^\d{6}$	000204	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOEM_$1				False	MFOEM		MFOEM	MFOEM								mfoem	mfoem	MFOEM								
+mfomd	Mental Disease Ontology	https://github.com/jannahastings/mental-functioning-ontology	The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).	^\d{7}$	0000046	janna.hastings@gmail.com	http://purl.obolibrary.org/obo/MFOMD_$1				False	MFOMD		MFOMD	MFOMD								mfomd	mfomd	MFOMD								
+mge	Aclame	http://aclame.ulb.ac.be/	ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.	^\d+$	2		http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1				False										mge	mge											
+mgi	Mouse Genome Informatics	http://www.informatics.jax.org/	The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.	^\d+$	6017782		http://www.informatics.jax.org/accession/MGI:$1			MGD|MGI	False			MGI		MGI				3274	mgi	mgi					mgi		MGI	P671			
+mgnify.analysis	MGnify Analysis	https://www.ebi.ac.uk/metagenomics/	Analyses of microbiome data within MGnify	^MGYA\d+$	MGYA00002270		https://www.ebi.ac.uk/metagenomics/analyses/$1				False																						
+mgnify.proj	MGnify Project	https://www.ebi.ac.uk/metagenomics	MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.	^[A-Z]+[0-9]+$	ERP004492		https://www.ebi.ac.uk/metagenomics/projects/$1				False										mgnify.proj	mgnify.proj											
+mgnify.samp	MGnify Sample	https://www.ebi.ac.uk/metagenomics	The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.	^[A-Z]+[0-9]+$	SRS086444		https://www.ebi.ac.uk/metagenomics/samples/$1				False										mgnify.samp	mgnify.samp											
+mi	Molecular Interactions Controlled Vocabulary	https://github.com/HUPO-PSI/psi-mi-CV	The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.	^\d{4}$	0058	pporras@ebi.ac.uk	https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1			PSI-MI	False	MI		PSIMI	MI						mi	psimi	mi	mi	MI		psi.mi						
+miaa	Minimal Information About Anatomy ontology										True																						
 miapa	Minimum Anformation About a Phylogenetic Analysis Ontology	http://www.evoio.org/wiki/MIAPA	"The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.
 
-This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."	^\d{7}$	0000010	hilmar.lapp@duke.edu	http://purl.obolibrary.org/obo/MIAPA_$1				False	MIAPA		MIAPA	MIAPA								miapa	miapa	MIAPA							
-micro	Ontology of Prokaryotic Phenotypic and Metabolic Characters	https://github.com/carrineblank/MicrO	An ontology of prokaryotic phenotypic and metabolic characters	^\d{7}$	0002999	carrine.blank@umontana.edu	http://purl.obolibrary.org/obo/MICRO_$1				False	MICRO		MICRO									micro	micro	MicrO							
-microscope	MicroScope	http://www.genoscope.cns.fr/agc/microscope	MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.	^\d+$	5601141		http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1				False			MICROSCOPE							microscope	microscope										
-microsporidia	MicrosporidiaDB	http://microsporidiadb.org/micro/	MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	ECU03_0820i		http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			MICROSPORIDIA							microsporidia	microsporidia					microsporidia					
-millipore	Merck Millipore (EMD Millipore)	https://www.merckmillipore.com/	Cell line collections		SCC111		https://www.merckmillipore.com/catalogue/item/$1				False					Millipore																
-mimodb	MimoDB	http://immunet.cn/bdb/	MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.	^\d+$	1		http://immunet.cn/bdb/index.php/mimoset/$1				False			MIMODB							mimodb	mimodb					mimodb					
-minid	Minimal Viable Identifier	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.	^[A-Za-z0-9]+$	b97957		https://hdl.handle.net/hdl:20.500.12582/$1				False			MINID							minid	minid										
-minid.test	MINID Test	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. 	^[A-Za-z0-9]+$	3SBPLMKKVEVR		https://hdl.handle.net/hdl:20.500.12633/$1				False										minid.test											
-mint	Molecular Interaction Database	http://mint.bio.uniroma2.it/mint/	The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.	^MINT\-\d{1,7}$	MINT-10000		http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$1				False			MINT						2615	mint	mint					mint	MINT				
-mipmod	MIPModDB	http://bioinfo.iitk.ac.in/MIPModDB	MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.	^\w+$	HOSAPI0399		http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1				False			MIPMOD							mipmod	mipmod					mipmod					
-mir	Identifiers.org Registry	https://registry.identifiers.org/registry	"The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or ""PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."	^\d{8}$	00100037		"https://registry.identifiers.org/registry?query=""MIR:$1"""				False			MIR							mir	mir										
-mirbase	miRBase pre-miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).	^MI\d{7}$	MI0026471		http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1				False			MIRBASE						2642	mirbase	mirbase					mirbase		P2870			
-mirbase.family	miRBase Families	http://www.mirbase.org/	The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.		MIPF0000002		http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1			MIRBASE_FAMILY	False																					
-mirbase.mature	miRBase mature miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.	^MIMAT\d{7}$	MIMAT0046872		http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1			MIRBASEM	False			MIRBASE.MATURE							mirbase.mature	mirbase.mature					mirbase.mature		P2871			
-mirex	mirEX	http://comgen.pl/mirex/?page=home	mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.	^\d+(\w+)?$	165a		http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes				False			MIREX							mirex	mirex										
-miriam	Identifiers.org namespace	https://www.ebi.ac.uk	Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.	^[a-z_\.]+$	pubmed		https://registry.identifiers.org/registry/$1			identifiers.namespace	False									1162	identifiers.namespace											
-miriam.collection	MIRIAM Registry collection	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.	^MIR:000\d{5}$	MIR:00000008		https://www.ebi.ac.uk/miriam/main/$1				True			MIRIAM.COLLECTION							miriam.collection	miriam.collection										
-miriam.resource	MIRIAM Registry resource	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.	^MIR:001\d{5}$	MIR:00100005		https://www.ebi.ac.uk/miriam/main/resources/$1				False			MIRIAM.RESOURCE							miriam.resource	miriam.resource					miriam.resource					
-mirnao	microRNA Ontology	http://code.google.com/p/mirna-ontology/	An application ontology for use with miRNA databases.			topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRNAO_$1				True	MIRNAO		MIRNAO	MIRNAO								mirnao		miRNAO							
-mirnest	miRNEST	http://rhesus.amu.edu.pl/mirnest/copy/	miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.	^MNEST\d+$	MNEST029358		http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1				False			MIRNEST							mirnest	mirnest					mirnest					
-miro	Mosquito insecticide resistance	https://github.com/VEuPathDB-ontology/MIRO	Application ontology for entities related to insecticide resistance in mosquitos	^\d{8}$	40000617	louis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRO_$1		http://purl.obolibrary.org/obo/miro.obo		True	MIRO		MIRO	MIRO								miro	miro	MIRO							
-mirtarbase	miRTarBase	http://mirtarbase.mbc.nctu.edu.tw/	miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.	^MIRT\d{6}$	MIRT000002		http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1				False			MIRTARBASE							mirtarbase	mirtarbase										
-mirte	miRNA Target Prediction at EMBL	http://www.russelllab.org/miRNAs/	This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs		miR-1						False																					
-mlc	MLCommons Association	https://mlcommons.org/en/	MLCommons Association artifacts, including benchmark results, datasets, and saved models.	^[0-9a-zA-Z\.\-\_]+$	0.7-123		https://www.mlcommons.org/mlc-id/$1				False										mlc											
-mmdb	Molecular Modeling Database	http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure	The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.	^\d{1,5}$	50885		http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1				False			MMDB						2667	mmdb	mmdb					mmdb					
-mmmp.biomaps	Melanoma Molecular Map Project Biomaps	http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp	A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.	^\d+$	37		http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1			mmmp:biomaps	False			MMMP:BIOMAPS							mmmp:biomaps	biomaps										
-mmo	Measurement method ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000	A representation of the variety of methods used to make clinical and phenotype measurements. 	^\d{7}$	0000574	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/MMO_$1				False	MMO		MMO	MMO								mmo	mmo	MMO							
-mmp.cat	MarCat	https://mmp.sfb.uit.no/databases/marcat/	MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.	^MMP\d+.\d+$	MMP743597.11		https://mmp.sfb.uit.no/databases/marcat/#/records/$1				False			MMP.CAT							mmp.cat	mmp.cat										
-mmp.db	MarDB	https://mmp.sfb.uit.no/databases/mardb/	MarDB includes all sequenced marine microbial genomes regardless of level of completeness.	^MMP\d+.\d+$	MMP02954345.1		https://mmp.sfb.uit.no/databases/mardb/#/records/$1				False			MMP.DB							mmp.db	mmp.db										
-mmp.fun	MarFun	https://mmp.sfb.uit.no/databases/marfun	MarFun is manually curated database for marine fungi which is a part of the MAR databases.	^MMP\d+.\d+$	MMP3888430		https://mmp.sfb.uit.no/databases/marfun/#/records/$1				False										mmp.fun											
-mmp.ref	MarRef	https://mmp.sfb.uit.no/databases/marref/	MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.	^MMP\d+.\d+$	MMP3312982.2		https://mmp.sfb.uit.no/databases/marref/#/records/$1				False			MMP.REF							mmp.ref	mmp.ref										
-mmrrc	Mutant Mouse Resource and Research Centers	https://www.mmrrc.org	The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.	^\d+$	70		http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1				False			MMRRC		MMRRC					mmrrc	mmrrc										
-mmsl	Multum MediSource Lexicon	https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html	The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.	^\d+$	3355					MMSL_CODE	False																					
-mmusdv	Mouse Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv	Life cycle stages for Mus Musculus	^\d{7}$	0000066	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/MMUSDV_$1			MmusDv	False	MMUSDV		MMUSDV	MMUSDV								mmusdv	mmusdv	MMUSDV							
-mo	Microarray experimental conditions	http://mged.sourceforge.net/ontologies/MGEDontology.php	The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.	^\w+$	ArrayGroup	stoeckrt@pcbi.upenn.edu	http://purl.obolibrary.org/obo/MO_$1				True	MO		MO	MO						mo	mo	mo									
-mobidb	MobiDB	http://mobidb.bio.unipd.it	MobiDB is a database of protein disorder and mobility annotations.	^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$	P10636		https://mobidb.org/$1				False			MOBIDB							mobidb	mobidb						MobiDB			uniprot	
-mod	Protein modification	http://www.psidev.info/MOD	The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.	^\d{5}$	01467	pierre-alain.binz@chuv.ch	https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:$1			PSI-MOD	False	PSIMOD		MOD	PSIMOD						mod	mod	mod	mod	MOD		psi.mod					
-modeldb	ModelDB	http://senselab.med.yale.edu/ModelDB/	ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.	^\d+$	45539		http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1				False			MODELDB						2669	modeldb	modeldb					modeldb					
-molbase	Molbase	http://www.molbase.com/	Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.	^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$	128796-39-4		http://www.molbase.com/en/index.php?app=search&search_keyword=$1				False			MOLBASE							molbase	molbase										
-molbase.sheffield	MolBase	https://winter.group.shef.ac.uk/molbase/	An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.	^\d+$	1868						True																					
-molmedb	MolMeDB	http://www.upol.cz/en/	MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. 	^[m,M]{2}[0-9]{5}[0-9]*$	MM00040		https://molmedb.upol.cz/mol/$1				False										molmedb											
-mondo	Monarch Disease Ontology	https://monarch-initiative.github.io/mondo	A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.	^\d{7}$	0000001	nicole@tislab.org	http://purl.obolibrary.org/obo/MONDO_$1		http://purl.obolibrary.org/obo/mondo.obo		False	MONDO		MONDO	MONDO								mondo	mondo	MONDO				P5270			
-mop	Molecular Process Ontology	https://github.com/rsc-ontologies/rxno	MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.	^\d{7}$	0000079	batchelorc@rsc.org	http://purl.obolibrary.org/obo/MOP_$1		https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo		False	MOP		MOP	MOP								mop	mop	MOP							
+This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."	^\d{7}$	0000010	hilmar.lapp@duke.edu	http://purl.obolibrary.org/obo/MIAPA_$1				False	MIAPA		MIAPA	MIAPA								miapa	miapa	MIAPA								
+micro	Ontology of Prokaryotic Phenotypic and Metabolic Characters	https://github.com/carrineblank/MicrO	An ontology of prokaryotic phenotypic and metabolic characters	^\d{7}$	0002999	carrine.blank@umontana.edu	http://purl.obolibrary.org/obo/MICRO_$1				False	MICRO		MICRO									micro	micro	MicrO								
+microscope	MicroScope	http://www.genoscope.cns.fr/agc/microscope	MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.	^\d+$	5601141		http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1				False			MICROSCOPE							microscope	microscope						r3d100012928					
+microsporidia	MicrosporidiaDB	http://microsporidiadb.org/micro/	MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	ECU03_0820i		http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			MICROSPORIDIA							microsporidia	microsporidia					microsporidia						
+millipore	Merck Millipore (EMD Millipore)	https://www.merckmillipore.com/	Cell line collections		SCC111		https://www.merckmillipore.com/catalogue/item/$1				False					Millipore																	
+mimodb	MimoDB	http://immunet.cn/bdb/	MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.	^\d+$	1		http://immunet.cn/bdb/index.php/mimoset/$1				False			MIMODB							mimodb	mimodb					mimodb						
+minid	Minimal Viable Identifier	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.	^[A-Za-z0-9]+$	b97957		https://hdl.handle.net/hdl:20.500.12582/$1				False			MINID							minid	minid											
+minid.test	MINID Test	https://fair-research.org	Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. 	^[A-Za-z0-9]+$	3SBPLMKKVEVR		https://hdl.handle.net/hdl:20.500.12633/$1				False										minid.test												
+mint	Molecular Interaction Database	http://mint.bio.uniroma2.it/mint/	The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.	^MINT\-\d{1,7}$	MINT-10000		http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$1				False			MINT						2615	mint	mint					mint		MINT				
+mipmod	MIPModDB	http://bioinfo.iitk.ac.in/MIPModDB	MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.	^\w+$	HOSAPI0399		http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1				False			MIPMOD							mipmod	mipmod					mipmod						
+mir	Identifiers.org Registry	https://registry.identifiers.org/registry	"The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or ""PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."	^\d{8}$	00100037		"https://registry.identifiers.org/registry?query=""MIR:$1"""				False			MIR							mir	mir											
+mirbase	miRBase pre-miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).	^MI\d{7}$	MI0026471		http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1				False			MIRBASE						2642	mirbase	mirbase					mirbase	r3d100010566		P2870			
+mirbase.family	miRBase Families	http://www.mirbase.org/	The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.		MIPF0000002		http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1			MIRBASE_FAMILY	False																						
+mirbase.mature	miRBase mature miRNA	http://www.mirbase.org/	The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.	^MIMAT\d{7}$	MIMAT0046872		http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1			MIRBASEM	False			MIRBASE.MATURE							mirbase.mature	mirbase.mature					mirbase.mature			P2871			
+mirex	mirEX	http://comgen.pl/mirex/?page=home	mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.	^\d+(\w+)?$	165a		http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes				False			MIREX							mirex	mirex											
+miriam	Identifiers.org namespace	https://www.ebi.ac.uk	Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.	^[a-z_\.]+$	pubmed		https://registry.identifiers.org/registry/$1			identifiers.namespace	False									1162	identifiers.namespace												
+miriam.collection	MIRIAM Registry collection	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.	^MIR:000\d{5}$	MIR:00000008		https://www.ebi.ac.uk/miriam/main/$1				True			MIRIAM.COLLECTION							miriam.collection	miriam.collection											
+miriam.resource	MIRIAM Registry resource	https://www.ebi.ac.uk/miriam/	MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.	^MIR:001\d{5}$	MIR:00100005		https://www.ebi.ac.uk/miriam/main/resources/$1				False			MIRIAM.RESOURCE							miriam.resource	miriam.resource					miriam.resource						
+mirnao	microRNA Ontology	http://code.google.com/p/mirna-ontology/	An application ontology for use with miRNA databases.			topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRNAO_$1				True	MIRNAO		MIRNAO	MIRNAO								mirnao		miRNAO								
+mirnest	miRNEST	http://rhesus.amu.edu.pl/mirnest/copy/	miRNEST is a database of animal, plant and virus microRNAs, containing  miRNA predictions conducted on Expressed Sequence Tags of animal and  plant species.	^MNEST\d+$	MNEST029358		http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1				False			MIRNEST							mirnest	mirnest					mirnest						
+miro	Mosquito insecticide resistance	https://github.com/VEuPathDB-ontology/MIRO	Application ontology for entities related to insecticide resistance in mosquitos	^\d{8}$	40000617	louis@imbb.forth.gr	http://purl.obolibrary.org/obo/MIRO_$1		http://purl.obolibrary.org/obo/miro.obo		True	MIRO		MIRO	MIRO								miro	miro	MIRO								
+mirtarbase	miRTarBase	http://mirtarbase.mbc.nctu.edu.tw/	miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.	^MIRT\d{6}$	MIRT000002		http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1				False			MIRTARBASE							mirtarbase	mirtarbase											
+mirte	miRNA Target Prediction at EMBL	http://www.russelllab.org/miRNAs/	This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs		miR-1						False																						
+mlc	MLCommons Association	https://mlcommons.org/en/	MLCommons Association artifacts, including benchmark results, datasets, and saved models.	^[0-9a-zA-Z\.\-\_]+$	0.7-123		https://www.mlcommons.org/mlc-id/$1				False										mlc												
+mmdb	Molecular Modeling Database	http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure	The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.	^\d{1,5}$	50885		http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1				False			MMDB						2667	mmdb	mmdb					mmdb						
+mmmp.biomaps	Melanoma Molecular Map Project Biomaps	http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp	A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.	^\d+$	37		http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1			mmmp:biomaps	False			MMMP:BIOMAPS							mmmp:biomaps	biomaps											
+mmo	Measurement method ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000	A representation of the variety of methods used to make clinical and phenotype measurements. 	^\d{7}$	0000574	jrsmith@mcw.edu	http://purl.obolibrary.org/obo/MMO_$1				False	MMO		MMO	MMO								mmo	mmo	MMO								
+mmp.cat	MarCat	https://mmp.sfb.uit.no/databases/marcat/	MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.	^MMP\d+.\d+$	MMP743597.11		https://mmp.sfb.uit.no/databases/marcat/#/records/$1				False			MMP.CAT							mmp.cat	mmp.cat											
+mmp.db	MarDB	https://mmp.sfb.uit.no/databases/mardb/	MarDB includes all sequenced marine microbial genomes regardless of level of completeness.	^MMP\d+.\d+$	MMP02954345.1		https://mmp.sfb.uit.no/databases/mardb/#/records/$1				False			MMP.DB							mmp.db	mmp.db											
+mmp.fun	MarFun	https://mmp.sfb.uit.no/databases/marfun	MarFun is manually curated database for marine fungi which is a part of the MAR databases.	^MMP\d+.\d+$	MMP3888430		https://mmp.sfb.uit.no/databases/marfun/#/records/$1				False										mmp.fun												
+mmp.ref	MarRef	https://mmp.sfb.uit.no/databases/marref/	MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.	^MMP\d+.\d+$	MMP3312982.2		https://mmp.sfb.uit.no/databases/marref/#/records/$1				False			MMP.REF							mmp.ref	mmp.ref											
+mmrrc	Mutant Mouse Resource and Research Centers	https://www.mmrrc.org	The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.	^\d+$	70		http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1				False			MMRRC		MMRRC					mmrrc	mmrrc											
+mmsl	Multum MediSource Lexicon	https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html	The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.	^\d+$	3355					MMSL_CODE	False																						
+mmusdv	Mouse Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv	Life cycle stages for Mus Musculus	^\d{7}$	0000066	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/MMUSDV_$1			MmusDv	False	MMUSDV		MMUSDV	MMUSDV								mmusdv	mmusdv	MMUSDV								
+mo	Microarray experimental conditions	http://mged.sourceforge.net/ontologies/MGEDontology.php	The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.	^\w+$	ArrayGroup	stoeckrt@pcbi.upenn.edu	http://purl.obolibrary.org/obo/MO_$1				True	MO		MO	MO						mo	mo	mo										
+mobidb	MobiDB	http://mobidb.bio.unipd.it	MobiDB is a database of protein disorder and mobility annotations.	^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$	P10636		https://mobidb.org/$1				False			MOBIDB							mobidb	mobidb							MobiDB			uniprot	
+mod	Protein modification	http://www.psidev.info/MOD	The Proteomics Standards Initiative modification ontology (PSI-MOD)  aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.	^\d{5}$	01467	pierre-alain.binz@chuv.ch	https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:$1			PSI-MOD	False	PSIMOD		MOD	PSIMOD						mod	mod	mod	mod	MOD		psi.mod						
+modeldb	ModelDB	http://senselab.med.yale.edu/ModelDB/	ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.	^\d+$	45539		http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1				False			MODELDB						2669	modeldb	modeldb					modeldb	r3d100011330					
+molbase	Molbase	http://www.molbase.com/	Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.	^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$	128796-39-4		http://www.molbase.com/en/index.php?app=search&search_keyword=$1				False			MOLBASE							molbase	molbase											
+molbase.sheffield	MolBase	https://winter.group.shef.ac.uk/molbase/	An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.	^\d+$	1868						True																						
+molmedb	MolMeDB	http://www.upol.cz/en/	MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. 	^[m,M]{2}[0-9]{5}[0-9]*$	MM00040		https://molmedb.upol.cz/mol/$1				False										molmedb												
+mondo	Monarch Disease Ontology	https://monarch-initiative.github.io/mondo	A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.	^\d{7}$	0000001	nicole@tislab.org	http://purl.obolibrary.org/obo/MONDO_$1		http://purl.obolibrary.org/obo/mondo.obo		False	MONDO		MONDO	MONDO								mondo	mondo	MONDO					P5270			
+mop	Molecular Process Ontology	https://github.com/rsc-ontologies/rxno	MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.	^\d{7}$	0000079	batchelorc@rsc.org	http://purl.obolibrary.org/obo/MOP_$1		https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo		False	MOP		MOP	MOP								mop	mop	MOP								
 morpheus	Morpheus model repository	https://morpheus.gitlab.io/	"The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.
-"	^M[0-9]{4,}$	M0001		https://morpheus.gitlab.io/models/$1				False										morpheus											
-mp	Mammalian Phenotype Ontology	http://www.informatics.jax.org/searches/MP_form.shtml	The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.	^\d{7}$	0005452	drsbello@gmail.com	http://www.informatics.jax.org/searches/Phat.cgi?id=MP:$1				False	MP		MP	MP						mp	mp	mp	mp	MP		mp					
-mpath	Mouse pathology ontology	http://www.pathbase.net	A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes	^\d+$	728	pns12@hermes.cam.ac.uk	http://purl.obolibrary.org/obo/MPATH_$1		https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo	MPATH	False	MPATH		MPATH	MPATH								mpath	mpath	MPATH		mpath					
-mpid	Microbial Protein Interaction Database	http://www.jcvi.org/mpidb/about.php	The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.	^\d+$	172		http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1			mpidb	False			MPID							mpid	mpid										
-mpio	Minimum PDDI Information Ontology	https://github.com/MPIO-Developers/MPIO	An ontology of minimum information regarding potential drug-drug interaction information.	^\d{7}$	0000004	mbrochhausen@uams.edu	http://purl.obolibrary.org/obo/MPIO_$1				False	MPIO		MPIO	MPIO								mpio	mpio	MPIO							
-mro	MHC Restriction Ontology	https://github.com/IEDB/MRO	The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.	^\d{7}$	0000634	bpeters@lji.org	http://purl.obolibrary.org/obo/MRO_$1				False	MRO		MRO	MRO								mro	mro	MRO							
-ms	Mass spectrometry ontology	http://www.psidev.info/groups/controlled-vocabularies	The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.	^\d{7}$	1000560	gerhard.mayer@rub.de	https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:$1				False	MS		MS	MS						ms	ms	ms	ms	MS							
-msigdb	Molecular Signatures Database	https://www.gsea-msigdb.org	The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can	^M\d+$	M1		https://biopragmatics.github.io/providers/msigdb/$1			msig	False																					
-msio	Metabolomics Standards Initiative Ontology	https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO	an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.	^\d{7}$	0000111						False													msio								
-multicellds	MultiCellDS	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.		MCDS_S_0000000001		http://multicellds.org/MultiCellDB/$1				False																					
-multicellds.cell_line	MultiCellDS Digital Cell Line	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.	^MCDS_L_[a-zA-Z0-9]{1,10}$	MCDS_L_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.CELL_LINE							multicellds.cell_line	multicellds.cell_line								multicellds		
-multicellds.collection	MultiCellDS collection	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).	^MCDS_C_[a-zA-Z0-9]{1,10}$	MCDS_C_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.COLLECTION							multicellds.collection	multicellds.collection								multicellds		
-multicellds.snapshot	MultiCellDS Digital snapshot	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.	^MCDS_S_[a-zA-Z0-9]{1,10}$	MCDS_S_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.SNAPSHOT							multicellds.snapshot	multicellds.snapshot								multicellds		
-mw.project	Metabolomics Workbench Project	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^PR[0-9]{6}$	PR000001		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1				False			MW.PROJECT							mw.project	mw.project										
-mw.study	Metabolomics Workbench Study	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^ST[0-9]{6}$	ST000900		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1				False			MW.STUDY							mw.study	mw.study										
-myco.lepra	MycoBrowser leprae	http://mycobrowser.epfl.ch/leprosy.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.	^ML\w+$	ML0224		http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1				False			MYCO.LEPRA							myco.lepra	myco.lepra					myco.lepra					
-myco.marinum	MycoBrowser marinum	http://mycobrowser.epfl.ch/marinolist.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.	^MMAR\_\d+$	MMAR_2462		http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1				False			MYCO.MARINUM							myco.marinum	myco.marinum					myco.marinum					
-myco.smeg	MycoBrowser smegmatis	http://mycobrowser.epfl.ch/smegmalist.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.	^MSMEG\w+$	MSMEG_3769		http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1				False			MYCO.SMEG							myco.smeg	myco.smeg					myco.smeg					
-myco.tuber	TubercuList knowledge base	http://tuberculist.epfl.ch/	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.	^Rv\d{4}(A|B|c)?$	Rv1908c		http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1			TubercuList	False			MYCO.TUBER							myco.tuber	myco.tuber					tuberculist	TubercuList				
-mycobank	Fungal Nomenclature and Species Bank	http://www.mycobank.org/	MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.	^\d+$	349124		http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1				False			MYCOBANK							mycobank	mycobank					mycobank					
-mzspec	Universal Spectrum Identifier	http://proteomecentral.proteomexchange.org/	The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.	^.+$	PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2		http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1				False			MZSPEC							mzspec	mzspec										
-n2t	Name-to-Thing	https://n2t.net	An ARK resolver as well as resolver built with common prefixes as in Identifiers.org		chebi		https://n2t.net/$1:				False																					
-namerxn	NameRXN	https://www.nextmovesoftware.com/namerxn.html	The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).		4.2.78						False																					
-napdi	Natural Product-Drug Interaction Research Data Repository	https://repo.napdi.org/	The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).	^[0-9]+$	28		https://repo.napdi.org/study/$1				False			NAPDI							napdi	napdi										
-napp	Nucleic Acids Phylogenetic Profiling	http://napp.u-psud.fr/	NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.	^\d+$	351		http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1				False			NAPP							napp	napp					napp					
-narcis	National Academic Research and Collaborations Information System	http://www.narcis.nl	NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.	^oai\:cwi\.nl\:\d+$	oai:cwi.nl:4725		http://www.narcis.nl/publication/RecordID/$1				False			NARCIS							narcis	narcis										
-nasc	NASC code	http://arabidopsis.info/	The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.	^(\w+)?\d+$	N1899		http://arabidopsis.info/StockInfo?NASC_id=$1				False			NASC							nasc	nasc					nasc					
-nbn	National Bibliography Number	http://nbn-resolving.org/resolve_urn.htm	The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.	^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$	urn:nbn:fi:tkk-004781		http://nbn-resolving.org/resolver?identifier=$1&verb=redirect				False			NBN							nbn	nbn										
-nbo	Neuro Behavior Ontology	https://github.com/obo-behavior/behavior-ontology/	An ontology of human and animal behaviours and behavioural phenotypes	^\d{7}$	0000564	g.gkoutos@bham.ac.uk	http://purl.obolibrary.org/obo/NBO_$1		https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo		False	NBO		NBO	NBO								nbo	nbo	NBO							
-nbrc	NITE Biological Resource Center	http://www.nbrc.nite.go.jp/e/index.html	NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.	^\d+$	00001234		http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1				False			NBRC							nbrc	nbrc					nbrc					
-ncats.bioplanet	National Center for Advancing Translation Sciences BioPlanet	https://tripod.nih.gov/bioplanet/	The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.	^\d+$	3	ruili.huang@nih.gov	https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1				False																					
+"	^M[0-9]{4,}$	M0001		https://morpheus.gitlab.io/models/$1				False										morpheus												
+mp	Mammalian Phenotype Ontology	http://www.informatics.jax.org/searches/MP_form.shtml	The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.	^\d{7}$	0005452	drsbello@gmail.com	http://www.informatics.jax.org/searches/Phat.cgi?id=MP:$1				False	MP		MP	MP						mp	mp	mp	mp	MP		mp						
+mpath	Mouse pathology ontology	http://www.pathbase.net	A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes	^\d+$	728	pns12@hermes.cam.ac.uk	http://purl.obolibrary.org/obo/MPATH_$1		https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo	MPATH	False	MPATH		MPATH	MPATH								mpath	mpath	MPATH		mpath						
+mpid	Microbial Protein Interaction Database	http://www.jcvi.org/mpidb/about.php	The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.	^\d+$	172		http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1			mpidb	False			MPID							mpid	mpid											
+mpio	Minimum PDDI Information Ontology	https://github.com/MPIO-Developers/MPIO	An ontology of minimum information regarding potential drug-drug interaction information.	^\d{7}$	0000004	mbrochhausen@uams.edu	http://purl.obolibrary.org/obo/MPIO_$1				False	MPIO		MPIO	MPIO								mpio	mpio	MPIO								
+mro	MHC Restriction Ontology	https://github.com/IEDB/MRO	The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.	^\d{7}$	0000634	bpeters@lji.org	http://purl.obolibrary.org/obo/MRO_$1				False	MRO		MRO	MRO								mro	mro	MRO								
+ms	Mass spectrometry ontology	http://www.psidev.info/groups/controlled-vocabularies	The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.	^\d{7}$	1000560	gerhard.mayer@rub.de	https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:$1				False	MS		MS	MS						ms	ms	ms	ms	MS								
+msigdb	Molecular Signatures Database	https://www.gsea-msigdb.org	The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can	^M\d+$	M1		https://biopragmatics.github.io/providers/msigdb/$1			msig	False																						
+msio	Metabolomics Standards Initiative Ontology	https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO	an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.	^\d{7}$	0000111						False													msio									
+multicellds	MultiCellDS	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.		MCDS_S_0000000001		http://multicellds.org/MultiCellDB/$1				False																						
+multicellds.cell_line	MultiCellDS Digital Cell Line	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.	^MCDS_L_[a-zA-Z0-9]{1,10}$	MCDS_L_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.CELL_LINE							multicellds.cell_line	multicellds.cell_line									multicellds		
+multicellds.collection	MultiCellDS collection	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).	^MCDS_C_[a-zA-Z0-9]{1,10}$	MCDS_C_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.COLLECTION							multicellds.collection	multicellds.collection									multicellds		
+multicellds.snapshot	MultiCellDS Digital snapshot	http://multicellds.org/MultiCellDB.php	MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.	^MCDS_S_[a-zA-Z0-9]{1,10}$	MCDS_S_0000000001		http://multicellds.org/MultiCellDB/$1				False			MULTICELLDS.SNAPSHOT							multicellds.snapshot	multicellds.snapshot									multicellds		
+mw.project	Metabolomics Workbench Project	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^PR[0-9]{6}$	PR000001		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1				False			MW.PROJECT							mw.project	mw.project											
+mw.study	Metabolomics Workbench Study	http://www.metabolomicsworkbench.org/	Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).	^ST[0-9]{6}$	ST000900		http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1				False			MW.STUDY							mw.study	mw.study											
+myco.lepra	MycoBrowser leprae	http://mycobrowser.epfl.ch/leprosy.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.	^ML\w+$	ML0224		http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1				False			MYCO.LEPRA							myco.lepra	myco.lepra					myco.lepra						
+myco.marinum	MycoBrowser marinum	http://mycobrowser.epfl.ch/marinolist.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.	^MMAR\_\d+$	MMAR_2462		http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1				False			MYCO.MARINUM							myco.marinum	myco.marinum					myco.marinum						
+myco.smeg	MycoBrowser smegmatis	http://mycobrowser.epfl.ch/smegmalist.html	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.	^MSMEG\w+$	MSMEG_3769		http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1				False			MYCO.SMEG							myco.smeg	myco.smeg					myco.smeg						
+myco.tuber	TubercuList knowledge base	http://tuberculist.epfl.ch/	Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.	^Rv\d{4}(A|B|c)?$	Rv1908c		http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1			TubercuList	False			MYCO.TUBER							myco.tuber	myco.tuber					tuberculist		TubercuList				
+mycobank	Fungal Nomenclature and Species Bank	http://www.mycobank.org/	MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.	^\d+$	349124		http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1				False			MYCOBANK							mycobank	mycobank					mycobank	r3d100011222					
+mzspec	Universal Spectrum Identifier	http://proteomecentral.proteomexchange.org/	The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.	^.+$	PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2		http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1				False			MZSPEC							mzspec	mzspec											
+n2t	Name-to-Thing	https://n2t.net	An ARK resolver as well as resolver built with common prefixes as in Identifiers.org		chebi		https://n2t.net/$1:				False																						
+namerxn	NameRXN	https://www.nextmovesoftware.com/namerxn.html	The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).		4.2.78						False																						
+napdi	Natural Product-Drug Interaction Research Data Repository	https://repo.napdi.org/	The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).	^[0-9]+$	28		https://repo.napdi.org/study/$1				False			NAPDI							napdi	napdi											
+napp	Nucleic Acids Phylogenetic Profiling	http://napp.u-psud.fr/	NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.	^\d+$	351		http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1				False			NAPP							napp	napp					napp						
+narcis	National Academic Research and Collaborations Information System	http://www.narcis.nl	NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.	^oai\:cwi\.nl\:\d+$	oai:cwi.nl:4725		http://www.narcis.nl/publication/RecordID/$1				False			NARCIS							narcis	narcis											
+nasc	NASC code	http://arabidopsis.info/	The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.	^(\w+)?\d+$	N1899		http://arabidopsis.info/StockInfo?NASC_id=$1				False			NASC							nasc	nasc					nasc	r3d100010906					
+nbn	National Bibliography Number	http://nbn-resolving.org/resolve_urn.htm	The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland.  They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.	^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$	urn:nbn:fi:tkk-004781		http://nbn-resolving.org/resolver?identifier=$1&verb=redirect				False			NBN							nbn	nbn											
+nbo	Neuro Behavior Ontology	https://github.com/obo-behavior/behavior-ontology/	An ontology of human and animal behaviours and behavioural phenotypes	^\d{7}$	0000564	g.gkoutos@bham.ac.uk	http://purl.obolibrary.org/obo/NBO_$1		https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo		False	NBO		NBO	NBO								nbo	nbo	NBO								
+nbrc	NITE Biological Resource Center	http://www.nbrc.nite.go.jp/e/index.html	NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.	^\d+$	00001234		http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1				False			NBRC							nbrc	nbrc					nbrc						
+ncats.bioplanet	National Center for Advancing Translation Sciences BioPlanet	https://tripod.nih.gov/bioplanet/	The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.	^\d+$	3	ruili.huang@nih.gov	https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1				False																						
 ncats.drug	NCATS Drugs	https://drugs.ncats.io/	"The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:
 
 - US Approved Drugs
 - Marketed Drugs
 - Investigational Drugs
-- Other Substances"		44259		https://drugs.ncats.io/drug/$1			inxight|inxight-drugs	False																					
-ncbi.assembly	Assembly	https://www.ncbi.nlm.nih.gov/	A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.	^[a-zA-Z0-9_\.]+$	GCF_000005845.2		https://www.ncbi.nlm.nih.gov/assembly/$1				False			NCBIAssembly							assembly											
-ncbi.genome	NCBI Genome	https://www.ncbi.nlm.nih.gov/genome	This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.	^\d+$	51		https://www.ncbi.nlm.nih.gov/genome/$1				False			NCBIGenome						2787												
-ncbi.resource	NCBI Registry	https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/	A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources		ECOCYC		https://bioregistry.io/metaregistry/ncbi/$1				False																					
-ncbibook	NCBI Bookshelf	https://www.ncbi.nlm.nih.gov/books	The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. 	^NBK\d+$	NBK331		https://www.ncbi.nlm.nih.gov/books/$1				False																					
-ncbigene	Entrez Gene	https://www.ncbi.nlm.nih.gov/gene	Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.	^\d+$	100010		https://www.ncbi.nlm.nih.gov/gene/$1			EGID|EntrezGene|NCBIGene|entrez|entrez gene/locuslink	False			NCBIGene						1027	ncbigene	ncbigene					ncbigene		P351			
-ncbiprotein	NCBI Protein	https://www.ncbi.nlm.nih.gov/protein	The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.	^(\w+\d+(\.\d+)?)|(NP_\d+)$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1				False			NCBIProtein							ncbiprotein	ncbiprotein					ncbi.protein					
-ncbitaxon	NCBI Taxonomy	https://github.com/obophenotype/ncbitaxon	The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.	^\d+$	2170610	frederic.bastian@unil.ch	https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1		http://purl.obolibrary.org/obo/ncbitaxon.obo	NCBITaxon|NCBI_Taxon_ID|NCBI_taxid|TAX|TaxonomyID|taxid|taxon|taxonomy|uniprot.taxonomy	False	NCBITAXON	NCBITAXON	TAXONOMY	NCBITAXON	NCBI_TaxID				1179	taxonomy	taxonomy	ncbitaxon	ncbitaxon	NCBITaxon		uniprot.taxonomy		P685			
-ncim	NCI Metathesaurus	http://ncim.nci.nih.gov/	NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.	^C\d+$	C0026339		http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1				False			NCIM							ncim	ncim										
-ncit	NCI Thesaurus	https://github.com/NCI-Thesaurus/thesaurus-obo-edition	NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.	^C\d+$	C138986	haendel@ohsu.edu	http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1		http://purl.obolibrary.org/obo/ncit.obo	NCI|NCI2004_11_17|NCIT|NCIT_Thesaurus|NCITm|NCITt|NCI_Thesaurus|NCIt|ncithesaurus	False	NCIT		NCIT	NCIT	NCIt					ncit	ncit	ncit	ncit	NCIT		ncit		P1748			
-ncro	Non-Coding RNA Ontology	http://omnisearch.soc.southalabama.edu/w/index.php/Ontology	An ontology for non-coding RNA, both of biological origin, and engineered.	^\d{7}$	0002927	huang@southalabama.edu	http://purl.obolibrary.org/obo/NCRO_$1	http://purl.obolibrary.org/obo/ncro.owl	https://raw.githubusercontent.com/OmniSearch/ncro/master/src/ontology/ncro.obo		False	NCRO		NCRO	NCRO								ncro	ncro	NCRO							
-ndc	National Drug Code	http://www.accessdata.fda.gov/scripts/cder/ndc/	The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.	^\d+\-\d+\-\d+$	0002-1975-61		http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1				False			NDC							ndc	ndc										
-nddf	National Drug Data File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF	FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.	^\d{6}$	002678						False	NDDF			NDDF																	
-ndex	Network Data Exchange	https://www.ndexbio.org	The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.		aa78a43f-9c4d-11eb-9e72-0ac135e8bacf		https://www.ndexbio.org/viewer/networks/$1				False																					
-ndfrt	National Drug File - Reference Terminology	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT	NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].		N0000001662					NUI|ndf-rt	False	NDFRT			NDFRT										NDF-RT		ndfrt		P2115			
-nemo	Neural ElectroMagnetic Ontology	https://www.nemoarchive.org	This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.	^[a-z]{3}-[a-km-z0-9]{7}$	smp-m3w9hbe		https://assets.nemoarchive.org/$1				False	NEMO			NEMO						nemo											
-neurolex	NIF Standard Ontology: Neurolex	https://github.com/SciCrunch/NIF-Ontology	The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).	^\d+$	4	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_$1			NLX|nlx	False			NEUROLEX							neurolex	neurolex					neurolex			nif		
-neuromorpho	NeuroMorpho	http://neuromorpho.org/index.jsp	NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons.	^\w+$	Rosa2		http://neuromorpho.org/neuron_info.jsp?neuron_name=$1				False			NEUROMORPHO						2657	neuromorpho	neuromorpho					neuromorpho					
-neuronames	NeuroNames	http://braininfo.rprc.washington.edu/	BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.	^\d+$	268		http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1			neuroname	False																		P4394			
-neurondb	NeuronDB	http://senselab.med.yale.edu/NeuronDB/	NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.	^\d+$	265		http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1				False			NEURONDB						2656	neurondb	neurondb					neurondb					
-neurovault.collection	NeuroVault Collection	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.	^[1-9][0-9]*$	3304		https://neurovault.org/collections/$1				False			NEUROVAULT.COLLECTION							neurovault.collection	neurovault.collection										
-neurovault.image	NeuroVault Image	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.	^[1-9][0-9]*$	58788		https://neurovault.org/images/$1				False			NEUROVAULT.IMAGE							neurovault.image	neurovault.image										
-nextdb	Nematode Expression Pattern DataBase	http://nematode.lab.nig.ac.jp/	NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.	^[A-Za-z0-9]+$	6b1		http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1				False			NEXTDB							nextdb	nextdb					nextdb					
-nextprot	nextProt	https://www.nextprot.org/	neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.	^NX_\w+$	NX_O00165		https://www.nextprot.org/db/entry/$1			NXP	False			NEXTPROT							nextprot	nextprot						neXtProt				
+- Other Substances"		44259		https://drugs.ncats.io/drug/$1			inxight|inxight-drugs	False																						
+ncbi.assembly	Assembly	https://www.ncbi.nlm.nih.gov/	A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.	^[a-zA-Z0-9_\.]+$	GCF_000005845.2		https://www.ncbi.nlm.nih.gov/assembly/$1				False			NCBIAssembly							assembly							r3d100012688					
+ncbi.genome	NCBI Genome	https://www.ncbi.nlm.nih.gov/genome	This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.	^\d+$	51		https://www.ncbi.nlm.nih.gov/genome/$1				False			NCBIGenome						2787								r3d100010785					
+ncbi.resource	NCBI Registry	https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/	A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources		ECOCYC		https://bioregistry.io/metaregistry/ncbi/$1				False																						
+ncbibook	NCBI Bookshelf	https://www.ncbi.nlm.nih.gov/books	The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. 	^NBK\d+$	NBK331		https://www.ncbi.nlm.nih.gov/books/$1				False																						
+ncbigene	Entrez Gene	https://www.ncbi.nlm.nih.gov/gene	Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.	^\d+$	100010		https://www.ncbi.nlm.nih.gov/gene/$1			EGID|EntrezGene|NCBIGene|entrez|entrez gene/locuslink	False			NCBIGene						1027	ncbigene	ncbigene					ncbigene	r3d100010650		P351			
+ncbiprotein	NCBI Protein	https://www.ncbi.nlm.nih.gov/protein	The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.	^(\w+\d+(\.\d+)?)|(NP_\d+)$	CAA71118.1		https://www.ncbi.nlm.nih.gov/protein/$1				False			NCBIProtein							ncbiprotein	ncbiprotein					ncbi.protein	r3d100010776					
+ncbitaxon	NCBI Taxonomy	https://github.com/obophenotype/ncbitaxon	The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.	^\d+$	2170610	frederic.bastian@unil.ch	https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1		http://purl.obolibrary.org/obo/ncbitaxon.obo	NCBI Taxonomy|NCBITaxon|NCBI_Taxon_ID|NCBI_taxid|TAX|TaxonomyID|taxid|taxon|taxonomy|uniprot.taxonomy	False	NCBITAXON	NCBITAXON	TAXONOMY	NCBITAXON	NCBI_TaxID				1179	taxonomy	taxonomy	ncbitaxon	ncbitaxon	NCBITaxon		uniprot.taxonomy	r3d100010415		P685			
+ncim	NCI Metathesaurus	http://ncim.nci.nih.gov/	NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.	^C\d+$	C0026339		http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1				False			NCIM							ncim	ncim											
+ncit	NCI Thesaurus	https://github.com/NCI-Thesaurus/thesaurus-obo-edition	NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.	^C\d+$	C138986	haendel@ohsu.edu	http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1		http://purl.obolibrary.org/obo/ncit.obo	NCI|NCI2004_11_17|NCIT|NCIT_Thesaurus|NCITm|NCITt|NCI_Thesaurus|NCIt|ncithesaurus	False	NCIT		NCIT	NCIT	NCIt					ncit	ncit	ncit	ncit	NCIT		ncit			P1748			
+ncro	Non-Coding RNA Ontology	http://omnisearch.soc.southalabama.edu/w/index.php/Ontology	An ontology for non-coding RNA, both of biological origin, and engineered.	^\d{7}$	0002927	huang@southalabama.edu	http://purl.obolibrary.org/obo/NCRO_$1	http://purl.obolibrary.org/obo/ncro.owl	https://raw.githubusercontent.com/OmniSearch/ncro/master/src/ontology/ncro.obo		False	NCRO		NCRO	NCRO								ncro	ncro	NCRO								
+ndc	National Drug Code	http://www.accessdata.fda.gov/scripts/cder/ndc/	The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.	^\d+\-\d+\-\d+$	0002-1975-61		http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1				False			NDC							ndc	ndc											
+nddf	National Drug Data File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF	FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.	^\d{6}$	002678						False	NDDF			NDDF																		
+ndex	Network Data Exchange	https://www.ndexbio.org	The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.		aa78a43f-9c4d-11eb-9e72-0ac135e8bacf		https://www.ndexbio.org/viewer/networks/$1				False																						
+ndfrt	National Drug File - Reference Terminology	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT	NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].		N0000001662					NUI|ndf-rt	False	NDFRT			NDFRT										NDF-RT		ndfrt			P2115			
+nemo	Neural ElectroMagnetic Ontology	https://www.nemoarchive.org	This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.	^[a-z]{3}-[a-km-z0-9]{7}$	smp-m3w9hbe		https://assets.nemoarchive.org/$1				False	NEMO			NEMO						nemo												
+neurolex	NIF Standard Ontology: Neurolex	https://github.com/SciCrunch/NIF-Ontology	The NeuroLex project is a dynamic lexicon of terms used in neuroscience.  It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).	^\d+$	4	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_$1			NLX|nlx	False			NEUROLEX							neurolex	neurolex					neurolex				nif		
+neuromorpho	NeuroMorpho	http://neuromorpho.org/index.jsp	NeuroMorpho.Org is a centrally curated inventory of  digitally reconstructed neurons.	^\w+$	Rosa2		http://neuromorpho.org/neuron_info.jsp?neuron_name=$1				False			NEUROMORPHO						2657	neuromorpho	neuromorpho					neuromorpho						
+neuronames	NeuroNames	http://braininfo.rprc.washington.edu/	BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.	^\d+$	268		http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1			neuroname	False																			P4394			
+neurondb	NeuronDB	http://senselab.med.yale.edu/NeuronDB/	NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.	^\d+$	265		http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1				False			NEURONDB						2656	neurondb	neurondb					neurondb						
+neurovault.collection	NeuroVault Collection	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.	^[1-9][0-9]*$	3304		https://neurovault.org/collections/$1				False			NEUROVAULT.COLLECTION							neurovault.collection	neurovault.collection											
+neurovault.image	NeuroVault Image	http://neurovault.org	Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.	^[1-9][0-9]*$	58788		https://neurovault.org/images/$1				False			NEUROVAULT.IMAGE							neurovault.image	neurovault.image											
+nextdb	Nematode Expression Pattern DataBase	http://nematode.lab.nig.ac.jp/	NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.	^[A-Za-z0-9]+$	6b1		http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1				False			NEXTDB							nextdb	nextdb					nextdb						
+nextprot	nextProt	https://www.nextprot.org/	neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.	^NX_\w+$	NX_O00165		https://www.nextprot.org/db/entry/$1			NXP	False			NEXTPROT							nextprot	nextprot							neXtProt				
 nextprot.family	neXtProt family	https://www.nextprot.org/	"NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. 
-(Developed by the SIB Swiss Institute of Bioinformatics)"	^\d+$	01406		https://www.nextprot.org/term/FA-$1			NXPFA	False																					
-ngl	NASA GeneLab	https://genelab-data.ndc.nasa.gov/genelab/	NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.	^GLDS-\d+$	GLDS-141		https://genelab-data.ndc.nasa.gov/genelab/accession/$1				False			NGL							ngl	ngl										
-nhcdr	NINDS Human Cell and Data Repository	https://stemcells.nindsgenetics.org	Cell line collections		ND50028		https://stemcells.nindsgenetics.org?line=$1				False					NHCDR																
-niaest	NIA Mouse cDNA Project	http://lgsun.grc.nia.nih.gov/cDNA/	A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.	^\w\d{4}\w\d{2}(\-[35])?$	J0705A10		http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1				False			NIAEST							niaest	niaest					niaest					
-nif.cell	NIF Cell	http://neuinfo.org/	Neuronal cell types			smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_CELL_$1				True	NIFCELL		NIF_CELL	NIFCELL								nif_cell							nif		
-nif.dysfunction	NIF Dysfunction	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1				True			NIF_DYSFUNCTION									nif_dysfunction							nif		
-nif.ext	NIF Standard Ontology: External	https://github.com/SciCrunch/NIF-Ontology	"NIFEXT covers IRIs that were ""external"" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."	^\d+$	7123	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nifext_$1			NIFEXT	False																			nif		
-nif.grossanatomy	NIF Gross Anatomy	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1				True			NIF_GROSSANATOMY									nif_grossanatomy							nif		
-nif.std	NIF Standard Ontology	https://github.com/SciCrunch/NIF-Ontology	NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.	^BAMSC\d+$	BAMSC981	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/$1			NIFSTD	False	NIFSTD			NIFSTD															nif		
-nihreporter.project	NIH RePORTER	https://reporter.nih.gov/	RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.	^\d+$	10343835		https://reporter.nih.gov/project-details/$1				False																					
-nist	NIST Chemistry WebBook	https://webbook.nist.gov/chemistry/	The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.							NIST|NIST Chemistry WebBook	False																					
-nlm	National Library of Medicine Catalog	https://www.ncbi.nlm.nih.gov/nlmcatalog	Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings.	^\d+$	101775319		https://www.ncbi.nlm.nih.gov/nlmcatalog/$1				False																					
-nlx.anat	NeuroLex Anatomy	https://scicrunch.org/scicrunch/interlex/dashboard	NLXANAT covers anatomy terms. Almost all terms are also in Uberon.	^\d+$	090201	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1				False																			nif		
-nlx.br	NIF Standard Ontology: Brain Regions	https://github.com/SciCrunch/NIF-Ontology	NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).	^\d+$	145	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_br_$1			NLXBR	False																			nif		
-nlx.cell	NIF Standard Ontology: Cell Types	https://github.com/SciCrunch/NIF-Ontology	NLXCELL conatins cell types with a focus on neuron types.	^\d+$	91005	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1			NLXCELL	False																			nif		
-nlx.chem	NIF Standard Ontology: Chemical	https://github.com/SciCrunch/NIF-Ontology	NLXCHEM covers chemicals. Most classes are also in ChEBI.	^\d+$	90801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1			NLXCHEM	False																			nif		
-nlx.dys	NeuroLex Dysfunction	https://scicrunch.org/scicrunch/interlex/dashboard	NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.	^\d+$	20090303	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1				False																			nif		
-nlx.func	NIF Standard Ontology: Cognitive Function	https://github.com/SciCrunch/NIF-Ontology	NLXFUNC covers terms for cognitive function.	^\d+$	90801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_func_$1			NLXFUNC	False																			nif		
-nlx.inv	NIF Standard Ontology: Investigations	https://github.com/SciCrunch/NIF-Ontology	NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.	^\d+$	90901	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1			NLXINV	False																			nif		
-nlx.mol	NIF Standard Ontology: Molecules	https://github.com/SciCrunch/NIF-Ontology	NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.	^\d+$	90806	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1			NLXMOL	False																			nif		
-nlx.oen	NIF Standard Ontology: OEN Terms in Neurolex	https://github.com/SciCrunch/NIF-Ontology	NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).	^\d+$	0001000	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/oen_$1			NLXOEN	False																			nif		
-nlx.org	NIF Standard Ontology: Organisms	https://github.com/SciCrunch/NIF-Ontology	NLXORG covers organisms.	^\d+$	090701	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1			NLXORG	False																			nif		
-nlx.qual	NIF Standard Ontology: Qualities	https://github.com/SciCrunch/NIF-Ontology	NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).	^\d+$	100810	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1			NLXQUAL	False																			nif		
-nlx.res	NIF Standard Ontology: Digital Resources	https://github.com/SciCrunch/NIF-Ontology	NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites	^\d+$	090924	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_res_$1			NLXRES	False																			nif		
-nlx.sub	NIF Standard Ontology: Subcellular Entities	https://github.com/SciCrunch/NIF-Ontology	NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).	^\d+$	090803	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1			NLXSUB|nif_subcellular	False																			nif		
-nmdc	National Microbiome Data Collaborative	https://microbiomedata.org/	An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.	^[\w\-.]{3,}$	y3ax-8bq3-60	donny@polyneme.xyz	https://drs.microbiomedata.org/objects/$1				False										nmdc											
-nmr	NMR-instrument specific component of metabolomics investigations	http://msi-ontology.sourceforge.net/	nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.	^\d+$	1000003	schober@imbi.uni-freiburg.de	https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1	https://nmrml.org/cv/stable/nmrCV.owl		nmrcv	True	NMR		NMR	NMR						nmr	nmr	nmr	nmrcv			nmr					
-nmrshiftdb2	NMR Shift Database	https://nmrshiftdb.nmr.uni-koeln.de	NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.	^[0-9]+$	234		https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1				False										nmrshiftdb2											
-noaa	NOAA Fisheries Species Directory	https://www.fisheries.noaa.gov/species-directory	Identifier for a species on the noaa fisheries website	^[a-z]+(\-[a-z]+)*$	long-finned-pilot-whale		https://www.fisheries.noaa.gov/species/$1				False																		P6049			
-nomen	A nomenclatural ontology for biological names	https://github.com/SpeciesFileGroup/nomen	NOMEN is a nomenclatural ontology for biological names (not concepts).  It encodes the goverened rules of nomenclature.	^\d{7}$	0000295	diapriid@gmail.com	http://purl.obolibrary.org/obo/NOMEN_$1				False	NOMEN			NOMEN								nomen	nomen	NOMEN							
-noncodev3	NONCODE v3	http://www.noncode.org/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.	^\d+$	377550		http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1				False			NONCODEV3							noncodev3	noncodev3										
-noncodev4.gene	NONCODE v4 Gene	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.	^NONHSAG\d{5}$	NONHSAG00001		http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1				False			NONCODEV4.GENE							noncodev4.gene	noncodev4.gene										
-noncodev4.rna	NONCODE v4 Transcript	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.	^NONHSAT\d{6}$	NONHSAT000001		http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1				False			NONCODEV4.RNA							noncodev4.rna	noncodev4.rna										
-norine	Nonribosomal Peptides Database	http://bioinfo.lifl.fr/norine/	Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.	^NOR\d+$	NOR00681		http://bioinfo.lifl.fr/norine/result.jsp?ID=$1				False			NORINE							norine	norine					norine					
-novus	Novus Biologicals	https://www.novusbio.com	A vendor of antibodies and other biologics		nb100-56351		https://www.novusbio.com/products/$1				False																					
+(Developed by the SIB Swiss Institute of Bioinformatics)"	^\d+$	01406		https://www.nextprot.org/term/FA-$1			NXPFA	False																						
+ngl	NASA GeneLab	https://genelab-data.ndc.nasa.gov/genelab/	NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.	^GLDS-\d+$	GLDS-141		https://genelab-data.ndc.nasa.gov/genelab/accession/$1				False			NGL							ngl	ngl											
+nhcdr	NINDS Human Cell and Data Repository	https://stemcells.nindsgenetics.org	Cell line collections		ND50028		https://stemcells.nindsgenetics.org?line=$1				False					NHCDR																	
+niaest	NIA Mouse cDNA Project	http://lgsun.grc.nia.nih.gov/cDNA/	A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.	^\w\d{4}\w\d{2}(\-[35])?$	J0705A10		http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1				False			NIAEST							niaest	niaest					niaest						
+nif.cell	NIF Cell	http://neuinfo.org/	Neuronal cell types			smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_CELL_$1				True	NIFCELL		NIF_CELL	NIFCELL								nif_cell								nif		
+nif.dysfunction	NIF Dysfunction	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1				True			NIF_DYSFUNCTION									nif_dysfunction								nif		
+nif.ext	NIF Standard Ontology: External	https://github.com/SciCrunch/NIF-Ontology	"NIFEXT covers IRIs that were ""external"" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."	^\d+$	7123	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nifext_$1			NIFEXT	False																				nif		
+nif.grossanatomy	NIF Gross Anatomy	http://neuinfo.org/				smtifahim@gmail.com	http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1				True			NIF_GROSSANATOMY									nif_grossanatomy								nif		
+nif.std	NIF Standard Ontology	https://github.com/SciCrunch/NIF-Ontology	NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.	^BAMSC\d+$	BAMSC981	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/$1			NIFSTD	False	NIFSTD			NIFSTD																nif		
+nihreporter.project	NIH RePORTER	https://reporter.nih.gov/	RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.	^\d+$	10343835		https://reporter.nih.gov/project-details/$1				False																						
+nist	NIST Chemistry WebBook	https://webbook.nist.gov/chemistry/	The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.							NIST|NIST Chemistry WebBook	False																						
+nlm	National Library of Medicine Catalog	https://www.ncbi.nlm.nih.gov/nlmcatalog	Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings.	^\d+$	101775319		https://www.ncbi.nlm.nih.gov/nlmcatalog/$1				False																						
+nlx.anat	NeuroLex Anatomy	https://scicrunch.org/scicrunch/interlex/dashboard	NLXANAT covers anatomy terms. Almost all terms are also in Uberon.	^\d+$	090201	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1				False																				nif		
+nlx.br	NIF Standard Ontology: Brain Regions	https://github.com/SciCrunch/NIF-Ontology	NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).	^\d+$	145	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_br_$1			NLXBR	False																				nif		
+nlx.cell	NIF Standard Ontology: Cell Types	https://github.com/SciCrunch/NIF-Ontology	NLXCELL conatins cell types with a focus on neuron types.	^\d+$	91005	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1			NLXCELL	False																				nif		
+nlx.chem	NIF Standard Ontology: Chemical	https://github.com/SciCrunch/NIF-Ontology	NLXCHEM covers chemicals. Most classes are also in ChEBI.	^\d+$	90801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1			NLXCHEM	False																				nif		
+nlx.dys	NeuroLex Dysfunction	https://scicrunch.org/scicrunch/interlex/dashboard	NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.	^\d+$	20090303	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1				False																				nif		
+nlx.func	NIF Standard Ontology: Cognitive Function	https://github.com/SciCrunch/NIF-Ontology	NLXFUNC covers terms for cognitive function.	^\d+$	90801	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_func_$1			NLXFUNC	False																				nif		
+nlx.inv	NIF Standard Ontology: Investigations	https://github.com/SciCrunch/NIF-Ontology	NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.	^\d+$	90901	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1			NLXINV	False																				nif		
+nlx.mol	NIF Standard Ontology: Molecules	https://github.com/SciCrunch/NIF-Ontology	NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.	^\d+$	90806	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1			NLXMOL	False																				nif		
+nlx.oen	NIF Standard Ontology: OEN Terms in Neurolex	https://github.com/SciCrunch/NIF-Ontology	NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).	^\d+$	0001000	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/oen_$1			NLXOEN	False																				nif		
+nlx.org	NIF Standard Ontology: Organisms	https://github.com/SciCrunch/NIF-Ontology	NLXORG covers organisms.	^\d+$	090701	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1			NLXORG	False																				nif		
+nlx.qual	NIF Standard Ontology: Qualities	https://github.com/SciCrunch/NIF-Ontology	NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).	^\d+$	100810	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1			NLXQUAL	False																				nif		
+nlx.res	NIF Standard Ontology: Digital Resources	https://github.com/SciCrunch/NIF-Ontology	NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites	^\d+$	090924	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_res_$1			NLXRES	False																				nif		
+nlx.sub	NIF Standard Ontology: Subcellular Entities	https://github.com/SciCrunch/NIF-Ontology	NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).	^\d+$	090803	tgbugs@gmail.com	http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1			NLXSUB|nif_subcellular	False																				nif		
+nmdc	National Microbiome Data Collaborative	https://microbiomedata.org/	An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.	^[\w\-.]{3,}$	y3ax-8bq3-60	donny@polyneme.xyz	https://drs.microbiomedata.org/objects/$1				False										nmdc												
+nmr	NMR-instrument specific component of metabolomics investigations	http://msi-ontology.sourceforge.net/	nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.	^\d+$	1000003	schober@imbi.uni-freiburg.de	https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1	https://nmrml.org/cv/stable/nmrCV.owl		nmrcv	True	NMR		NMR	NMR						nmr	nmr	nmr	nmrcv			nmr						
+nmrshiftdb2	NMR Shift Database	https://nmrshiftdb.nmr.uni-koeln.de	NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.	^[0-9]+$	234		https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1				False										nmrshiftdb2												
+noaa	NOAA Fisheries Species Directory	https://www.fisheries.noaa.gov/species-directory	Identifier for a species on the noaa fisheries website	^[a-z]+(\-[a-z]+)*$	long-finned-pilot-whale		https://www.fisheries.noaa.gov/species/$1				False																			P6049			
+nomen	A nomenclatural ontology for biological names	https://github.com/SpeciesFileGroup/nomen	NOMEN is a nomenclatural ontology for biological names (not concepts).  It encodes the goverened rules of nomenclature.	^\d{7}$	0000295	diapriid@gmail.com	http://purl.obolibrary.org/obo/NOMEN_$1				False	NOMEN			NOMEN								nomen	nomen	NOMEN								
+noncodev3	NONCODE v3	http://www.noncode.org/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.	^\d+$	377550		http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1				False			NONCODEV3							noncodev3	noncodev3											
+noncodev4.gene	NONCODE v4 Gene	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.	^NONHSAG\d{5}$	NONHSAG00001		http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1				False			NONCODEV4.GENE							noncodev4.gene	noncodev4.gene											
+noncodev4.rna	NONCODE v4 Transcript	http://www.bioinfo.org/NONCODEv4/	NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.	^NONHSAT\d{6}$	NONHSAT000001		http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1				False			NONCODEV4.RNA							noncodev4.rna	noncodev4.rna											
+norine	Nonribosomal Peptides Database	http://bioinfo.lifl.fr/norine/	Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.	^NOR\d+$	NOR00681		http://bioinfo.lifl.fr/norine/result.jsp?ID=$1				False			NORINE							norine	norine					norine						
+novus	Novus Biologicals	https://www.novusbio.com	A vendor of antibodies and other biologics		nb100-56351		https://www.novusbio.com/products/$1				False																						
 npass	Natural Product Activity and Species Source Database	http://bidd.group/NPASS/	"Database for integrating species source of natural products & connecting natural products to biological targets via  experimental-derived quantitative activity data.
-"	^NPC\d+$	NPC139585						False																					
-npo	NanoParticle Ontology	https://bioportal.bioontology.org/ontologies/NPO	An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.	^\d+$	1731	nathan.baker@pnl.gov					False	NPO			NPO																	
-nuclearbd	NucleaRDB	http://www.receptors.org/nucleardb/	NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.	^\w+\_\w+$	prgr_human		http://www.receptors.org/nucleardb/proteins/$1				False			NUCLEARBD							nuclearbd	nuclearbd										
-nucleotide	Nucleotide	https://www.ncbi.nlm.nih.gov/	The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.	^[a-zA-Z0-9_\.]+$	880798137		https://www.ncbi.nlm.nih.gov/nuccore/$1				False										nucleotide											insdc
-oa	Web Annotation Ontology	http://www.w3.org/ns/oa	The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.		sourceDateStart		http://www.w3.org/ns/oa#$1				False	OA		oa	OA																	
-oae	Ontology of Adverse Events	https://github.com/OAE-ontology/OAE/	The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning.  OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.	^\d{7}$	0002959	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OAE_$1				False	OAE		OAE	OAE								oae	oae	OAE							
-oarcs	Ontology of Arthropod Circulatory Systems	https://github.com/aszool/oarcs	OArCS is an ontology describing the Arthropod ciruclatory system.	^\d{7}$	0000029	mjyoder@illinois.edu	http://purl.obolibrary.org/obo/OARCS_$1				False	OARCS		OARCS	OARCS								oarcs	oarcs	OARCS							
-oba	Ontology of Biological Attributes	https://github.com/obophenotype/bio-attribute-ontology	A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.	^\d{7}$	0000001	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OBA_$1				False	OBA		OBA	OBA								oba	oba	OBA							
-obcs	Ontology of Biological and Clinical Statistics	https://github.com/obcs/obcs	OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.  	^\d{7}$	0000121	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OBCS_$1				False	OBCS		OBCS	OBCS								obcs	obcs	OBCS							
-obi	Ontology for Biomedical Investigations	http://obi-ontology.org	The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).	^\d{7}$	0400109	bpeters@lji.org	http://purl.obolibrary.org/obo/OBI_$1		https://github.com/obi-ontology/obi/raw/master/views/obi.obo		False	OBI		OBI	OBI						obi	obi	obi	obi	OBI		obi					
-obib	Ontology for Biobanking	https://github.com/biobanking/biobanking	The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.	^\d{7}$	0000389	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OBIB_$1				False	OBIB		OBIB	OBIB								obib	obib	OBIB							
-obo	Internal OBO and PyOBO Relations	http://www.obofoundry.org/	Community development of interoperable ontologies for the biological sciences				http://purl.obolibrary.org/obo/$1				False			OBO																		
-oboinowl	OBO in OWL	https://github.com/geneontology/go-ontology/tree/master/contrib	This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties		hasDbXref		http://www.geneontology.org/formats/oboInOwl#$1		https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo	oboformat|oio	False			oboInOwl																		
-occ	OpenCitations Corpus	https://w3id.org/oc/corpus	The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.	^[a-z][a-z]/[0-9]+$	br/1		https://w3id.org/oc/corpus/$1				False										occ	occ										
+"	^NPC\d+$	NPC139585						False																						
+npo	NanoParticle Ontology	https://bioportal.bioontology.org/ontologies/NPO	An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.	^\d+$	1731	nathan.baker@pnl.gov					False	NPO			NPO																		
+nuclearbd	NucleaRDB	http://www.receptors.org/nucleardb/	NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.	^\w+\_\w+$	prgr_human		http://www.receptors.org/nucleardb/proteins/$1				False			NUCLEARBD							nuclearbd	nuclearbd											
+nucleotide	Nucleotide	https://www.ncbi.nlm.nih.gov/	The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.	^[a-zA-Z0-9_\.]+$	880798137		https://www.ncbi.nlm.nih.gov/nuccore/$1				False										nucleotide												insdc
+oa	Web Annotation Ontology	http://www.w3.org/ns/oa	The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.		sourceDateStart		http://www.w3.org/ns/oa#$1				False	OA		oa	OA																		
+oae	Ontology of Adverse Events	https://github.com/OAE-ontology/OAE/	The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning.  OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.	^\d{7}$	0002959	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OAE_$1				False	OAE		OAE	OAE								oae	oae	OAE								
+oarcs	Ontology of Arthropod Circulatory Systems	https://github.com/aszool/oarcs	OArCS is an ontology describing the Arthropod ciruclatory system.	^\d{7}$	0000029	mjyoder@illinois.edu	http://purl.obolibrary.org/obo/OARCS_$1				False	OARCS		OARCS	OARCS								oarcs	oarcs	OARCS								
+oba	Ontology of Biological Attributes	https://github.com/obophenotype/bio-attribute-ontology	A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.	^\d{7}$	0000001	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OBA_$1				False	OBA		OBA	OBA								oba	oba	OBA								
+obcs	Ontology of Biological and Clinical Statistics	https://github.com/obcs/obcs	OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.  	^\d{7}$	0000121	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OBCS_$1				False	OBCS		OBCS	OBCS								obcs	obcs	OBCS								
+obi	Ontology for Biomedical Investigations	http://obi-ontology.org	The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).	^\d{7}$	0400109	bpeters@lji.org	http://purl.obolibrary.org/obo/OBI_$1		https://github.com/obi-ontology/obi/raw/master/views/obi.obo		False	OBI		OBI	OBI						obi	obi	obi	obi	OBI		obi						
+obib	Ontology for Biobanking	https://github.com/biobanking/biobanking	The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.	^\d{7}$	0000389	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OBIB_$1				False	OBIB		OBIB	OBIB								obib	obib	OBIB								
+obo	Internal OBO and PyOBO Relations	http://www.obofoundry.org/	Community development of interoperable ontologies for the biological sciences				http://purl.obolibrary.org/obo/$1				False			OBO																			
+oboinowl	OBO in OWL	https://github.com/geneontology/go-ontology/tree/master/contrib	This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties		hasDbXref		http://www.geneontology.org/formats/oboInOwl#$1		https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo	oboformat|oio	False			oboInOwl																			
+occ	OpenCitations Corpus	https://w3id.org/oc/corpus	The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.	^[a-z][a-z]/[0-9]+$	br/1		https://w3id.org/oc/corpus/$1				False										occ	occ											
 oci	Open Citation Identifier	http://opencitations.net	"Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.
 
 OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.
 
 OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310–01022252312.
 
-OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings."	^[0-9]+-[0-9]+$	1-18		https://w3id.org/oc/oci/$1				False			OCI							oci	oci										
-ocid	Ontology Concept Identifiers	https://ontochem.com/	"'ocid' stands for ""Ontology Concept Identifiers"" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology."	^[0-9]{12}$	190000021540		https://ocid.ontochem.com/prefname?ocid=$1				False										ocid											
-oclc	Online Computer Library Center WorldCat	https://www.oclc.org/en/about.html	The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.	^[0-9]+$	634515043		https://www.worldcat.org/oclc/$1				False			OCLC							oclc	oclc										
-odam	Open Data for Access and Mining	https://metabolome.cgfb.u-bordeaux.fr/	Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.	^[A-Za-z0-9]+$	frim1		http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1				False										odam											
-odc.sci	Open Data Commons for Spinal Cord Injury	https://odc-sci.org	The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.	^[0-9]*$	602		https://odc-sci.org/data/$1				False										odc.sci											
-odc.tbi	Open Data Commons for Traumatic Brain Injury	https://odc-tbi.org	The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.	^[0-9]*$	408		https://odc-tbi.org/data/$1				False										odc.tbi											
-odor	Odor Molecules DataBase	http://senselab.med.yale.edu/OdorDB	OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors	^\d+$	74		http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5				False			ODOR							odor	odor										
-ogg	The Ontology of Genes and Genomes	https://bitbucket.org/hegroup/ogg	OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. 	^\d+$	3000887619	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OGG_$1				False	OGG		OGG	OGG								ogg	ogg	OGG							
+OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings."	^[0-9]+-[0-9]+$	1-18		https://w3id.org/oc/oci/$1				False			OCI							oci	oci											
+ocid	Ontology Concept Identifiers	https://ontochem.com/	"'ocid' stands for ""Ontology Concept Identifiers"" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology."	^[0-9]{12}$	190000021540		https://ocid.ontochem.com/prefname?ocid=$1				False										ocid												
+oclc	Online Computer Library Center WorldCat	https://www.oclc.org/en/about.html	The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.	^[0-9]+$	634515043		https://www.worldcat.org/oclc/$1				False			OCLC							oclc	oclc											
+odam	Open Data for Access and Mining	https://metabolome.cgfb.u-bordeaux.fr/	Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.	^[A-Za-z0-9]+$	frim1		http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1				False										odam												
+odc.sci	Open Data Commons for Spinal Cord Injury	https://odc-sci.org	The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.	^[0-9]*$	602		https://odc-sci.org/data/$1				False										odc.sci												
+odc.tbi	Open Data Commons for Traumatic Brain Injury	https://odc-tbi.org	The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.	^[0-9]*$	408		https://odc-tbi.org/data/$1				False										odc.tbi												
+odor	Odor Molecules DataBase	http://senselab.med.yale.edu/OdorDB	OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors	^\d+$	74		http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5				False			ODOR							odor	odor											
+ogg	The Ontology of Genes and Genomes	https://bitbucket.org/hegroup/ogg	OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. 	^\d+$	3000887619	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OGG_$1				False	OGG		OGG	OGG								ogg	ogg	OGG								
 ogi	Ontology for genetic interval	https://code.google.com/archive/p/ontology-for-genetic-interval/	"OGI formalized the genomic element by defining an upper class 'genetic interval'.
 
 The definition of 'genetic interval' is ""the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture."" 
@@ -1024,490 +1024,490 @@ Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval
 Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)
 
 
-"	^\d{7}$	0000019	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGI_$1			OGI.owl	True	OGI		OGI	OGI								ogi	ogi	OGI							
+"	^\d{7}$	0000019	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGI_$1			OGI.owl	True	OGI		OGI	OGI								ogi	ogi	OGI								
 ogms	Ontology for General Medical Science	https://github.com/OGMS/ogms	"The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.
 
-OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."	^\d{7}$	0000031	baeverma@jcvi.org	http://purl.obolibrary.org/obo/OGMS_$1			ogms/OMRE	False	OGMS		OGMS	OGMS								ogms	ogms	OGMS							
-ogsf	Ontology of Genetic Susceptibility Factor	https://github.com/linikujp/OGSF	An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.	^\d{7}$	0000025	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGSF_$1				False	OGSF		OGSF	OGSF								ogsf	ogsf	OGSF							
-ohd	Oral Health and Disease Ontology	https://purl.obolibrary.org/obo/ohd/home	The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records.	^\d{7}$	0000006	wdduncan@gmail.com	http://purl.obolibrary.org/obo/OHD_$1				False	OHD		OHD	OHD								ohd	ohd	OHD							
-ohmi	Ontology of Host-Microbiome Interactions	https://github.com/ohmi-ontology/ohmi	OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.	^\d{7}$	0000460	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OHMI_$1				False	OHMI		OHMI	OHMI								ohmi	ohmi	OHMI							
-ohpi	Ontology of Host Pathogen Interactions	https://github.com/OHPI/ohpi	OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).	^\d+$	9001411	edong@umich.edu	http://purl.obolibrary.org/obo/OHPI_$1				False	OHPI			OHPI								ohpi	ohpi	OHPI							
-oid	OID Repository	http://www.oid-info.com/introduction.htm	OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.	^[\d.]+$	2.16.840		http://www.oid-info.com/cgi-bin/display?oid=$1&submit=Display&action=display				False										oid	oid										
-olatdv	Medaka Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv	Life cycle stages for Medaka	^\d{7}$	0000210	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/OLATDV_$1				False	OLATDV		OLATDV	OLATDV								olatdv	olatdv	OLATDV							
-om	Ontology of units of Measure	https://github.com/HajoRijgersberg/OM	The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife.  OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM:  Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging		Dimension	hajo.rijgersberg@wur.nl	http://www.ontology-of-units-of-measure.org/resource/om-2/$1				False	OM	OM		OM									om								
-oma.grp	OMA Group	https://omabrowser.org/cgi-bin/gateway.pl	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.	^[A-Z]+$	LCSCCPN		https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1				False			OMA.GRP							oma.grp	oma.grp										
-oma.hog	OMA HOGs	https://omabrowser.org	Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. 	^[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$	0459895		https://omabrowser.org/oma/hog/HOG:$1				False										oma.hog											
-oma.protein	OMA Protein	https://omabrowser.org/cgi-bin/gateway.pl	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.	^[A-Z0-9]{5}\d+$	HUMAN16963		https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1				False			OMA.PROTEIN							oma.protein	oma.protein										
-omia	Online Mendelian Inheritance in Animals	http://omia.angis.org.au/	Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).	^\d+$	1000		http://omia.angis.org.au/$1/				True			OMIA							omia	omia					omia					
-omiabis	Ontologized MIABIS	https://github.com/OMIABIS/omiabis-dev	An ontological version of MIABIS (Minimum Information About BIobank data Sharing)	^\d{7}$	0001079	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OMIABIS_$1				True	OMIABIS		OMIABIS	OMIABIS								omiabis	omiabis	OMIABIS							
-omim	Online Mendelian Inheritance in Man	https://omim.org/	Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.	^\d+$	603903	ahamosh@jhmi.edu	https://omim.org/entry/$1			OMIM|mim	False	OMIM		OMIM	OMIM					1153	mim	mim					omim	MIM	P492			
-omim.ps	OMIM Phenotypic Series	https://www.omim.org/phenotypicSeriesTitles/all	A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.	^PS\d+$	PS214100	ahamosh@jhmi.edu	https://omim.org/phenotypicSeries/$1			MIMPS|OMIMPS|PS|mim.ps	False																			omim		
-omit	Ontology for MicroRNA Target	http://omit.cis.usouthal.edu/	The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).	^\d{7}$	0000069	huang@southalabama.edu	https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$1		https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo	OMIT	False	OMIT		OMIT	OMIT						omit	omit	omit	omit	OMIT							
-omo	OBO Metadata Ontology	https://github.com/information-artifact-ontology/ontology-metadata	An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).			cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OMO_$1				False	OMO			OMO								omo	omo	OMO							
-omop	Observational Medical Outcomes Partnership	https://www.ohdsi.org/data-standardization/the-common-data-model/	The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format.								False																					
-omp	Ontology of Microbial Phenotypes	http://microbialphenotypes.org	An ontology of phenotypes covering microbes	^\d{7}$	0005067	jimhu@tamu.edu	http://purl.obolibrary.org/obo/OMP_$1				False	OMP		OMP	OMP								omp	omp	OMP							
-omrse	Ontology of Medically Related Social Entities	https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview	This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations.	^\d{8}$	00000022	hoganwr@gmail.com	http://purl.obolibrary.org/obo/OMRSE_$1		https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo		False	OMRSE		OMRSE	OMRSE								omrse	omrse	OMRSE							
-oncotree	OncoTree	http://oncotree.mskcc.org	OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research.		BLL		http://oncotree.mskcc.org/api/tumorTypes/search/code/$1				False																					
-one	Ontology for Nutritional Epidemiology	https://github.com/cyang0128/Nutritional-epidemiologic-ontologies	An ontology to standardize research output of nutritional epidemiologic studies.	^\d{7}$	0001021	chenyangnutrition@gmail.com	http://purl.obolibrary.org/obo/ONE_$1				False	ONE			ONE								one	one	ONE							
-ons	Ontology for Nutritional Studies	https://github.com/enpadasi/Ontology-for-Nutritional-Studies	The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies.	^\d{7}$	0000060	francesco.vitali@ibba.cnr.it	http://purl.obolibrary.org/obo/ONS_$1				False	ONS			ONS								ons	ons	ONS							
+OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."	^\d{7}$	0000031	baeverma@jcvi.org	http://purl.obolibrary.org/obo/OGMS_$1			ogms/OMRE	False	OGMS		OGMS	OGMS								ogms	ogms	OGMS								
+ogsf	Ontology of Genetic Susceptibility Factor	https://github.com/linikujp/OGSF	An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.	^\d{7}$	0000025	linikujp@gmail.com	http://purl.obolibrary.org/obo/OGSF_$1				False	OGSF		OGSF	OGSF								ogsf	ogsf	OGSF								
+ohd	Oral Health and Disease Ontology	https://purl.obolibrary.org/obo/ohd/home	The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records.	^\d{7}$	0000006	wdduncan@gmail.com	http://purl.obolibrary.org/obo/OHD_$1				False	OHD		OHD	OHD								ohd	ohd	OHD								
+ohmi	Ontology of Host-Microbiome Interactions	https://github.com/ohmi-ontology/ohmi	OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.	^\d{7}$	0000460	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OHMI_$1				False	OHMI		OHMI	OHMI								ohmi	ohmi	OHMI								
+ohpi	Ontology of Host Pathogen Interactions	https://github.com/OHPI/ohpi	OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).	^\d+$	9001411	edong@umich.edu	http://purl.obolibrary.org/obo/OHPI_$1				False	OHPI			OHPI								ohpi	ohpi	OHPI								
+oid	OID Repository	http://www.oid-info.com/introduction.htm	OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.	^[\d.]+$	2.16.840		http://www.oid-info.com/cgi-bin/display?oid=$1&submit=Display&action=display				False										oid	oid											
+olatdv	Medaka Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv	Life cycle stages for Medaka	^\d{7}$	0000210	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/OLATDV_$1				False	OLATDV		OLATDV	OLATDV								olatdv	olatdv	OLATDV								
+om	Ontology of units of Measure	https://github.com/HajoRijgersberg/OM	The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife.  OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM:  Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging		Dimension	hajo.rijgersberg@wur.nl	http://www.ontology-of-units-of-measure.org/resource/om-2/$1				False	OM	OM		OM									om									
+oma.grp	OMA Group	https://omabrowser.org/cgi-bin/gateway.pl	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.	^[A-Z]+$	LCSCCPN		https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1				False			OMA.GRP							oma.grp	oma.grp											
+oma.hog	OMA HOGs	https://omabrowser.org	Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. 	^[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$	0459895		https://omabrowser.org/oma/hog/HOG:$1				False										oma.hog												
+oma.protein	OMA Protein	https://omabrowser.org/cgi-bin/gateway.pl	OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.	^[A-Z0-9]{5}\d+$	HUMAN16963		https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1				False			OMA.PROTEIN							oma.protein	oma.protein											
+omia	Online Mendelian Inheritance in Animals	http://omia.angis.org.au/	Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).	^\d+$	1000		http://omia.angis.org.au/$1/				True			OMIA							omia	omia					omia						
+omiabis	Ontologized MIABIS	https://github.com/OMIABIS/omiabis-dev	An ontological version of MIABIS (Minimum Information About BIobank data Sharing)	^\d{7}$	0001079	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OMIABIS_$1				True	OMIABIS		OMIABIS	OMIABIS								omiabis	omiabis	OMIABIS								
+omim	Online Mendelian Inheritance in Man	https://omim.org/	Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.	^\d+$	603903	ahamosh@jhmi.edu	https://omim.org/entry/$1			OMIM|mim	False	OMIM		OMIM	OMIM					1153	mim	mim					omim		MIM	P492			
+omim.ps	OMIM Phenotypic Series	https://www.omim.org/phenotypicSeriesTitles/all	A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.	^PS\d+$	PS214100	ahamosh@jhmi.edu	https://omim.org/phenotypicSeries/$1			MIMPS|OMIMPS|PS|mim.ps	False																				omim		
+omit	Ontology for MicroRNA Target	http://omit.cis.usouthal.edu/	The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).	^\d{7}$	0000069	huang@southalabama.edu	https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_$1		https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo	OMIT	False	OMIT		OMIT	OMIT						omit	omit	omit	omit	OMIT								
+omo	OBO Metadata Ontology	https://github.com/information-artifact-ontology/ontology-metadata	An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).			cjmungall@lbl.gov	http://purl.obolibrary.org/obo/OMO_$1				False	OMO			OMO								omo	omo	OMO								
+omop	Observational Medical Outcomes Partnership	https://www.ohdsi.org/data-standardization/the-common-data-model/	The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format.								False																						
+omp	Ontology of Microbial Phenotypes	http://microbialphenotypes.org	An ontology of phenotypes covering microbes	^\d{7}$	0005067	jimhu@tamu.edu	http://purl.obolibrary.org/obo/OMP_$1				False	OMP		OMP	OMP								omp	omp	OMP								
+omrse	Ontology of Medically Related Social Entities	https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview	This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations.	^\d{8}$	00000022	hoganwr@gmail.com	http://purl.obolibrary.org/obo/OMRSE_$1		https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo		False	OMRSE		OMRSE	OMRSE								omrse	omrse	OMRSE								
+oncotree	OncoTree	http://oncotree.mskcc.org	OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research.		BLL		http://oncotree.mskcc.org/api/tumorTypes/search/code/$1				False																						
+one	Ontology for Nutritional Epidemiology	https://github.com/cyang0128/Nutritional-epidemiologic-ontologies	An ontology to standardize research output of nutritional epidemiologic studies.	^\d{7}$	0001021	chenyangnutrition@gmail.com	http://purl.obolibrary.org/obo/ONE_$1				False	ONE			ONE								one	one	ONE								
+ons	Ontology for Nutritional Studies	https://github.com/enpadasi/Ontology-for-Nutritional-Studies	The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies.	^\d{7}$	0000060	francesco.vitali@ibba.cnr.it	http://purl.obolibrary.org/obo/ONS_$1				False	ONS			ONS								ons	ons	ONS								
 ontoavida	Ontology for Avida digital evolution platform	https://gitlab.com/fortunalab/ontoavida	"The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).
 
 The lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.
 
 OntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).
 
-More information can be found at https://obofoundry.org/ontology/ontoavida.html"	^\d{8}$	00000001	fortuna@ebd.csic.es	http://purl.obolibrary.org/obo/ONTOAVIDA_$1				False	ONTOAVIDA			ONTOAVIDA								ontoavida	ontoavida	ONTOAVIDA							
-ontoneo	Obstetric and Neonatal Ontology	http://ontoneo.com	The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.	^\d{8}$	00000098	fernanda.farinelli@gmail.com	http://purl.obolibrary.org/obo/ONTONEO_$1				False	ONTONEO		ONTONEO	ONTONEO								ontoneo	ontoneo	ONTONEO							
-oostt	Ontology of Organizational Structures of Trauma centers and Trauma systems	https://github.com/OOSTT/OOSTT	An ontology built for representating the organizational components of trauma centers and trauma systems.	^\d{8}$	00000099	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OOSTT_$1				False	OOSTT		OOSTT	OOSTT								oostt	oostt	OOSTT							
-opb	Ontology of Physics for Biology	http://bioportal.bioontology.org/ontologies/OPB	The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.	^\d+$	00573		http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1				False	OPB		OPB	OPB						opb	opb					opb					
-openalex	OpenAlex	https://openalex.org/	OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other.	^[WAICV]\d{2,}$	W2741809807	hpiwowar@gmail.com	https://openalex.org/$1				False																					
-opl	Ontology for Parasite LifeCycle	https://github.com/OPL-ontology/OPL	The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.	^\d{7}$	0000319	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OPL_$1				False	OPL		OPL	OPL								opl	opl	OPL							
-opm	Orientations of Proteins in Membranes Database	http://opm.phar.umich.edu/	The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.	^[0-9][A-Za-z0-9]{3}$	1h68		http://opm.phar.umich.edu/protein.php?pdbid=$1				False			OPM							opm	opm										
-opmi	Ontology of Precision Medicine and Investigation	https://github.com/OPMI/opmi	OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.	^\d{7}$	0000101	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OPMI_$1				False	OPMI			OPMI								opmi	opmi	OPMI							
-orcid	Open Researcher and Contributor	https://orcid.org	ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.	^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$	0000-0002-5355-2576		https://orcid.org/$1			ORCID|ORCiD	False			ORCID							orcid	orcid							P496			
-ordb	Olfactory Receptor Database	http://senselab.med.yale.edu/OrDB/	The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).	^\d+$	8497		http://senselab.med.yale.edu/ORDB/Data/$1				False			ORDB							ordb	ordb					ordb					
-oridb.sacch	OriDB Saccharomyces	http://cerevisiae.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.	^\d+$	1		http://cerevisiae.oridb.org/details.php?id=$1				False			ORIDB.SACCH							oridb.sacch	oridb.sacch										
-oridb.schizo	OriDB Schizosaccharomyces	http://pombe.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.	^\d+$	1		http://pombe.oridb.org/details.php?id=$1				False			ORIDB.SCHIZO							oridb.schizo	oridb.schizo										
-ornaseq	Ontology of RNA Sequencing	http://kim.bio.upenn.edu/software/ornaseq.shtml	An application ontology designed to annotate next-generation sequencing experiments performed on RNA.	^\d{7}$	0000010	safisher@upenn.edu	http://purl.obolibrary.org/obo/ORNASEQ_$1				False	ORNASEQ			ORNASEQ								ornaseq	ornaseq	ORNASEQ							
-orphanet	Orphanet	http://www.orpha.net/consor/	Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.	^\d+$	85163		http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1			ORPHA	False			Orphanet							orphanet	orphanet					orphanet	Orphanet	P1550			
+More information can be found at https://obofoundry.org/ontology/ontoavida.html"	^\d{8}$	00000001	fortuna@ebd.csic.es	http://purl.obolibrary.org/obo/ONTOAVIDA_$1				False	ONTOAVIDA			ONTOAVIDA								ontoavida	ontoavida	ONTOAVIDA								
+ontoneo	Obstetric and Neonatal Ontology	http://ontoneo.com	The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.	^\d{8}$	00000098	fernanda.farinelli@gmail.com	http://purl.obolibrary.org/obo/ONTONEO_$1				False	ONTONEO		ONTONEO	ONTONEO								ontoneo	ontoneo	ONTONEO								
+oostt	Ontology of Organizational Structures of Trauma centers and Trauma systems	https://github.com/OOSTT/OOSTT	An ontology built for representating the organizational components of trauma centers and trauma systems.	^\d{8}$	00000099	mbrochhausen@gmail.com	http://purl.obolibrary.org/obo/OOSTT_$1				False	OOSTT		OOSTT	OOSTT								oostt	oostt	OOSTT								
+opb	Ontology of Physics for Biology	http://bioportal.bioontology.org/ontologies/OPB	The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.	^\d+$	00573		http://purl.bioontology.org/ontology/OPB?conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1				False	OPB		OPB	OPB						opb	opb					opb						
+openalex	OpenAlex	https://openalex.org/	OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other.	^[WAICV]\d{2,}$	W2741809807	hpiwowar@gmail.com	https://openalex.org/$1				False																						
+opl	Ontology for Parasite LifeCycle	https://github.com/OPL-ontology/OPL	The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.	^\d{7}$	0000319	jiezheng@pennmedicine.upenn.edu	http://purl.obolibrary.org/obo/OPL_$1				False	OPL		OPL	OPL								opl	opl	OPL								
+opm	Orientations of Proteins in Membranes Database	http://opm.phar.umich.edu/	The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.	^[0-9][A-Za-z0-9]{3}$	1h68		http://opm.phar.umich.edu/protein.php?pdbid=$1				False			OPM							opm	opm											
+opmi	Ontology of Precision Medicine and Investigation	https://github.com/OPMI/opmi	OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.	^\d{7}$	0000101	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OPMI_$1				False	OPMI			OPMI								opmi	opmi	OPMI								
+orcid	Open Researcher and Contributor	https://orcid.org	ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.	^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$	0000-0002-5355-2576		https://orcid.org/$1			ORCID|ORCiD	False			ORCID							orcid	orcid								P496			
+ordb	Olfactory Receptor Database	http://senselab.med.yale.edu/OrDB/	The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).	^\d+$	8497		http://senselab.med.yale.edu/ORDB/Data/$1				False			ORDB							ordb	ordb					ordb						
+oridb.sacch	OriDB Saccharomyces	http://cerevisiae.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.	^\d+$	1		http://cerevisiae.oridb.org/details.php?id=$1				False			ORIDB.SACCH							oridb.sacch	oridb.sacch											
+oridb.schizo	OriDB Schizosaccharomyces	http://pombe.oridb.org/index.php	OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.	^\d+$	1		http://pombe.oridb.org/details.php?id=$1				False			ORIDB.SCHIZO							oridb.schizo	oridb.schizo											
+ornaseq	Ontology of RNA Sequencing	http://kim.bio.upenn.edu/software/ornaseq.shtml	An application ontology designed to annotate next-generation sequencing experiments performed on RNA.	^\d{7}$	0000010	safisher@upenn.edu	http://purl.obolibrary.org/obo/ORNASEQ_$1				False	ORNASEQ			ORNASEQ								ornaseq	ornaseq	ORNASEQ								
+orphanet	Orphanet	http://www.orpha.net/consor/	Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.	^\d+$	85163		http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1			ORPHA	False			Orphanet							orphanet	orphanet					orphanet		Orphanet	P1550			
 orphanet.ordo	Orphanet Rare Disease Ontology	https://www.ebi.ac.uk/ols/ontologies/ordo	"The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.
-It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."	^C?\d+$	C023		http://www.orpha.net/ORDO/Orphanet_$1	http://www.orphadata.org/data/ORDO/ordo_orphanet.owl		ordo	False	ordo		ORPHANET.ORDO	ORDO	ORDO					orphanet.ordo	orphanet.ordo		ordo								
-orth	Orthology Ontology	https://github.com/qfo/OrthologyOntology	The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.		HomologyRelation	jfernand@um.es		https://github.com/qfo/OrthologyOntology/raw/master/orthOntology_RC_v2_A.owl			False	ORTH			ORTH									orth								
-orthodb	OrthoDB	https://www.orthodb.org	OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups	^\w+$	Q9P0K8		http://cegg.unige.ch/orthodb/results?searchtext=$1				False			ORTHODB							orthodb	orthodb					orthodb	OrthoDB			uniprot	
-oryzabase.gene	Oryzabase Gene	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.	^\d+$	117		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1				False			ORYZABASE.GENE							oryzabase.gene	oryzabase.gene										
-oryzabase.mutant	Oryzabase Mutant	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.	^\d+$	21393		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1				False			ORYZABASE.MUTANT							oryzabase.mutant	oryzabase.mutant										
-oryzabase.reference	Oryzabase Reference	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.	^\d+$	42840		https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1				False										oryzabase.reference	oryzabase.reference										
-oryzabase.stage	Oryzabase Stage	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.	^\d+$	34		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1				False			ORYZABASE.STAGE							oryzabase.stage	oryzabase.stage										
-oryzabase.strain	Oryzabase Strain	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.	^\d+$	1		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1				False			ORYZABASE.STRAIN							oryzabase.strain	oryzabase.strain										
-otl	Oryza Tag Line	http://oryzatagline.cirad.fr/	Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.	^A[A-Z]+\d+$	AADB12		http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1				False			OTL							otl	otl					otl					
-otol	Open Tree of Life	https://tree.opentreeoflife.org	Identifier for an entity in open tree of life	^[1-9]\d*$	3905431		https://tree.opentreeoflife.org/taxonomy/browse?id=$1				False																		P9157			
-ovae	Ontology of Vaccine Adverse Events	http://www.violinet.org/ovae/	OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). 	^\d{7}$	0000609	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OVAE_$1				False	OVAE		OVAE	OVAE								ovae	ovae	OVAE							
-owl	Web Ontology Language	https://www.w3.org/TR/owl-features/	Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. 		Ontology		http://www.w3.org/2002/07/owl#$1				False			owl																		
-p3db.protein	P3DB Protein	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.	^\d+$	70		http://www.p3db.org/protein.php?id=$1&amp;ref=0				False			P3DB.PROTEIN							p3db.protein	p3db.protein										
-p3db.site	P3DB Site	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.	^\d+$	65		http://www.p3db.org/phosphosite.php?id=$1&ref=0				False			P3DB.SITE							p3db.site	p3db.site										
-paleodb	Paleobiology Database	http://paleodb.org/	The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.	^\d+$	83088		http://fossilworks.org/?a=taxonInfo&taxon_no=$1				False			PALEODB							paleodb	paleodb					paleodb					
-panorama	Panorama Public	https://panoramaweb.org	Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.		FxnI151FMs		https://panoramaweb.org/$1.url				False																					
-panther.family	Protein ANalysis THrough Evolutionary Relationships Classification System	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.	^PTHR\d{5}(\:SF\d{1,3})?$	PTHR12345		http://www.pantherdb.org/panther/family.do?clsAccession=$1				False			PANTHER.FAMILY							panther.family	panther.family								panther		
-panther.node	PANTHER Node	http://pantree.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.	^PTN\d{9}$	PTN000000026		http://www.pantree.org/node/annotationNode.jsp?id=$1				False			PANTHER.NODE							panther.node	panther.node								panther		
-panther.pathway	PANTHER Pathway	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.	^P\d{5}$	P00024		http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1				False			PANTHER.PATHWAY						1161	panther.pathway	panther.pathway								panther		
+It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."	^C?\d+$	C023		http://www.orpha.net/ORDO/Orphanet_$1	http://www.orphadata.org/data/ORDO/ordo_orphanet.owl		ordo	False	ordo		ORPHANET.ORDO	ORDO	ORDO					orphanet.ordo	orphanet.ordo		ordo									
+orth	Orthology Ontology	https://github.com/qfo/OrthologyOntology	The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.		HomologyRelation	jfernand@um.es		https://github.com/qfo/OrthologyOntology/raw/master/orthOntology_RC_v2_A.owl			False	ORTH			ORTH									orth									
+orthodb	OrthoDB	https://www.orthodb.org	OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups	^\w+$	Q9P0K8		http://cegg.unige.ch/orthodb/results?searchtext=$1				False			ORTHODB							orthodb	orthodb					orthodb		OrthoDB			uniprot	
+oryzabase.gene	Oryzabase Gene	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.	^\d+$	117		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1				False			ORYZABASE.GENE							oryzabase.gene	oryzabase.gene											
+oryzabase.mutant	Oryzabase Mutant	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.	^\d+$	21393		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1				False			ORYZABASE.MUTANT							oryzabase.mutant	oryzabase.mutant											
+oryzabase.reference	Oryzabase Reference	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.	^\d+$	42840		https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1				False										oryzabase.reference	oryzabase.reference											
+oryzabase.stage	Oryzabase Stage	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.	^\d+$	34		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1				False			ORYZABASE.STAGE							oryzabase.stage	oryzabase.stage											
+oryzabase.strain	Oryzabase Strain	http://www.shigen.nig.ac.jp/rice/oryzabaseV4/	Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.	^\d+$	1		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1				False			ORYZABASE.STRAIN							oryzabase.strain	oryzabase.strain											
+otl	Oryza Tag Line	http://oryzatagline.cirad.fr/	Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.	^A[A-Z]+\d+$	AADB12		http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1				False			OTL							otl	otl					otl						
+otol	Open Tree of Life	https://tree.opentreeoflife.org	Identifier for an entity in open tree of life	^[1-9]\d*$	3905431		https://tree.opentreeoflife.org/taxonomy/browse?id=$1				False																			P9157			
+ovae	Ontology of Vaccine Adverse Events	http://www.violinet.org/ovae/	OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). 	^\d{7}$	0000609	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/OVAE_$1				False	OVAE		OVAE	OVAE								ovae	ovae	OVAE								
+owl	Web Ontology Language	https://www.w3.org/TR/owl-features/	Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. 		Ontology		http://www.w3.org/2002/07/owl#$1				False			owl																			
+p3db.protein	P3DB Protein	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.	^\d+$	70		http://www.p3db.org/protein.php?id=$1&amp;ref=0				False			P3DB.PROTEIN							p3db.protein	p3db.protein											
+p3db.site	P3DB Site	http://www.p3db.org/	Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.	^\d+$	65		http://www.p3db.org/phosphosite.php?id=$1&ref=0				False			P3DB.SITE							p3db.site	p3db.site											
+paleodb	Paleobiology Database	http://paleodb.org/	The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.	^\d+$	83088		http://fossilworks.org/?a=taxonInfo&taxon_no=$1				False			PALEODB							paleodb	paleodb					paleodb						
+panorama	Panorama Public	https://panoramaweb.org	Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.		FxnI151FMs		https://panoramaweb.org/$1.url				False																						
+panther.family	Protein ANalysis THrough Evolutionary Relationships Classification System	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.	^PTHR\d{5}(\:SF\d{1,3})?$	PTHR12345		http://www.pantherdb.org/panther/family.do?clsAccession=$1				False			PANTHER.FAMILY							panther.family	panther.family									panther		
+panther.node	PANTHER Node	http://pantree.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.	^PTN\d{9}$	PTN000000026		http://www.pantree.org/node/annotationNode.jsp?id=$1				False			PANTHER.NODE							panther.node	panther.node									panther		
+panther.pathway	PANTHER Pathway	http://www.pantherdb.org/	The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.	^P\d{5}$	P00024		http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1				False			PANTHER.PATHWAY						1161	panther.pathway	panther.pathway									panther		
 panther.pthcmp	PANTHER Pathway Component	http://www.pantherdb.org/	"The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway
-components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."	^(G|P|U|C|S)\d{5}$	P00266		http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1				False			PANTHER.PTHCMP							panther.pthcmp	panther.pthcmp								panther		
-pao	Plant Anatomy Ontology	http://www.plantontology.org				jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PAO_$1				True			PAO									pao									
-pass2	Protein Alignment organised as Structural Superfamily	http://caps.ncbs.res.in/pass2	The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.	^\d+$	46977		http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1				True			PASS2							pass2	pass2					pass2					
-pathbank	PathBank	https://pathbank.org	PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.	^(SMP|PW)\d+$	SMP0000219		https://pathbank.org/view/$1				False																					
-pathwaycommons	Pathway Commons	http://www.pathwaycommons.org/pc/	Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.	^\d+$	485991		http://www.pathwaycommons.org/pc/record2.do?id=$1				False			PATHWAYCOMMONS							pathwaycommons	pathwaycommons					pathwaycommons	PathwayCommons				
-pato	Phenotype And Trait Ontology	https://github.com/pato-ontology/pato/	PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.	^\d{7}$	0001998	g.gkoutos@gmail.com	https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:$1				False	PATO	PATO	PATO	PATO						pato	pato	pato	pato	PATO		pato					
-pav	Provenance, Authoring, and Versioning Vocabulary	https://pav-ontology.github.io/pav/	PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.	^[a-z][a-zA-Z]+$	authoredBy		http://purl.org/pav/$1				False	PAV		pav	PAV																	
-paxdb.organism	PaxDb Organism	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.	^\d+$	9606		http://pax-db.org/#!species/$1				False			PAXDB.ORGANISM							paxdb.organism	paxdb.organism										
-paxdb.protein	PaxDb Protein	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.	^\d+$	977869		http://pax-db.org/#!protein/$1				False			PAXDB.PROTEIN							paxdb.protein	paxdb.protein										
-pazar	Pazar Transcription Factor	http://www.pazar.info/	The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.	^TF\w+$	TF0001053		http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1				False			PAZAR							pazar	pazar					pazar					
-pba	Primate Brain Atlas	https://www.blueprintnhpatlas.org/	A controlled vocabulary to support the study of transcription in the primate brain	^\d+$	128011350				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo		False																					
-pcl	Provisional Cell Ontology	https://github.com/obophenotype/provisional_cell_ontology	Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.	^\d{7}$	0011124	davidos@ebi.ac.uk	http://purl.obolibrary.org/obo/PCL_$1				False	PCL			PCL								pcl	pcl	PCL							
-pco	Population and Community Ontology	https://github.com/PopulationAndCommunityOntology/pco	The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.	^\d{7}$	0000021	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PCO_$1				False	PCO	PCO	PCO	PCO				PCO				pco	pco	PCO							
-pd_st	Platynereis stage ontology	http://4dx.embl.de/platy				henrich@embl.de	http://purl.obolibrary.org/obo/PD_ST_$1				True			PD_ST									pd_st									
-pdb	PDB Structure	https://www.wwpdb.org/	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.	^[0-9][A-Za-z0-9]{3}$	2gc4		https://www.wwpdb.org/pdb?id=$1			RCSB_PDB|pdbe|pdbj|wwpdb	False			PDB						1127	pdb	pdb					pdbj	RCSB-PDB	P638			
-pdb-ccd	Chemical Component Dictionary	https://www.ebi.ac.uk/pdbe-srv/pdbechem/	The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.	^\w{1,3}$	AB0		https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1			pdbechem	False			PDB-CCD							pdb-ccd	pdb-ccd										pdb.ligand
-pdb.ligand	Protein Data Bank Ligand	http://www.pdb.org/	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.	^[A-Za-z0-9]+$	TRQ		http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1			PDB_CHEM_ID	False			PDB.LIGAND							pdb.ligand	pdb.ligand					pdbligand		P3636			
-pdc.study	Proteomic Data Commons	https://pdc.cancer.gov/pdc	The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.	^PDC\d+$	PDC000351		https://pdc.cancer.gov/pdc/study/$1				False																					
-pdro	The Prescription of Drugs Ontology	https://github.com/OpenLHS/PDRO	An ontology to describe entities related to prescription of drugs	^\d{7}$	0010039	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/PDRO_$1				False	PDRO		PDRO	PDRO								pdro	pdro	PDRO							
-pdumdv	Platynereis Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv	Life cycle stages for Platynereis dumerilii	^\d{7}$	0001410	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/PDUMDV_$1			PdumDv	False	PDUMDV		PDUMDV	PDUMDV								pdumdv	pdumdv	PDUMDV							
-peco	Plant Experimental Conditions Ontology	http://planteome.org/	A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.	^\d{7}$	0007114	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PECO_$1		https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo		False	PECO	PECO	PECO	PECO								peco	peco	PECO							
-ped	Protein Ensemble Database	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}$	PED00037		https://proteinensemble.org/$1				False										ped											
-ped.ensemble	Protein Ensemble Database ensemble	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}e\d{3}$	PED00017e001		https://proteinensemble.org/$1				False										ped.ensemble									ped		
-peff	PSI Extended File Format	https://www.psidev.info/peff		^\d{7}$	0001011				https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo		True																					
-peptideatlas	PeptideAtlas	http://www.peptideatlas.org/	The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.	^PAp[0-9]{8}$	PAp00000009		https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1				False			PEPTIDEATLAS						2626	peptideatlas	peptideatlas					peptideatlas	PeptideAtlas				
-peptideatlas.dataset	PeptideAtlas Dataset	https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary	Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.	^PASS\d{5}$	PASS01237		http://www.peptideatlas.org/PASS/$1				False										peptideatlas.dataset	peptideatlas.dataset										
-perkinelmer	PerkinElmer cell line collection	https://www.perkinelmer.com/	Cell line collections		SCC111		https://www.perkinelmer.com/searchresult?searchName=$1				False					PerkinElmer																
-peroxibase	Peroxibase	http://peroxibase.toulouse.inra.fr/	Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.	^\d+$	5282		http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1				False			PEROXIBASE							peroxibase	peroxibase					peroxibase	PeroxiBase				
-pesticides	Alan Wood's Pesticides	http://www.alanwood.net/pesticides	The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.		derivatives%2Fthiocyclam%20hydrochloride		http://www.alanwood.net/pesticides/$1.html				False																					
-pfam	Pfam	https://pfam.xfam.org/	The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.	^PF\d{5}$	PF11779		https://pfam.xfam.org/family/$1			PF	False			PFAM						1138	pfam	pfam					pfam	Pfam	P3519			
-pfam.clan	Pfam Clans	https://pfam.xfam.org	Higher order grouping of Pfam families	^CL\d+$	CL0192		https://pfam.xfam.org/clan/$1				False									2758												
-pfr	Proteoform Atlas	http://repository.topdownproteomics.org/proteoforms	Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.	^\d+$	1001		http://repository.topdownproteomics.org/proteoforms/$1			TDR	False																					
-pgdso	Plant Growth and Development Stage	http://www.plantontology.org				po-discuss@plantontology.org	http://purl.obolibrary.org/obo/PGDSO_$1				True			PGDSO									pgdso									
-pgs	Polygenic Score Catalog	http://pgscatalog.org	The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.	^PGS[0-9]{6}$	PGS000018		https://www.pgscatalog.org/pgs/$1				False										pgs											
-pgx	Progenetix	https://progenetix.org/	"The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt ""neoplasm"" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."	^\w{3,15}[-_]\w[\w.-]{3,128}$	pgxbs-kftva5zv		https://progenetix.org/services/ids/$1			Progenetix	False			PGX		Progenetix					pgx	pgx										
-pharmacodb.cell	PharmacoDB Cells	https://pharmacodb.ca/cell_lines	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line.		22RV1_12_2019		https://pharmacodb.ca/cell_lines/$1				False					PharmacoDB																
-pharmacodb.dataset	PharmacoDB Datasets	https://pharmacodb.ca/datasets	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset.	^\d+$	1		https://pharmacodb.ca/datasets/$1				False																					
-pharmacodb.tissue	PharmacoDB Tissues	https://pharmacodb.ca/tissues	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue.	^\d+$	13		https://pharmacodb.ca/tissues/$1				False																					
-pharmgkb.disease	PharmGKB Disease	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA447218		http://www.pharmgkb.org/disease/$1				False			PHARMGKB.DISEASE						2651	pharmgkb.disease	pharmgkb.disease					pharmgkb.disease		P7001			
-pharmgkb.drug	PharmGKB Drug	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA448710		http://www.pharmgkb.org/drug/$1				False			PHARMGKB.DRUG						2652	pharmgkb.drug	pharmgkb.drug					pharmgkb.drug		P7001			
-pharmgkb.gene	Pharmacogenetics and Pharmacogenomics Knowledge Base	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\w+$	PA131		http://www.pharmgkb.org/gene/$1				False			PHARMGKB.GENE	PHARMGKB						pharmgkb.gene	pharmgkb.gene					pharmgkb.gene		P7001			
+components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."	^(G|P|U|C|S)\d{5}$	P00266		http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1				False			PANTHER.PTHCMP							panther.pthcmp	panther.pthcmp									panther		
+pao	Plant Anatomy Ontology	http://www.plantontology.org				jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PAO_$1				True			PAO									pao										
+pass2	Protein Alignment organised as Structural Superfamily	http://caps.ncbs.res.in/pass2	The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.	^\d+$	46977		http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1				True			PASS2							pass2	pass2					pass2						
+pathbank	PathBank	https://pathbank.org	PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.	^(SMP|PW)\d+$	SMP0000219		https://pathbank.org/view/$1				False																						
+pathwaycommons	Pathway Commons	http://www.pathwaycommons.org/pc/	Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.	^\d+$	485991		http://www.pathwaycommons.org/pc/record2.do?id=$1				False			PATHWAYCOMMONS							pathwaycommons	pathwaycommons					pathwaycommons	r3d100012731	PathwayCommons				
+pato	Phenotype And Trait Ontology	https://github.com/pato-ontology/pato/	PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype  annotation.	^\d{7}$	0001998	g.gkoutos@gmail.com	https://www.ebi.ac.uk/ols/ontologies/pato/terms?obo_id=PATO:$1				False	PATO	PATO	PATO	PATO						pato	pato	pato	pato	PATO		pato						
+pav	Provenance, Authoring, and Versioning Vocabulary	https://pav-ontology.github.io/pav/	PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.	^[a-z][a-zA-Z]+$	authoredBy		http://purl.org/pav/$1				False	PAV		pav	PAV																		
+paxdb.organism	PaxDb Organism	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.	^\d+$	9606		http://pax-db.org/#!species/$1				False			PAXDB.ORGANISM							paxdb.organism	paxdb.organism											
+paxdb.protein	PaxDb Protein	http://pax-db.org/	PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.	^\d+$	977869		http://pax-db.org/#!protein/$1				False			PAXDB.PROTEIN							paxdb.protein	paxdb.protein											
+pazar	Pazar Transcription Factor	http://www.pazar.info/	The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.	^TF\w+$	TF0001053		http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1				False			PAZAR							pazar	pazar					pazar						
+pba	Primate Brain Atlas	https://www.blueprintnhpatlas.org/	A controlled vocabulary to support the study of transcription in the primate brain	^\d+$	128011350				https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo		False																						
+pcl	Provisional Cell Ontology	https://github.com/obophenotype/provisional_cell_ontology	Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.	^\d{7}$	0011124	davidos@ebi.ac.uk	http://purl.obolibrary.org/obo/PCL_$1				False	PCL			PCL								pcl	pcl	PCL								
+pco	Population and Community Ontology	https://github.com/PopulationAndCommunityOntology/pco	The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.	^\d{7}$	0000021	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PCO_$1				False	PCO	PCO	PCO	PCO				PCO				pco	pco	PCO								
+pd_st	Platynereis stage ontology	http://4dx.embl.de/platy				henrich@embl.de	http://purl.obolibrary.org/obo/PD_ST_$1				True			PD_ST									pd_st										
+pdb	PDB Structure	https://www.wwpdb.org/	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.	^[0-9][A-Za-z0-9]{3}$	2gc4		https://www.wwpdb.org/pdb?id=$1			RCSB_PDB|pdbe|pdbj|wwpdb	False			PDB						1127	pdb	pdb					pdbj	r3d100010910	RCSB-PDB	P638			
+pdb-ccd	Chemical Component Dictionary	https://www.ebi.ac.uk/pdbe-srv/pdbechem/	The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.	^\w{1,3}$	AB0		https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1			pdbechem	False			PDB-CCD							pdb-ccd	pdb-ccd											pdb.ligand
+pdb.ligand	Protein Data Bank Ligand	http://www.pdb.org/	The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.	^[A-Za-z0-9]+$	TRQ		http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1			PDB_CHEM_ID	False			PDB.LIGAND							pdb.ligand	pdb.ligand					pdbligand			P3636			
+pdc.study	Proteomic Data Commons	https://pdc.cancer.gov/pdc	The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.	^PDC\d+$	PDC000351		https://pdc.cancer.gov/pdc/study/$1				False																						
+pdro	The Prescription of Drugs Ontology	https://github.com/OpenLHS/PDRO	An ontology to describe entities related to prescription of drugs	^\d{7}$	0010039	paul.fabry@usherbrooke.ca	http://purl.obolibrary.org/obo/PDRO_$1				False	PDRO		PDRO	PDRO								pdro	pdro	PDRO								
+pdumdv	Platynereis Developmental Stages	https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv	Life cycle stages for Platynereis dumerilii	^\d{7}$	0001410	frederic.bastian@unil.ch	http://purl.obolibrary.org/obo/PDUMDV_$1			PdumDv	False	PDUMDV		PDUMDV	PDUMDV								pdumdv	pdumdv	PDUMDV								
+peco	Plant Experimental Conditions Ontology	http://planteome.org/	A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.	^\d{7}$	0007114	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/PECO_$1		https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo		False	PECO	PECO	PECO	PECO								peco	peco	PECO								
+ped	Protein Ensemble Database	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}$	PED00037		https://proteinensemble.org/$1				False										ped												
+ped.ensemble	Protein Ensemble Database ensemble	https://proteinensemble.org/	The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.	^PED\d{5}e\d{3}$	PED00017e001		https://proteinensemble.org/$1				False										ped.ensemble										ped		
+peff	PSI Extended File Format	https://www.psidev.info/peff		^\d{7}$	0001011				https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo		True																						
+peptideatlas	PeptideAtlas	http://www.peptideatlas.org/	The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.	^PAp[0-9]{8}$	PAp00000009		https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1				False			PEPTIDEATLAS						2626	peptideatlas	peptideatlas					peptideatlas	r3d100010889	PeptideAtlas				
+peptideatlas.dataset	PeptideAtlas Dataset	https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary	Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.	^PASS\d{5}$	PASS01237		http://www.peptideatlas.org/PASS/$1				False										peptideatlas.dataset	peptideatlas.dataset											
+perkinelmer	PerkinElmer cell line collection	https://www.perkinelmer.com/	Cell line collections		SCC111		https://www.perkinelmer.com/searchresult?searchName=$1				False					PerkinElmer																	
+peroxibase	Peroxibase	http://peroxibase.toulouse.inra.fr/	Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.	^\d+$	5282		http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1				False			PEROXIBASE							peroxibase	peroxibase					peroxibase		PeroxiBase				
+pesticides	Alan Wood's Pesticides	http://www.alanwood.net/pesticides	The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.		derivatives%2Fthiocyclam%20hydrochloride		http://www.alanwood.net/pesticides/$1.html				False																						
+pfam	Pfam	https://pfam.xfam.org/	The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.	^PF\d{5}$	PF11779		https://pfam.xfam.org/family/$1			PF	False			PFAM						1138	pfam	pfam					pfam		Pfam	P3519			
+pfam.clan	Pfam Clans	https://pfam.xfam.org	Higher order grouping of Pfam families	^CL\d+$	CL0192		https://pfam.xfam.org/clan/$1				False									2758													
+pfr	Proteoform Atlas	http://repository.topdownproteomics.org/proteoforms	Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.	^\d+$	1001		http://repository.topdownproteomics.org/proteoforms/$1			TDR	False																						
+pgdso	Plant Growth and Development Stage	http://www.plantontology.org				po-discuss@plantontology.org	http://purl.obolibrary.org/obo/PGDSO_$1				True			PGDSO									pgdso										
+pgs	Polygenic Score Catalog	http://pgscatalog.org	The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.	^PGS[0-9]{6}$	PGS000018		https://www.pgscatalog.org/pgs/$1				False										pgs												
+pgx	Progenetix	https://progenetix.org/	"The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt ""neoplasm"" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."	^\w{3,15}[-_]\w[\w.-]{3,128}$	pgxbs-kftva5zv		https://progenetix.org/services/ids/$1			Progenetix	False			PGX		Progenetix					pgx	pgx						r3d100012820					
+pharmacodb.cell	PharmacoDB Cells	https://pharmacodb.ca/cell_lines	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line.		22RV1_12_2019		https://pharmacodb.ca/cell_lines/$1				False					PharmacoDB																	
+pharmacodb.dataset	PharmacoDB Datasets	https://pharmacodb.ca/datasets	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset.	^\d+$	1		https://pharmacodb.ca/datasets/$1				False																						
+pharmacodb.tissue	PharmacoDB Tissues	https://pharmacodb.ca/tissues	Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue.	^\d+$	13		https://pharmacodb.ca/tissues/$1				False																						
+pharmgkb.disease	PharmGKB Disease	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA447218		http://www.pharmgkb.org/disease/$1				False			PHARMGKB.DISEASE						2651	pharmgkb.disease	pharmgkb.disease					pharmgkb.disease			P7001			
+pharmgkb.drug	PharmGKB Drug	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\d+$	PA448710		http://www.pharmgkb.org/drug/$1				False			PHARMGKB.DRUG						2652	pharmgkb.drug	pharmgkb.drug					pharmgkb.drug			P7001			
+pharmgkb.gene	Pharmacogenetics and Pharmacogenomics Knowledge Base	http://www.pharmgkb.org/	The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.	^PA\w+$	PA131		http://www.pharmgkb.org/gene/$1				False			PHARMGKB.GENE	PHARMGKB						pharmgkb.gene	pharmgkb.gene					pharmgkb.gene			P7001			
 pharmgkb.pathways	PharmGKB Pathways	http://www.pharmgkb.org/	"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. 
-PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."	^PA\d+$	PA146123006		http://www.pharmgkb.org/pathway/$1				False			PHARMGKB.PATHWAYS						2650	pharmgkb.pathways	pharmgkb.pathways					pharmgkb.pathways		P7001			
-phenolexplorer	Phenol-Explorer	http://www.phenol-explorer.eu/foods/	Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.	^\d+$	75		http://phenol-explorer.eu/foods/$1				False			PHENOLEXPLORER							phenolexplorer	phenolexplorer										
-phenx	PhenX Toolkit	https://www.phenxtoolkit.org/	A Web-based catalog of recommended measurement protocols	^\d+$	130502		https://www.phenxtoolkit.org/protocols/view/$1				False	PHENX			PHENX																	
-phipo	Pathogen Host Interaction Phenotype Ontology	https://github.com/PHI-base/phipo	Ontology of species-neutral phenotypes observed in pathogen-host interactions.	^\d{7}$	0000001	alayne.cuzick@rothamsted.ac.uk	http://purl.obolibrary.org/obo/PHIPO_$1				False	PHIPO			PHIPO								phipo	phipo	PHIPO							
-phosphopoint.kinase	PhosphoPoint Kinase	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1				False			PHOSPHOPOINT.KINASE							phosphopoint.kinase	phosphopoint.kinase										
-phosphopoint.protein	PhosphoPoint Phosphoprotein	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0				False			PHOSPHOPOINT.PROTEIN							phosphopoint.protein	phosphopoint.protein										
-phosphosite.protein	PhosphoSite Protein	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.	^\d{5}$	12300		http://www.phosphosite.org/proteinAction.do?id=$1				False			PHOSPHOSITE.PROTEIN							phosphosite.protein	phosphosite.protein										
-phosphosite.residue	PhosphoSite Residue	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.	^\d+$	2842		http://www.phosphosite.org/siteAction.do?id=$1				False			PHOSPHOSITE.RESIDUE							phosphosite.residue	phosphosite.residue										
-phosphosite.sitegroup	PhosphoSite Site Group	https://www.phosphosite.org	Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur.	^\d+$	447860						False																					
-phylomedb	PhylomeDB	http://phylomedb.org/	PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.	^\w+$	Phy000CLXM_RAT		http://phylomedb.org/?seqid=$1				False			PHYLOMEDB							phylomedb	phylomedb					phylomedb	PhylomeDB				
-phytozome.locus	Plant Genome Network	http://www.phytozome.net/	Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.	^[A-Za-z0-9]+$	Glyma0021s00410		http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1			JGI Phytozome	False			PHYTOZOME.LOCUS							phytozome.locus	phytozome.locus										
-pictar	PicTar	https://pictar.mdc-berlin.de/			hsa-let-7a					pictar-vert	True																					
-pid.pathway	NCI Pathway Interaction Database: Pathway	http://pid.nci.nih.gov/	The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	eff796f3-6195-11e5-8ac5-06603eb7f303		http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1			pid	False			PID.PATHWAY						2344	pid.pathway	pid.pathway					pid					
-pigqtldb	Animal Genome Pig QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.	^\d+$	14		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			PIGQTLDB							pigqtldb	pigqtldb					pigqtldb			qtldb		
-pina	Protein Interaction Network Analysis	http://cbg.garvan.unsw.edu.au/pina/	Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q13485		http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1				False			PINA							pina	pina									uniprot	
-piroplasma	PiroplasmaDB	http://piroplasmadb.org/	PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^TA\d+$	TA14985		http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			PIROPLASMA							piroplasma	piroplasma										
-pirsf	PIR Superfamily Classification System	https://pir.georgetown.edu/	The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.	^PIRSF\d{6}$	PIRSF000100		https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1				False			PIRSF						1136	pirsf	pirsf					pirsf	PIRSF				
-pkdb	PK-DB	https://www.hu-berlin.de/?set_language=en&cl=en	PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. 	^PKDB[0-9]{5}$	PKDB00198		https://pk-db.com/data/$1				False										pkdb											
-plana	Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology	https://github.com/obophenotype/planaria-ontology	PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.	^\d{7}$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANA_$1				False	PLANA		PLANA	PLANA								plana	plana	PLANA							
-planp	Planarian Phenotype Ontology	https://github.com/obophenotype/planarian-phenotype-ontology	Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.	^\d+$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANP_$1				False	PLANP			PLANP								planp	planp	PLANP							
-planttfdb	Plant Transcription Factor Database	http://planttfdb.cbi.pku.edu.cn	The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.	^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$	Ath_AT1G01030.1		http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1				False			PLANTTFDB							planttfdb	planttfdb					planttfdb					
-plasmodb	PlasmoDB	http://plasmodb.org/plasmo/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	PF11_0344		http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1			ApiDB_PlasmoDB	False			PLASMODB							plasmodb	plasmodb					plasmodb					
-plo	Plasmodium Life Cycle	http://www.sanger.ac.uk/Users/mb4/PLO/				mb4@sanger.ac.uk	http://purl.obolibrary.org/obo/PLO_$1				True			PLO									plo									
-pmap.cutdb	CutDB	http://cutdb.burnham.org	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).	^\d+$	25782		http://cutdb.burnham.org/relation/show/$1				False			PMAP.CUTDB							pmap.cutdb	pmap.cutdb					pmap.cutdb					
-pmap.substratedb	SubstrateDB	http://substrate.burnham.org/	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.	^\d+$	1915		http://substrate.burnham.org/protein/annotation/$1/html				False			PMAP.SUBSTRATEDB							pmap.substratedb	pmap.substratedb					pmap.substratedb					
-pmc	Pubmed Central	http://europepmc.org/	PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.	^PMC\d+$	PMC3084216		http://europepmc.org/articles/$1			PMC|PMCID	False			PMCID							pmc	pmc					pmc		P932			
-pmdb	Protein Model Database	https://bioinformatics.cineca.it/PMDB/	The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.	^PM\d{7}$	PM0012345		https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1				False			PMDB							pmdb	pmdb					pmdb					
-pmp	Protein Model Portal	http://www.proteinmodelportal.org/	The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q0VCA6		http://www.proteinmodelportal.org/query/uniprot/$1				False			PMP							pmp	pmp					pmp				uniprot	
-pmr	Physical Medicine and Rehabilitation	https://www.auckland.ac.nz/en.html	Resource for the community to store, retrieve, search, reference, and reuse CellML models.	^[a-z0-9]{32,32}$	ebf69ca24298b28b2361e7d43eb52d6c		https://models.physiomeproject.org/exposure/$1				False	PMR			PMR						pmr											
-po	Plant Ontology	http://browser.planteome.org/amigo	The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.	^\d+$	0009089	jaiswalp@science.oregonstate.edu	http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:$1				False	PO	PO	PO	PO					1180	po	po	po	po	PO		po					
-pocketome	Pocketome	http://www.pocketome.org/sfSearch.cgi?act=browseall	Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.	^[A-Za-z_0-9]+$	1433C_TOBAC_1_252		http://www.pocketome.org/files/$1.html				False			POCKETOME							pocketome	pocketome										
-polbase	PolBase	http://polbase.neb.com/	Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.	^[A-Za-z-0-9]+$	19-T4		https://polbase.neb.com/polymerases/$1#sequences				False			POLBASE							polbase	polbase										
-pombase	PomBase	http://www.pombase.org/	PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.	^S\w+(\.)?\w+(\.)?$	SPCC13B11.01		http://www.pombase.org/spombe/result/$1			PomBase	False			PomBase							pombase	pombase					pombase	PomBase	P6245			
-poro	Porifera Ontology	https://github.com/obophenotype/porifera-ontology	An ontology describing the anatomical structures and characteristics of Porifera (sponges)	^\d{7}$	0000550	robert.thacker@stonybrook.edu	http://purl.obolibrary.org/obo/PORO_$1				False	PORO		PORO	PORO								poro	poro	PORO							
-ppdb	Pesticide Properties DataBase	https://sitem.herts.ac.uk/aeru/ppdb/	PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. 	^\d+$	1484		https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm				False																					
-ppo	Plant Phenology Ontology	https://github.com/PlantPhenoOntology/PPO	An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.	^\d{7}$	0002058	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PPO_$1				False	PPO	PPO	PPO	PPO								ppo	ppo	PPO							
-ppr	Europe PMC Preprints	https://europepmc.org	Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.		ppr103739		https://europepmc.org/article/ppr/$1				False																					
-pr	Protein Ontology	http://proconsortium.org	The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.	^\d+$	000000024	dan5@georgetown.edu	https://proconsortium.org/app/entry/PR:$1			PR|PRO	False	PR	PR	PR	PR						pr	pr	pr	pr	PR		pr	PRO	P4926			
-prefixcommons	Prefix Commons	https://prefixcommons.org	A registry of life science prefxes		ChEBI		https://bioregistry.io/metaregistry/prefixcommons/$1				False																					
-pride	PRIDE Controlled Vocabulary	https://github.com/PRIDE-Utilities/pride-ontology	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.	^\d+$	1		https://www.ebi.ac.uk/pride/archive/assays/$1				False	PRIDE		PRIDE		PRIDE					pride	pride		pride			pride	PRIDE				
-pride.project	PRIDE Project	https://www.ebi.ac.uk/pride/	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.	^P(X|R)D\d{6}$	PXD000440		https://www.ebi.ac.uk/pride/archive/projects/$1				False			PRIDE.PROJECT							pride.project	pride.project										
-prints	PRINTS compendium of protein fingerprints	http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/	PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.	^PR\d{5}$	PR00001		http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off				False			PRINTS							prints	prints						PRINTS				
-probonto	Probability Distribution Ontology	http://probonto.org	ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.	^PROB_c\d+$	PROB_c0000005	probonto.dev@gmail.com	https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$1				False			PROBONTO							probonto	probonto		probonto								
-proco	Process Chemistry Ontology	https://github.com/proco-ontology/PROCO	PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry.		0000001	wes_schafer@merck.com	http://purl.obolibrary.org/obo/PROCO_$1				False	PROCO											proco	proco	PROCO							
-prodom	ProDom	http://prodom.prabi.fr/prodom/current/html/home.php	ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.	^PD\d+$	PD10000		http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1				False			PRODOM							prodom	prodom					prodom					
-proglyc	ProGlycProt	http://www.proglycprot.org/	ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.	^[A-Z]C\d{1,3}$	AC119		http://www.proglycprot.org/detail.aspx?ProId=$1				False			PROGLYC							proglyc	proglyc										
-propreo	Proteomics data and process provenance	http://lsdis.cs.uga.edu/projects/glycomics/propreo/				satya30@uga.edu	http://purl.obolibrary.org/obo/PROPREO_$1				True	PROPREO		PROPREO	PROPREO								propreo				propreo					
-prosite	PROSITE	https://www.expasy.org/prosite/	PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.	^PS\d{5}$	PS00001		https://prosite.expasy.org/$1				False			PROSITE							prosite	prosite					prosite	PROSITE	P4355			
-protclustdb	ProtClustDB	https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters	ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.	^\w+$	O80725		https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1				False			PROTCLUSTDB							protclustdb	protclustdb					protclustdb					
-proteomicsdb.peptide	ProteomicsDB Peptide	https://www.proteomicsdb.org/#peptideSearch	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1				False			PROTEOMICSDB.PEPTIDE							proteomicsdb.peptide	proteomicsdb.peptide										
-proteomicsdb.protein	ProteomicsDB Protein	https://www.proteomicsdb.org/#human	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1/summary				False			PROTEOMICSDB.PROTEIN							proteomicsdb.protein	proteomicsdb.protein										
-protonet.cluster	ProtoNet Cluster	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.	^\d+$	4349895		http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1				False			PROTONET.CLUSTER							protonet.cluster	protonet.cluster					protonet.cluster					
-protonet.proteincard	ProtoNet ProteinCard	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.	^\d+$	16941567		http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1				False			PROTONET.PROTEINCARD							protonet.proteincard	protonet.proteincard					protonet.proteincard					
-prov	PROV Namespace	https://www.w3.org/ns/prov	The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web.		Activity		http://www.w3.org/ns/prov#$1				False	PROV		prov										prov								
-pscdb	Protein Structural Change Database	http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html	The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.	^\d+$	051		http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html				False			PSCDB							pscdb	pscdb										
-psdo	Performance Summary Display Ontology	https://github.com/Display-Lab/psdo	"Performance Summary Display Ontology (PSDO) (pronounced ""pseudo"" or ""sudo"") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed."	^\d{7}$	0000055	zachll@umich.edu	http://purl.obolibrary.org/obo/PSDO_$1				False	PSDO			PSDO								psdo	psdo	PSDO							
-pseudogene	PseudoGene	http://www.pseudogene.org	This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.		PGOHUM00000289843		http://tables.pseudogene.org/[?species_name]/$1			pseudogene.org	False				pseudo												pseudogene					
-pseudomonas	Pseudomonas Genome Database	http://www.pseudomonas.com/	The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.	^P\w+$	PSEEN0001		http://www.pseudomonas.com/feature/show/?locus_tag=$1				False			PSEUDOMONAS							pseudomonas	pseudomonas										
-psipar	Protein Affinity Reagents	https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR	Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.	^PAR:\d+$	PAR:0116		https://www.ebi.ac.uk/ontology-lookup/?termId=$1				False			PSIPAR							psipar	psipar										
-pso	Plant Stress Ontology	https://github.com/Planteome/plant-stress-ontology	The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.	^\d{7}$	0000013	cooperl@oregonstate.edu	http://purl.obolibrary.org/obo/PSO_$1				False	PSO			PSO								pso	pso	PSO							
-pspub	Phenoscape Publication	https://wiki.phenoscape.org/wiki/Curation_workflow	Documentation of the Phenoscape Curation Workflow								False																					
-pubchem.bioassay	NCBI PubChem database of bioassay records	https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.	^\d+$	1018		https://pubchem.ncbi.nlm.nih.gov/bioassay/$1				False			PUBCHEM.BIOASSAY						2638	pubchem.bioassay	pubchem.bioassay					pubchem.bioassay			pubchem		
-pubchem.cell	PubChem Cell Line	https://pubchem.ncbi.nlm.nih.gov	Cell Lines in PubChem	^\d+$	31		https://pubchem.ncbi.nlm.nih.gov/cell/$1				False																			pubchem		
-pubchem.classification	PubChem Classification	https://pubchem.ncbi.nlm.nih.gov/classification/	The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records.	^\d+$	87		https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1				False																			pubchem		
-pubchem.compound	PubChem CID	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.	^\d+$	100101		https://pubchem.ncbi.nlm.nih.gov/compound/$1			CID|DSSTox_CID|PUBCHEM_CID|PubChem_Compound_CID|Pubchem|pubchem_id	False			PUBCHEM.COMPOUND		PubChem	000140			2639	pubchem.compound	pubchem.compound					pubchem.compound		P662	pubchem		
-pubchem.element	PubChem Element	https://pubchem.ncbi.nlm.nih.gov/periodic-table	PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number.	^\d+$	1		https://pubchem.ncbi.nlm.nih.gov/element/$1				False																			pubchem		
-pubchem.substance	PubChem Substance ID (SID)	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.	^\d+$	100101		https://pubchem.ncbi.nlm.nih.gov/substance/$1			DSSTox_Generic_SID	False			PUBCHEM.SUBSTANCE			000141				pubchem.substance	pubchem.substance					pubchem.substance		P2153	pubchem		
-publons.researcher	Publons Researcher	https://publons.com/researcher	Database of researchers to track publications, citation metrics, peer reviews, and journal editing work.	^\d+$	1981638		https://publons.com/researcher/$1				False																					
-pubmed	PubMed	https://www.ncbi.nlm.nih.gov/PubMed/	PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.	^\d+$	16333295		https://www.ncbi.nlm.nih.gov/pubmed/$1			MEDLINE|PMID|pmid	False			PUBMED		PubMed	000302			1187	pubmed	pubmed					pubmed		P698			
-puro	Publishing Roles Ontology	http://www.sparontologies.net/ontologies/pro	An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.		RoleInTime		http://purl.org/spar/pro/$1				False																					
-pw	Pathway ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.	^\d{7}$	0000423	gthayman@mcw.edu	http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:$1		https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo		False	PW		PW	PW						pw	pw	pw	pw	PW		pw		P7333			
-pwo	Publishing Workflow Ontology	http://www.sparontologies.net/ontologies/pwo	An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity.		Workflow		http://purl.org/spar/pwo/$1				False																					
-px	ProteomeXchange	http://www.proteomexchange.org/	The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.	^(R)?PXD\d{6}$	PXD000500		http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1				False			PX							px	px										
-pypi	PyPI	https://www.python.org/psf/	The Python Package Index (PyPI) is a repository for Python packages.	^[a-zA-Z_][a-zA-Z0-9\-_]+$	numpy		https://pypi.org/project/$1				False										pypi											
-qtldb	Animal Genome QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False										qtldb											
-qudt	Quantities, Units, Dimensions, and Types Ontology	https://qudt.org	Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.		baseDimensionEnumeration		http://qudt.org/schema/qudt#$1				False	QUDT			QUDT																	
-radiomics	Radiomics Ontology	http://www.radiomics.org/RO	The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]		LK99						False				RO																	
-rapdb.locus	RAP-DB Locus	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.	^Os\S+g\d{7}$	Os01g0883800		https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1			irgsp	False										rapdb.locus											
-rapdb.transcript	RAP-DB Transcript	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.	^Os\S+t\d{7}-\d{2}$	Os01t0883800-02		https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1				False										rapdb.transcript											
-rbk	Rebuilding a Kidney	https://www.rebuildingakidney.org/	(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958		https://www.rebuildingakidney.org/id/$1				False			RBK							rbk	rbk										
-rbo	Radiation Biology Ontology	https://github.com/Radiobiology-Informatics-Consortium/RBO	RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.	^\d{8}$	00000105	daniel.c.berrios@nasa.gov	http://purl.obolibrary.org/obo/RBO_$1				False	RBO			RBO								rbo	rbo	RBO							
-rcb	RIKEN Bioresource Center Cell Bank	https://cell.brc.riken.jp/en/rcb	Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center.	^RCB\d+$	RCB0002		https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1				False					RCB																
-rdf	Resource Description Framework	http://www.w3.org/1999/02/22-rdf-syntax-ns	This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts		RDF		http://www.w3.org/1999/02/22-rdf-syntax-ns#$1				False			rdf																		
-rdfs	RDF Schema	https://www.w3.org/TR/rdf-schema/	RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary.		label		http://www.w3.org/2000/01/rdf-schema#$1				False	RDFS		rdfs	RDFS																	
-rdo	RGD Disease_Ontology	https://ratmine.mcw.edu/ontology/disease/	Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms.	^\d{7}$	9002859			https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.obo		False	RDO			RDO																	
-re3data	re3data	https://datacite.org	Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.	^r3d\d{9,9}$	r3d100010772		https://www.re3data.org/repository/$1				False										re3data											
-reactome	Reactome	https://www.reactome.org/	The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.	^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$	R-BTA-418592		https://reactome.org/content/detail/$1			RE|REACT	False			REACTOME			000411			1155	reactome	reactome					reactome	Reactome	P3937			
-reaxys	Reaxys	https://www.reaxys.com	Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier.	^\d+$	1257009					Beilstein|Reaxys	False									1003									P1579			
-rebase	REBASE restriction enzyme database	http://rebase.neb.com/rebase/	REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.	^\d+$	101		http://rebase.neb.com/rebase/enz/$1.html				False			REBASE						2325	rebase	rebase					rebase	REBASE				
-receptome.family	Human Plasma Membrane Receptome Families	http://www.receptome.org	The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database.		5.1		http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1				False																					
-refseq	Reference Sequence Collection	https://www.ncbi.nlm.nih.gov/projects/RefSeq/	The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.	^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$	NP_012345		https://www.ncbi.nlm.nih.gov/protein/$1			REFSEQ_PROT	False			RefSeq						1098	refseq	refseq					refseq	RefSeq				ncbiprotein
-reo	Reagent Ontology	https://github.com/tis-lab/reagent-ontology	The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.	^\d{7}$	0000079	matt@tislab.org		https://github.com/tis-lab/reagent-ontology/raw/master/reo/ontology_files/reo_pre-merged_or_reasoned_files/reo_reasoned_9-6-12.owl			False														REO							
-repeatsdb.protein	RepeatsDB Protein	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.	^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$	P29894		https://repeatsdb.org/protein/$1				False										repeatsdb.protein										uniprot	
-repeatsdb.structure	RepeatsDB Structure	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.	^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$	2gc4E		https://repeatsdb.org/structure/$1				False										repeatsdb.structure											
-reproduceme	REPRODUCE-ME Ontology	https://w3id.org/reproduceme/research	The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.		MicrobeamManipulation	sheeba.samuel@uni-jena.de					False	REPRODUCE-ME			REPRODUCE-ME									reproduceme								
-resid	Protein covalent bond	https://proteininformationresource.org/resid/	The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.	^AA\d{4}$	AA0001	john.garavelli@ebi.ac.uk	https://proteininformationresource.org/cgi-bin/resid?id=$1				True			RESID						2619	resid	resid	resid				resid					
-reto	Regulation of Transcription Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Transcription			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/ReTO/reto.owl	https://www.bio.ntnu.no/ontology/ReTO/reto.obo		False	RETO			RETO									reto								
-rex	Physico-chemical process	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.	^\d{7}$	0000512		http://purl.obolibrary.org/obo/REX_$1	http://purl.obolibrary.org/obo/rex.owl			True	REX		REX	REX								rex	rex	REX		rex			chebi		
-rexo	Regulation of Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Gene Expression			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/ReXO/rexo.owl	https://www.bio.ntnu.no/ontology/ReXO/rexo.obo		False	REXO			REXO									rexo								
-rfam	Rfam database of RNA families	https://rfam.xfam.org/	The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.	^RF\d{5}$	RF00230		https://rfam.xfam.org/family/$1				False			RFAM						2356	rfam	rfam										
-rgd	Rat Genome Database	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.	^\d{4,}$	7499841		http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1			RGD	False	RGD		RGD	RGD	RGD				2620	rgd	rgd					rgd	RGD	P3853			
-rgd.qtl	Rat Genome Database qTL	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.	^\d+$	1354581		http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1				False			RGD.QTL							rgd.qtl	rgd.qtl										
-rgd.strain	Rat Genome Database strain	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.	^\d+$	5688061		http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1				False			RGD.STRAIN							rgd.strain	rgd.strain										
+PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."	^PA\d+$	PA146123006		http://www.pharmgkb.org/pathway/$1				False			PHARMGKB.PATHWAYS						2650	pharmgkb.pathways	pharmgkb.pathways					pharmgkb.pathways			P7001			
+phenolexplorer	Phenol-Explorer	http://www.phenol-explorer.eu/foods/	Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.	^\d+$	75		http://phenol-explorer.eu/foods/$1				False			PHENOLEXPLORER							phenolexplorer	phenolexplorer						r3d100012197					
+phenx	PhenX Toolkit	https://www.phenxtoolkit.org/	A Web-based catalog of recommended measurement protocols	^\d+$	130502		https://www.phenxtoolkit.org/protocols/view/$1				False	PHENX			PHENX																		
+phipo	Pathogen Host Interaction Phenotype Ontology	https://github.com/PHI-base/phipo	Ontology of species-neutral phenotypes observed in pathogen-host interactions.	^\d{7}$	0000001	alayne.cuzick@rothamsted.ac.uk	http://purl.obolibrary.org/obo/PHIPO_$1				False	PHIPO			PHIPO								phipo	phipo	PHIPO								
+phosphopoint.kinase	PhosphoPoint Kinase	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1				False			PHOSPHOPOINT.KINASE							phosphopoint.kinase	phosphopoint.kinase											
+phosphopoint.protein	PhosphoPoint Phosphoprotein	http://kinase.bioinformatics.tw/	PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.	^\w+$	AURKA		http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0				False			PHOSPHOPOINT.PROTEIN							phosphopoint.protein	phosphopoint.protein											
+phosphosite.protein	PhosphoSite Protein	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.	^\d{5}$	12300		http://www.phosphosite.org/proteinAction.do?id=$1				False			PHOSPHOSITE.PROTEIN							phosphosite.protein	phosphosite.protein											
+phosphosite.residue	PhosphoSite Residue	http://www.phosphosite.org/homeAction.do	PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.	^\d+$	2842		http://www.phosphosite.org/siteAction.do?id=$1				False			PHOSPHOSITE.RESIDUE							phosphosite.residue	phosphosite.residue											
+phosphosite.sitegroup	PhosphoSite Site Group	https://www.phosphosite.org	Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur.	^\d+$	447860						False																						
+phylomedb	PhylomeDB	http://phylomedb.org/	PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.	^\w+$	Phy000CLXM_RAT		http://phylomedb.org/?seqid=$1				False			PHYLOMEDB							phylomedb	phylomedb					phylomedb		PhylomeDB				
+phytozome.locus	Plant Genome Network	http://www.phytozome.net/	Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.	^[A-Za-z0-9]+$	Glyma0021s00410		http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1			JGI Phytozome	False			PHYTOZOME.LOCUS							phytozome.locus	phytozome.locus											
+pictar	PicTar	https://pictar.mdc-berlin.de/			hsa-let-7a					pictar-vert	True																						
+pid.pathway	NCI Pathway Interaction Database: Pathway	http://pid.nci.nih.gov/	The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.	^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$	eff796f3-6195-11e5-8ac5-06603eb7f303		http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1			pid	False			PID.PATHWAY						2344	pid.pathway	pid.pathway					pid						
+pigqtldb	Animal Genome Pig QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.	^\d+$	14		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			PIGQTLDB							pigqtldb	pigqtldb					pigqtldb				qtldb		
+pina	Protein Interaction Network Analysis	http://cbg.garvan.unsw.edu.au/pina/	Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q13485		http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1				False			PINA							pina	pina										uniprot	
+piroplasma	PiroplasmaDB	http://piroplasmadb.org/	PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^TA\d+$	TA14985		http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			PIROPLASMA							piroplasma	piroplasma											
+pirsf	PIR Superfamily Classification System	https://pir.georgetown.edu/	The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.	^PIRSF\d{6}$	PIRSF000100		https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1				False			PIRSF						1136	pirsf	pirsf					pirsf		PIRSF				
+pkdb	PK-DB	https://www.hu-berlin.de/?set_language=en&cl=en	PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. 	^PKDB[0-9]{5}$	PKDB00198		https://pk-db.com/data/$1				False										pkdb												
+plana	Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology	https://github.com/obophenotype/planaria-ontology	PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.	^\d{7}$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANA_$1				False	PLANA		PLANA	PLANA								plana	plana	PLANA								
+planp	Planarian Phenotype Ontology	https://github.com/obophenotype/planarian-phenotype-ontology	Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.	^\d+$	0000001	smr@stowers.org	http://purl.obolibrary.org/obo/PLANP_$1				False	PLANP			PLANP								planp	planp	PLANP								
+planttfdb	Plant Transcription Factor Database	http://planttfdb.cbi.pku.edu.cn	The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.	^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$	Ath_AT1G01030.1		http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1				False			PLANTTFDB							planttfdb	planttfdb					planttfdb						
+plasmodb	PlasmoDB	http://plasmodb.org/plasmo/	AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	PF11_0344		http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1			ApiDB_PlasmoDB	False			PLASMODB							plasmodb	plasmodb					plasmodb	r3d100011569					
+plo	Plasmodium Life Cycle	http://www.sanger.ac.uk/Users/mb4/PLO/				mb4@sanger.ac.uk	http://purl.obolibrary.org/obo/PLO_$1				True			PLO									plo										
+pmap.cutdb	CutDB	http://cutdb.burnham.org	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).	^\d+$	25782		http://cutdb.burnham.org/relation/show/$1				False			PMAP.CUTDB							pmap.cutdb	pmap.cutdb					pmap.cutdb						
+pmap.substratedb	SubstrateDB	http://substrate.burnham.org/	The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.	^\d+$	1915		http://substrate.burnham.org/protein/annotation/$1/html				False			PMAP.SUBSTRATEDB							pmap.substratedb	pmap.substratedb					pmap.substratedb						
+pmc	Pubmed Central	http://europepmc.org/	PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.	^PMC\d+$	PMC3084216		http://europepmc.org/articles/$1			PMC|PMCID	False			PMCID							pmc	pmc					pmc			P932			
+pmdb	Protein Model Database	https://bioinformatics.cineca.it/PMDB/	The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.	^PM\d{7}$	PM0012345		https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1				False			PMDB							pmdb	pmdb					pmdb						
+pmp	Protein Model Portal	http://www.proteinmodelportal.org/	The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q0VCA6		http://www.proteinmodelportal.org/query/uniprot/$1				False			PMP							pmp	pmp					pmp					uniprot	
+pmr	Physical Medicine and Rehabilitation	https://www.auckland.ac.nz/en.html	Resource for the community to store, retrieve, search, reference, and reuse CellML models.	^[a-z0-9]{32,32}$	ebf69ca24298b28b2361e7d43eb52d6c		https://models.physiomeproject.org/exposure/$1				False	PMR			PMR						pmr												
+po	Plant Ontology	http://browser.planteome.org/amigo	The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.	^\d+$	0009089	jaiswalp@science.oregonstate.edu	http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:$1				False	PO	PO	PO	PO					1180	po	po	po	po	PO		po						
+pocketome	Pocketome	http://www.pocketome.org/sfSearch.cgi?act=browseall	Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.	^[A-Za-z_0-9]+$	1433C_TOBAC_1_252		http://www.pocketome.org/files/$1.html				False			POCKETOME							pocketome	pocketome											
+polbase	PolBase	http://polbase.neb.com/	Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.	^[A-Za-z-0-9]+$	19-T4		https://polbase.neb.com/polymerases/$1#sequences				False			POLBASE							polbase	polbase											
+pombase	PomBase	http://www.pombase.org/	PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.	^S\w+(\.)?\w+(\.)?$	SPCC13B11.01		http://www.pombase.org/spombe/result/$1			PomBase	False			PomBase							pombase	pombase					pombase	r3d100011478	PomBase	P6245			
+poro	Porifera Ontology	https://github.com/obophenotype/porifera-ontology	An ontology describing the anatomical structures and characteristics of Porifera (sponges)	^\d{7}$	0000550	robert.thacker@stonybrook.edu	http://purl.obolibrary.org/obo/PORO_$1				False	PORO		PORO	PORO								poro	poro	PORO								
+ppdb	Pesticide Properties DataBase	https://sitem.herts.ac.uk/aeru/ppdb/	PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. 	^\d+$	1484		https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm				False																						
+ppo	Plant Phenology Ontology	https://github.com/PlantPhenoOntology/PPO	An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.	^\d{7}$	0002058	rlwalls2008@gmail.com	http://purl.obolibrary.org/obo/PPO_$1				False	PPO	PPO	PPO	PPO								ppo	ppo	PPO								
+ppr	Europe PMC Preprints	https://europepmc.org	Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.		ppr103739		https://europepmc.org/article/ppr/$1				False																						
+pr	Protein Ontology	http://proconsortium.org	The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.	^\d+$	000000024	dan5@georgetown.edu	https://proconsortium.org/app/entry/PR:$1			PR|PRO	False	PR	PR	PR	PR						pr	pr	pr	pr	PR		pr		PRO	P4926			
+prefixcommons	Prefix Commons	https://prefixcommons.org	A registry of life science prefxes		ChEBI		https://bioregistry.io/metaregistry/prefixcommons/$1				False																						
+pride	PRIDE Controlled Vocabulary	https://github.com/PRIDE-Utilities/pride-ontology	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.	^\d+$	1		https://www.ebi.ac.uk/pride/archive/assays/$1				False	PRIDE		PRIDE		PRIDE					pride	pride		pride			pride		PRIDE				
+pride.project	PRIDE Project	https://www.ebi.ac.uk/pride/	The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.	^P(X|R)D\d{6}$	PXD000440		https://www.ebi.ac.uk/pride/archive/projects/$1				False			PRIDE.PROJECT							pride.project	pride.project											
+prints	PRINTS compendium of protein fingerprints	http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/	PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.	^PR\d{5}$	PR00001		http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false&regexpr=off				False			PRINTS							prints	prints							PRINTS				
+probonto	Probability Distribution Ontology	http://probonto.org	ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae.  It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.	^PROB_c\d+$	PROB_c0000005	probonto.dev@gmail.com	https://www.ebi.ac.uk/ols/ontologies/probonto/terms?short_form=$1				False			PROBONTO							probonto	probonto		probonto									
+proco	Process Chemistry Ontology	https://github.com/proco-ontology/PROCO	PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry.		0000001	wes_schafer@merck.com	http://purl.obolibrary.org/obo/PROCO_$1				False	PROCO											proco	proco	PROCO								
+prodom	ProDom	http://prodom.prabi.fr/prodom/current/html/home.php	ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.	^PD\d+$	PD10000		http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1				False			PRODOM							prodom	prodom					prodom						
+proglyc	ProGlycProt	http://www.proglycprot.org/	ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.	^[A-Z]C\d{1,3}$	AC119		http://www.proglycprot.org/detail.aspx?ProId=$1				False			PROGLYC							proglyc	proglyc											
+propreo	Proteomics data and process provenance	http://lsdis.cs.uga.edu/projects/glycomics/propreo/				satya30@uga.edu	http://purl.obolibrary.org/obo/PROPREO_$1				True	PROPREO		PROPREO	PROPREO								propreo				propreo						
+prosite	PROSITE	https://www.expasy.org/prosite/	PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.	^PS\d{5}$	PS00001		https://prosite.expasy.org/$1				False			PROSITE							prosite	prosite					prosite		PROSITE	P4355			
+protclustdb	ProtClustDB	https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters	ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.	^\w+$	O80725		https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1				False			PROTCLUSTDB							protclustdb	protclustdb					protclustdb						
+proteomicsdb.peptide	ProteomicsDB Peptide	https://www.proteomicsdb.org/#peptideSearch	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1				False			PROTEOMICSDB.PEPTIDE							proteomicsdb.peptide	proteomicsdb.peptide											
+proteomicsdb.protein	ProteomicsDB Protein	https://www.proteomicsdb.org/#human	ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.	^\d+$	53504		https://www.proteomicsdb.org/#human/proteinDetails/$1/summary				False			PROTEOMICSDB.PROTEIN							proteomicsdb.protein	proteomicsdb.protein											
+protonet.cluster	ProtoNet Cluster	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.	^\d+$	4349895		http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1				False			PROTONET.CLUSTER							protonet.cluster	protonet.cluster					protonet.cluster						
+protonet.proteincard	ProtoNet ProteinCard	http://www.protonet.cs.huji.ac.il/	ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.	^\d+$	16941567		http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1				False			PROTONET.PROTEINCARD							protonet.proteincard	protonet.proteincard					protonet.proteincard						
+prov	PROV Namespace	https://www.w3.org/ns/prov	The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web.		Activity		http://www.w3.org/ns/prov#$1				False	PROV		prov										prov									
+pscdb	Protein Structural Change Database	http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html	The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.	^\d+$	051		http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html				False			PSCDB							pscdb	pscdb											
+psdo	Performance Summary Display Ontology	https://github.com/Display-Lab/psdo	"Performance Summary Display Ontology (PSDO) (pronounced ""pseudo"" or ""sudo"") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed."	^\d{7}$	0000055	zachll@umich.edu	http://purl.obolibrary.org/obo/PSDO_$1				False	PSDO			PSDO								psdo	psdo	PSDO								
+pseudogene	PseudoGene	http://www.pseudogene.org	This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.		PGOHUM00000289843		http://tables.pseudogene.org/[?species_name]/$1			pseudogene.org	False				pseudo												pseudogene						
+pseudomonas	Pseudomonas Genome Database	http://www.pseudomonas.com/	The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.	^P\w+$	PSEEN0001		http://www.pseudomonas.com/feature/show/?locus_tag=$1				False			PSEUDOMONAS							pseudomonas	pseudomonas											
+psipar	Protein Affinity Reagents	https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR	Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.	^PAR:\d+$	PAR:0116		https://www.ebi.ac.uk/ontology-lookup/?termId=$1				False			PSIPAR							psipar	psipar											
+pso	Plant Stress Ontology	https://github.com/Planteome/plant-stress-ontology	The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.	^\d{7}$	0000013	cooperl@oregonstate.edu	http://purl.obolibrary.org/obo/PSO_$1				False	PSO			PSO								pso	pso	PSO								
+pspub	Phenoscape Publication	https://wiki.phenoscape.org/wiki/Curation_workflow	Documentation of the Phenoscape Curation Workflow								False																						
+pubchem.bioassay	NCBI PubChem database of bioassay records	https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.	^\d+$	1018		https://pubchem.ncbi.nlm.nih.gov/bioassay/$1				False			PUBCHEM.BIOASSAY						2638	pubchem.bioassay	pubchem.bioassay					pubchem.bioassay				pubchem		
+pubchem.cell	PubChem Cell Line	https://pubchem.ncbi.nlm.nih.gov	Cell Lines in PubChem	^\d+$	31		https://pubchem.ncbi.nlm.nih.gov/cell/$1				False																				pubchem		
+pubchem.classification	PubChem Classification	https://pubchem.ncbi.nlm.nih.gov/classification/	The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records.	^\d+$	87		https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1				False																				pubchem		
+pubchem.compound	PubChem CID	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.	^\d+$	100101		https://pubchem.ncbi.nlm.nih.gov/compound/$1			CID|DSSTox_CID|PUBCHEM_CID|PubChem_Compound_CID|Pubchem|pubchem_id	False			PUBCHEM.COMPOUND		PubChem	000140			2639	pubchem.compound	pubchem.compound					pubchem.compound	r3d100010129		P662	pubchem		
+pubchem.element	PubChem Element	https://pubchem.ncbi.nlm.nih.gov/periodic-table	PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number.	^\d+$	1		https://pubchem.ncbi.nlm.nih.gov/element/$1				False																				pubchem		
+pubchem.substance	PubChem Substance ID (SID)	https://pubchem.ncbi.nlm.nih.gov/	PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.	^\d+$	100101		https://pubchem.ncbi.nlm.nih.gov/substance/$1			DSSTox_Generic_SID	False			PUBCHEM.SUBSTANCE			000141				pubchem.substance	pubchem.substance					pubchem.substance			P2153	pubchem		
+publons.researcher	Publons Researcher	https://publons.com/researcher	Database of researchers to track publications, citation metrics, peer reviews, and journal editing work.	^\d+$	1981638		https://publons.com/researcher/$1				False																						
+pubmed	PubMed	https://www.ncbi.nlm.nih.gov/PubMed/	PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.	^\d+$	16333295		https://www.ncbi.nlm.nih.gov/pubmed/$1			MEDLINE|PMID|pmid	False			PUBMED		PubMed	000302			1187	pubmed	pubmed					pubmed			P698			
+puro	Publishing Roles Ontology	http://www.sparontologies.net/ontologies/pro	An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.		RoleInTime		http://purl.org/spar/pro/$1				False																						
+pw	Pathway ontology	http://rgd.mcw.edu/rgdweb/ontology/search.html	The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.	^\d{7}$	0000423	gthayman@mcw.edu	http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:$1		https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo		False	PW		PW	PW						pw	pw	pw	pw	PW		pw			P7333			
+pwo	Publishing Workflow Ontology	http://www.sparontologies.net/ontologies/pwo	An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity.		Workflow		http://purl.org/spar/pwo/$1				False																						
+px	ProteomeXchange	http://www.proteomexchange.org/	The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.	^(R)?PXD\d{6}$	PXD000500		http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1				False			PX							px	px											
+pypi	PyPI	https://www.python.org/psf/	The Python Package Index (PyPI) is a repository for Python packages.	^[a-zA-Z_][a-zA-Z0-9\-_]+$	numpy		https://pypi.org/project/$1				False										pypi												
+qtldb	Animal Genome QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.	^\d+$	4685		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False										qtldb												
+qudt	Quantities, Units, Dimensions, and Types Ontology	https://qudt.org	Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.		baseDimensionEnumeration		http://qudt.org/schema/qudt#$1				False	QUDT			QUDT																		
+radiomics	Radiomics Ontology	http://www.radiomics.org/RO	The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]		LK99						False				RO																		
+rapdb.locus	RAP-DB Locus	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.	^Os\S+g\d{7}$	Os01g0883800		https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1			irgsp	False										rapdb.locus												
+rapdb.transcript	RAP-DB Transcript	https://rapdb.dna.affrc.go.jp/	Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.	^Os\S+t\d{7}-\d{2}$	Os01t0883800-02		https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1				False										rapdb.transcript												
+rbk	Rebuilding a Kidney	https://www.rebuildingakidney.org/	(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.	^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$	Q-2958		https://www.rebuildingakidney.org/id/$1				False			RBK							rbk	rbk											
+rbo	Radiation Biology Ontology	https://github.com/Radiobiology-Informatics-Consortium/RBO	RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.	^\d{8}$	00000105	daniel.c.berrios@nasa.gov	http://purl.obolibrary.org/obo/RBO_$1				False	RBO			RBO								rbo	rbo	RBO								
+rcb	RIKEN Bioresource Center Cell Bank	https://cell.brc.riken.jp/en/rcb	Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center.	^RCB\d+$	RCB0002		https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1				False					RCB																	
+rdf	Resource Description Framework	http://www.w3.org/1999/02/22-rdf-syntax-ns	This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts		RDF		http://www.w3.org/1999/02/22-rdf-syntax-ns#$1				False			rdf																			
+rdfs	RDF Schema	https://www.w3.org/TR/rdf-schema/	RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary.		label		http://www.w3.org/2000/01/rdf-schema#$1				False	RDFS		rdfs	RDFS																		
+rdo	RGD Disease_Ontology	https://ratmine.mcw.edu/ontology/disease/	Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms.	^\d{7}$	9002859			https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.obo		False	RDO			RDO																		
+re3data	re3data	https://datacite.org	Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.	^r3d\d{9,9}$	r3d100010772		https://www.re3data.org/repository/$1				False										re3data												
+reactome	Reactome	https://www.reactome.org/	The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.	^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$	R-BTA-418592		https://reactome.org/content/detail/$1			RE|REACT	False			REACTOME			000411			1155	reactome	reactome					reactome	r3d100010861	Reactome	P3937			
+reaxys	Reaxys	https://www.reaxys.com	Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier.	^\d+$	1257009					Beilstein|Reaxys	False									1003										P1579			
+rebase	REBASE restriction enzyme database	http://rebase.neb.com/rebase/	REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.	^\d+$	101		http://rebase.neb.com/rebase/enz/$1.html				False			REBASE						2325	rebase	rebase					rebase	r3d100012171	REBASE				
+receptome.family	Human Plasma Membrane Receptome Families	http://www.receptome.org	The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database.		5.1		http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1				False																						
+refseq	Reference Sequence Collection	https://www.ncbi.nlm.nih.gov/projects/RefSeq/	The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.	^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$	NP_012345		https://www.ncbi.nlm.nih.gov/protein/$1			REFSEQ_PROT	False			RefSeq						1098	refseq	refseq					refseq		RefSeq				ncbiprotein
+reo	Reagent Ontology	https://github.com/tis-lab/reagent-ontology	The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.	^\d{7}$	0000079	matt@tislab.org		https://github.com/tis-lab/reagent-ontology/raw/master/reo/ontology_files/reo_pre-merged_or_reasoned_files/reo_reasoned_9-6-12.owl			False														REO								
+repeatsdb.protein	RepeatsDB Protein	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.	^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$	P29894		https://repeatsdb.org/protein/$1				False										repeatsdb.protein											uniprot	
+repeatsdb.structure	RepeatsDB Structure	https://repeatsdb.org/	RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.	^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$	2gc4E		https://repeatsdb.org/structure/$1				False										repeatsdb.structure												
+reproduceme	REPRODUCE-ME Ontology	https://w3id.org/reproduceme/research	The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.		MicrobeamManipulation	sheeba.samuel@uni-jena.de					False	REPRODUCE-ME			REPRODUCE-ME									reproduceme									
+resid	Protein covalent bond	https://proteininformationresource.org/resid/	The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.	^AA\d{4}$	AA0001	john.garavelli@ebi.ac.uk	https://proteininformationresource.org/cgi-bin/resid?id=$1				True			RESID						2619	resid	resid	resid				resid						
+reto	Regulation of Transcription Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Transcription			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/ReTO/reto.owl	https://www.bio.ntnu.no/ontology/ReTO/reto.obo		False	RETO			RETO									reto									
+rex	Physico-chemical process	https://www.ebi.ac.uk/chebi/	An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.	^\d{7}$	0000512		http://purl.obolibrary.org/obo/REX_$1	http://purl.obolibrary.org/obo/rex.owl			True	REX		REX	REX								rex	rex	REX		rex				chebi		
+rexo	Regulation of Gene Expression Ontology	http://www.semantic-systems-biology.org/apo	Regulation of Gene Expression			vladimir.n.mironov@gmail.com		https://www.bio.ntnu.no/ontology/ReXO/rexo.owl	https://www.bio.ntnu.no/ontology/ReXO/rexo.obo		False	REXO			REXO									rexo									
+rfam	Rfam database of RNA families	https://rfam.xfam.org/	The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.	^RF\d{5}$	RF00230		https://rfam.xfam.org/family/$1				False			RFAM						2356	rfam	rfam											
+rgd	Rat Genome Database	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.	^\d{4,}$	7499841		http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1			RGD	False	RGD		RGD	RGD	RGD				2620	rgd	rgd					rgd		RGD	P3853			
+rgd.qtl	Rat Genome Database qTL	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.	^\d+$	1354581		http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1				False			RGD.QTL							rgd.qtl	rgd.qtl											
+rgd.strain	Rat Genome Database strain	http://rgd.mcw.edu/	Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.	^\d+$	5688061		http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1				False			RGD.STRAIN							rgd.strain	rgd.strain											
 rhea	Rhea, the Annotated Reactions Database	https://www.rhea-db.org/	" Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.
 
-Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."	^\d{5}$	12345		https://www.rhea-db.org/rhea/$1			RHEA	False			RHEA						2644	rhea	rhea					rhea					
-ricegap	Rice Genome Annotation Project	http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml	The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os02g13300		http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1				False			RICEGAP							ricegap	ricegap										
-ricenetdb.compound	RiceNetDB Compound	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSC\d{4}$	OSC1416		http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1				False			RICENETDB.COMPOUND							ricenetdb.compound	ricenetdb.compound										
-ricenetdb.gene	RiceNetDB Gene	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}\.\d$	LOC_Os01g49190.1		http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1				False			RICENETDB.GENE							ricenetdb.gene	ricenetdb.gene										
-ricenetdb.mirna	RiceNetDB miRNA	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^osa-miR\d{3,5}[a-z]{0,1}$	osa-miR446		http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1				False			RICENETDB.MIRNA							ricenetdb.mirna	ricenetdb.mirna										
-ricenetdb.protein	RiceNetDB Protein	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os01g49190		http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1				False			RICENETDB.PROTEIN							ricenetdb.protein	ricenetdb.protein										
-ricenetdb.reaction	RiceNetDB Reaction	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSR\d{4}$	OSR0818		http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1				False			RICENETDB.REACTION							ricenetdb.reaction	ricenetdb.reaction										
-rnacentral	RNAcentral	https://rnacentral.org/	RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.	^URS[0-9A-F]{10}(\_\d+)?$	URS0000759CF4		https://rnacentral.org/rna/$1			LNCRNADB	False			RNACENTRAL						3856	rnacentral	rnacentral										
-rnamod	The RNA Modification Database	http://rna.rega.kuleuven.be/rnamods/	A comprehensive listing of post-transcriptionally modified nucleosides from RNA -	^\d{3}$	051		http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1				False																					
-rnamods	RNA Modification Database	http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm	The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.	^\d{3}$	101		http://mods.rna.albany.edu/mods/modifications/view/$1				False			RNAMODS							rnamods	rnamods					rnamods					
-rnao	RNA ontology	https://github.com/bgsu-rna/rnao	Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.	^\d{7}$	0000128	BatchelorC@rsc.org	http://purl.obolibrary.org/obo/RNAO_$1				True	RNAO		RNAO	RNAO								rnao	rnao	RNAO		rnao					
-ro	Relation Ontology	https://oborel.github.io/	The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.	^\d{7}$	0002533	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/RO_$1			RO_proposed_relation|obo_rel|oborel	False	RO	RO	RO	OBOREL						ro	ro	ro	ro	RO		ro		P3590			
-rouge	Rodent Unidentified Gene-Encoded Large Proteins	http://www.kazusa.or.jp/rouge/	The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^m\w+$	mKIAA4200		https://www.kazusa.or.jp/rouge/gfpage/$1				False			ROUGE							rouge	rouge					rouge	Rouge				
+Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."	^\d{5}$	12345		https://www.rhea-db.org/rhea/$1			RHEA	False			RHEA						2644	rhea	rhea					rhea	r3d100010891					
+ricegap	Rice Genome Annotation Project	http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml	The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os02g13300		http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1				False			RICEGAP							ricegap	ricegap											
+ricenetdb.compound	RiceNetDB Compound	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSC\d{4}$	OSC1416		http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1				False			RICENETDB.COMPOUND							ricenetdb.compound	ricenetdb.compound											
+ricenetdb.gene	RiceNetDB Gene	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}\.\d$	LOC_Os01g49190.1		http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1				False			RICENETDB.GENE							ricenetdb.gene	ricenetdb.gene											
+ricenetdb.mirna	RiceNetDB miRNA	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^osa-miR\d{3,5}[a-z]{0,1}$	osa-miR446		http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1				False			RICENETDB.MIRNA							ricenetdb.mirna	ricenetdb.mirna											
+ricenetdb.protein	RiceNetDB Protein	http://bis.zju.edu.cn/ricenetdb/	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^LOC\_Os\d{1,2}g\d{5}$	LOC_Os01g49190		http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1				False			RICENETDB.PROTEIN							ricenetdb.protein	ricenetdb.protein											
+ricenetdb.reaction	RiceNetDB Reaction	http://bis.zju.edu.cn/ricenetdb	RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.	^OSR\d{4}$	OSR0818		http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1				False			RICENETDB.REACTION							ricenetdb.reaction	ricenetdb.reaction											
+rnacentral	RNAcentral	https://rnacentral.org/	RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.	^URS[0-9A-F]{10}(\_\d+)?$	URS0000759CF4		https://rnacentral.org/rna/$1			LNCRNADB	False			RNACENTRAL						3856	rnacentral	rnacentral											
+rnamod	The RNA Modification Database	http://rna.rega.kuleuven.be/rnamods/	A comprehensive listing of post-transcriptionally modified nucleosides from RNA -	^\d{3}$	051		http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1				False																						
+rnamods	RNA Modification Database	http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm	The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.	^\d{3}$	101		http://mods.rna.albany.edu/mods/modifications/view/$1				False			RNAMODS							rnamods	rnamods					rnamods						
+rnao	RNA ontology	https://github.com/bgsu-rna/rnao	Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.	^\d{7}$	0000128	BatchelorC@rsc.org	http://purl.obolibrary.org/obo/RNAO_$1				True	RNAO		RNAO	RNAO								rnao	rnao	RNAO		rnao						
+ro	Relation Ontology	https://oborel.github.io/	The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.	^\d{7}$	0002533	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/RO_$1			RO_proposed_relation|obo_rel|oborel	False	RO	RO	RO	OBOREL						ro	ro	ro	ro	RO		ro			P3590			
+rouge	Rodent Unidentified Gene-Encoded Large Proteins	http://www.kazusa.or.jp/rouge/	The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.	^m\w+$	mKIAA4200		https://www.kazusa.or.jp/rouge/gfpage/$1				False			ROUGE							rouge	rouge					rouge		Rouge				
 rrid	Research Resource Identification	https://scicrunch.org/resolver	"The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.
-The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."	^[a-zA-Z]+.+$	AB_262044		https://scicrunch.org/resolver/RRID:$1				False			RRID							rrid	rrid										
-rs	Rat Strain Ontology	http://rgd.mcw.edu/rgdweb/search/strains.html	Ontology of rat strains	^\d{7}$	0001807	sjwang@mcw.edu	http://purl.obolibrary.org/obo/RS_$1	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.obo		False	RS		RS	RS								rs	rs	RS		rs					
-runbiosimulations	runBioSimulations	https://icahn.mssm.edu/	runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.	^[0-9a-z]{24,24}$	5fde96bdc5f1aa9ff0cce18a		https://run.biosimulations.org/simulations/$1				False										runbiosimulations											
-rxno	Name Reaction Ontology	https://github.com/rsc-ontologies/rxno	RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.	^\d{7}$	0000253	batchelorc@rsc.org	http://purl.obolibrary.org/obo/RXNO_$1		https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo		False	RXNO		RXNO	RXNO								rxno	rxno	RXNO				P2106			
-rxnorm	RxNorm	https://www.nlm.nih.gov/research/umls/rxnorm/	RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.	^[0-9]{1,7}$	221058		https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1			RXCUI	False	RXNORM		RXCUI	RXNORM														P3345			
-sabiork.compound	SABIO-RK Compound	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.	^\d+$	75		http://sabiork.h-its.org/newSearch?q=$1				False										sabiork.compound	sabiork.compound										
-sabiork.ec	SABIO-RK EC Record	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.	^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$	2.7.1.1		http://sabiork.h-its.org/newSearch?q=ecnumber:$1				False			SABIORK.EC							sabiork.ec	sabiork.ec					sabiork.ec				eccode	
-sabiork.kineticrecord	SABIO Reaction Kinetics	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.	^\d+$	5046		http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1				False			SABIORK.KINETICRECORD							sabiork.kineticrecord	sabiork.kineticrecord										
-sabiork.reaction	SABIO-RK Reaction	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.	^\d+$	75		http://sabiork.h-its.org/reacdetails.jsp?reactid=$1			SABIO-RK	False			SABIORK.REACTION						2309	sabiork.reaction	sabiork.reaction					sabiork.reaction	SABIO-RK				
-sael	Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List										True																					
-salk	Salk Institute for Biological Studies	https://www.salk.edu/	Scientific research institute for neuroscience, genetics, immunology, plant biology and more.	^\d{6}$	037727		https://abrc.osu.edu/stocks/number/SALK_$1				False																					
-sao	Subcellular Anatomy Ontology	http://ccdb.ucsd.edu/CCDBWebSite/sao.html		^\d+$	5277619	slarson@ncmir.ucsd.edu	http://uri.neuinfo.org/nif/nifstd/sao$1				True	SAO		SAO	SAO								sao				sao					
-sasbdb	Small Angle Scattering Biological Data Bank	http://www.sasbdb.org/	Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.	^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$	SASDAX8		http://www.sasbdb.org/data/$1				False			SASBDB							sasbdb	sasbdb						SASBDB				
-sbo	Systems Biology Ontology	http://www.ebi.ac.uk/sbo/	The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.	^\d{7}$	0000485	sheriff@ebi.ac.uk	https://www.ebi.ac.uk/sbo/main/SBO:$1				False	SBO		SBO	SBO						sbo	sbo	sbo	sbo	SBO		sbo					
-scdo	Sickle Cell Disease Ontology	https://scdontology.h3abionet.org/	An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.	^\d{7}$	0000728	giant.plankton@gmail.com	http://purl.obolibrary.org/obo/SCDO_$1				False	SCDO			SCDO								scdo	scdo	SCDO							
-schem	Selventa Chemicals	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt	Selventa legacy chemical namespace used with the Biological Expression Language	^A\d{4}$	A0001		https://biopragmatics.github.io/providers/schem/$1				False																					
-schema	Schema.org	https://schema.org	Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.		Person		https://schema.org/$1				False	SCHEMA			SCHEMA																	
-scholia.resource	Scholia Registry	https://scholia.toolforge.org/	A frontend to Wikidata		doi		https://bioregistry.io/metaregistry/scholia/$1				False																					
-scomp	Selventa Complexes	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt	Selventa legacy complex namespace used with the Biological Expression Language	^C\d{4}$	C0001		https://biopragmatics.github.io/providers/scomp/$1				False																					
-scop	Structural Classification of Protein	http://scop.mrc-lmb.cam.ac.uk/scop/	The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes.	^\d+$	47419		http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=$1				False			SCOP							scop	scop					scop					
+The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."	^[a-zA-Z]+.+$	AB_262044		https://scicrunch.org/resolver/RRID:$1				False			RRID							rrid	rrid											
+rs	Rat Strain Ontology	http://rgd.mcw.edu/rgdweb/search/strains.html	Ontology of rat strains	^\d{7}$	0001807	sjwang@mcw.edu	http://purl.obolibrary.org/obo/RS_$1	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl	https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.obo		False	RS		RS	RS								rs	rs	RS		rs						
+runbiosimulations	runBioSimulations	https://icahn.mssm.edu/	runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.	^[0-9a-z]{24,24}$	5fde96bdc5f1aa9ff0cce18a		https://run.biosimulations.org/simulations/$1				False										runbiosimulations												
+rxno	Name Reaction Ontology	https://github.com/rsc-ontologies/rxno	RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.	^\d{7}$	0000253	batchelorc@rsc.org	http://purl.obolibrary.org/obo/RXNO_$1		https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo		False	RXNO		RXNO	RXNO								rxno	rxno	RXNO					P2106			
+rxnorm	RxNorm	https://www.nlm.nih.gov/research/umls/rxnorm/	RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.	^[0-9]{1,7}$	221058		https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1			RXCUI	False	RXNORM		RXCUI	RXNORM															P3345			
+sabiork.compound	SABIO-RK Compound	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.	^\d+$	75		http://sabiork.h-its.org/newSearch?q=$1				False										sabiork.compound	sabiork.compound											
+sabiork.ec	SABIO-RK EC Record	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.	^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$	2.7.1.1		http://sabiork.h-its.org/newSearch?q=ecnumber:$1				False			SABIORK.EC							sabiork.ec	sabiork.ec					sabiork.ec					eccode	
+sabiork.kineticrecord	SABIO Reaction Kinetics	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.	^\d+$	5046		http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1				False			SABIORK.KINETICRECORD							sabiork.kineticrecord	sabiork.kineticrecord											
+sabiork.reaction	SABIO-RK Reaction	http://sabiork.h-its.org/	SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.	^\d+$	75		http://sabiork.h-its.org/reacdetails.jsp?reactid=$1			SABIO-RK	False			SABIORK.REACTION						2309	sabiork.reaction	sabiork.reaction					sabiork.reaction	r3d100011052	SABIO-RK				
+sael	Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List										True																						
+salk	Salk Institute for Biological Studies	https://www.salk.edu/	Scientific research institute for neuroscience, genetics, immunology, plant biology and more.	^\d{6}$	037727		https://abrc.osu.edu/stocks/number/SALK_$1				False																						
+sao	Subcellular Anatomy Ontology	http://ccdb.ucsd.edu/CCDBWebSite/sao.html		^\d+$	5277619	slarson@ncmir.ucsd.edu	http://uri.neuinfo.org/nif/nifstd/sao$1				True	SAO		SAO	SAO								sao				sao						
+sasbdb	Small Angle Scattering Biological Data Bank	http://www.sasbdb.org/	Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.	^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$	SASDAX8		http://www.sasbdb.org/data/$1				False			SASBDB							sasbdb	sasbdb						r3d100012273	SASBDB				
+sbo	Systems Biology Ontology	http://www.ebi.ac.uk/sbo/	The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.	^\d{7}$	0000485	sheriff@ebi.ac.uk	https://www.ebi.ac.uk/sbo/main/SBO:$1				False	SBO		SBO	SBO						sbo	sbo	sbo	sbo	SBO		sbo						
+scdo	Sickle Cell Disease Ontology	https://scdontology.h3abionet.org/	An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.	^\d{7}$	0000728	giant.plankton@gmail.com	http://purl.obolibrary.org/obo/SCDO_$1				False	SCDO			SCDO								scdo	scdo	SCDO								
+schem	Selventa Chemicals	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt	Selventa legacy chemical namespace used with the Biological Expression Language	^A\d{4}$	A0001		https://biopragmatics.github.io/providers/schem/$1				False																						
+schema	Schema.org	https://schema.org	Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.		Person		https://schema.org/$1				False	SCHEMA			SCHEMA																		
+scholia.resource	Scholia Registry	https://scholia.toolforge.org/	A frontend to Wikidata		doi		https://bioregistry.io/metaregistry/scholia/$1				False																						
+scomp	Selventa Complexes	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt	Selventa legacy complex namespace used with the Biological Expression Language	^C\d{4}$	C0001		https://biopragmatics.github.io/providers/scomp/$1				False																						
+scop	Structural Classification of Protein	http://scop.mrc-lmb.cam.ac.uk/scop/	The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes.	^\d+$	47419		http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sunid=$1				False			SCOP							scop	scop					scop						
 scopus	Scopus Researcher	https://www.scopus.com	"Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. 
 Delivering a comprehensive overview of the world's research output in  the fields of science, technology, medicine, social sciences, and arts 
-and humanities, Scopus features smart tools to track, analyze and  visualize research."	^\d+$	56305849200						False																					
-scoro	Scholarly Contributions and Roles Ontology	http://www.sparontologies.net/ontologies/scoro	An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).		IntellectualContribution		http://purl.org/spar/scoro/$1				False																					
-scr	SciCrunch Registry	https://scicrunch.org/browse/resourcedashboard	The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.	^\d+$	003070		http://scicrunch.org/resolver/SCR_$1				False																					
-scretf	ScerTF	http://stormo.wustl.edu/ScerTF/	ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.	^\w+$	RSC3		http://stormo.wustl.edu/ScerTF/details/$1				False			SCRETF							scretf	scretf										
-sdbs	Spectral Database for Organic Compounds	http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi	The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.	^\d+$	4544		http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1				False			SDBS							sdbs	sdbs										
-sdgio	Sustainable Development Goals Interface Ontology	https://github.com/SDG-InterfaceOntology/sdgio	An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.	^\d{8}$	00020134			https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl			False		SDGIO											sdgio	SDGIO							
-sdis	Selventa Diseases	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt	Selventa legacy disease namespace used with the Biological Expression Language	^D\d{4}$	D0001		https://biopragmatics.github.io/providers/sdis/$1				False																					
-sedml.format	SED-ML data format	http://sed-ml.org/	Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	csv		https://sed-ml.org/urns.html#format:$1				False										sedml.format											
-sedml.language	SED-ML model format	http://sed-ml.org/	Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	sbml.level-3.version-2		https://sed-ml.org/urns.html#language:$1				False										sedml.language											
-seed	The SEED;	http://seed-viewer.theseed.org/seedviewer.cgi	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^\w+$	Biotin_biosynthesis		http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1				False			SEED							seed	seed										
-seed.compound	SEED Compound	http://modelseed.org/	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^cpd\d+$	cpd15380		http://modelseed.org/biochem/compounds/$1				False			SEED.COMPOUND							seed.compound	seed.compound										
-seed.reaction	SEED Reactions	http://modelseed.org/biochem/reactions/	ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.	^rxn\d+$	rxn00001		http://modelseed.org/biochem/reactions/$1				False										seed.reaction	seed.reaction										
-sep	Sample processing and separation techniques	https://psidev.info/sepcv	A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.	^\d{5}$	00073	psidev-gps-dev@lists.sourceforge.net	http://purl.obolibrary.org/obo/SEP_$1		https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo		True	SEP		SEP	SEP								sep		SEP		sep					
-sepio	Scientific Evidence and Provenance Information Ontology	https://github.com/monarch-initiative/SEPIO-ontology	An ontology for representing the provenance of scientific claims and the evidence that supports them.	^\d{7}$	0000048	mhb120@gmail.com	http://purl.obolibrary.org/obo/SEPIO_$1				False	SEPIO		SEPIO	SEPIO								sepio	sepio	SEPIO							
-sfam	Selventa Families	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt	Selventa legacy protein family namespace used with the Biological Expression Language	^F\d{4}$	F0001		https://biopragmatics.github.io/providers/sfam/$1				False																					
-sgd	Saccharomyces Genome Database	https://www.yeastgenome.org/	The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.	^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$	S000002493		https://www.yeastgenome.org/locus/$1				False			SGD						2632	sgd	sgd					sgd	SGD	P3406			
-sgd.pathways	Saccharomyces genome database pathways	http://pathway.yeastgenome.org/	Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).	^PWY\w{2}\-\d{3}$	PWY3O-214		http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1				False			SGD.PATHWAYS							sgd.pathways	sgd.pathways					sgd.pathways					
-sgn	Sol Genomics Network	http://solgenomics.net/	The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.	^\d+$	0001		http://solgenomics.net/phenome/locus_display.pl?locus_id=$1				False			SGN							sgn	sgn					sgn					
-sheepqtldb	Animal Genome Sheep QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.	^\d+$	19803		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			SHEEPQTLDB							sheepqtldb	sheepqtldb					sheepqtldb			qtldb		
-sibo	Social Insect Behavior Ontology	https://github.com/obophenotype/sibo	Social Behavior in insects	^\d{7}$	0000509	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/SIBO_$1				True	SIBO		SIBO	SIBO								sibo	sibo	SIBO							
-sider.drug	SIDER Drug	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.	^\d+$	2244		http://sideeffects.embl.de/drugs/$1				False			SIDER.DRUG							sider.drug	sider.drug										
-sider.effect	SIDER Side Effect	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.	^C\d+$	C0017565		http://sideeffects.embl.de/se/$1				False			SIDER.EFFECT							sider.effect	sider.effect									umls	
-sigmaaldrich	Sigma Aldrich	https://www.sigmaaldrich.com	Sigma Aldrich is a life sciences supply vendor.		HPA000698		https://www.sigmaaldrich.com/US/en/product/sigma/$1				False																					
-signaling-gateway	Signaling Gateway	http://www.signaling-gateway.org/molecule	The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.	^A\d{6}$	A001094		http://www.signaling-gateway.org/molecule/query?afcsid=$1				False			SIGNALING-GATEWAY							signaling-gateway	signaling-gateway					signaling-gateway					
-signor	Signaling Network Open Resource	https://signor.uniroma2.it/	SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.	^SIGNOR\-[A-Z]+\d+$	SIGNOR-C41		https://signor.uniroma2.it/relation_result.php?id=$1			SIGNOR	False										signor							SIGNOR				
-signor.relation	SIGNOR Relation	https://signor.uniroma2.it	Identifiers for relationships between proteins and complexes, along with their type and provenance	^SIGNOR-\d+$	SIGNOR-252737						False																			signor		
-sio	Semanticscience Integrated Ontology	https://github.com/micheldumontier/semanticscience	The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.	^\d{6}$	000912	sio-ontology@googlegroups.com	https://www.ebi.ac.uk/ols/ontologies/sio/terms?short_form=$1				False	SIO	SIO	SIO	SIO						sio			sio	SIO							
-sisu	Sequencing Initiative Suomi	http://www.sisuproject.fi/	The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.	^[0-9]+:[0-9]+$	17:41223048		http://search.sisuproject.fi/#/variant/$1				False			SISU							sisu	sisu										
-sitex	SitEx	http://www-bionet.sscc.ru/sitex/	SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.	^\d+$	1000		http://www-bionet.sscc.ru/sitex/index.php?siteid=$1				False			SITEX							sitex	sitex					sitex					
-skip	Stemcell Knowledge and Information Portal	https://skip.stemcellinformatics.org/en/	SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.		SKIP001214		https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1				False					SKIP																
-skos	Simple Knowledge Organization System	https://www.w3.org/2004/02/skos/	SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web		prefLabel		http://www.w3.org/2004/02/skos/core#$1				False	skos		skos																		
-slkbase	SUM Breast Cancer Cell Line Knowledge Base	https://sumlineknowledgebase.com/	Cell line databases/resources	^\d+$	3618		https://sumlineknowledgebase.com/?page_id=$1				False					SLKBase																
-smart	Simple Modular Architecture Research Tool	http://smart.embl-heidelberg.de/	The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.	^SM\d{5}$	SM00015		http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1				False			SMART							smart	smart					smart	SMART				
-smid	C. elegans Small Molecule Identifier Database	https://smid-db.org/	SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications.     	^\d+$	137		https://smid-db.org/smid/$1			SMID-DB	False																					
-smiles	Simplified molecular-input line-entry system	https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html	Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.		COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1						False																		P233			
-smpdb	Small Molecule Pathway Database	https://smpdb.ca/	The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.	^SMP\d+$	SMP0000219		https://smpdb.ca/view/$1			SMP	False			SMPDB						2659	smpdb	smpdb					smpdb					
-snap	Snapshot	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.		Quality		http://snap.humgen.au.dk/views/geneview.cgi?gene=$1				False																snap					
-snomedct	SNOMED CT (International Edition)	http://www.snomedbrowser.com/	SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.	^(\w+)?\d+$	284196006		http://www.snomedbrowser.com/Codes/Details/$1			SCTID|SCTID_2010_1_31|SNOMECT|SNOMED|SNOMEDCT|SNOMEDCTCT|SNOMEDCTCT_2018_03_01|SNOMEDCTCT_2019_03_01|SNOMEDCT_2005_07_31|SNOMEDCT_2010_1_31|SNOMEDCT_2020_03_01|SNOMEDCT_US|SNOMEDCT_US_2015_03_01|SNOMEDCT_US_2016_03_01|SNOMEDCT_US_2018_03_01|SNOMEDCT_US_2018_09_01|SNOMEDCT_US_2019_03_01|SNOMEDCT_US_2019_09_01|SNOMEDCT_US_2020_03_01|SNOMEDCT_US_2020_09_01|SNOMEDCT_US_2021_03_01|SNOMEDCT_US_2021_07_31|SNOMEDCT_US_2021_09_01|SNOMED_CT|SNOMED_CT_US_2018_03_01|SNOWMEDCT|SNOWMEDCT_US|SNOWMEDCT_US_2018_03_01	False	SNOMEDCT		SNOMEDCT	SNOMEDCT						snomedct	snomedct		snomed			snomedct		P5806			
+and humanities, Scopus features smart tools to track, analyze and  visualize research."	^\d+$	56305849200						False																						
+scoro	Scholarly Contributions and Roles Ontology	http://www.sparontologies.net/ontologies/scoro	An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).		IntellectualContribution		http://purl.org/spar/scoro/$1				False																						
+scr	SciCrunch Registry	https://scicrunch.org/browse/resourcedashboard	The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.	^\d+$	003070		http://scicrunch.org/resolver/SCR_$1				False																						
+scretf	ScerTF	http://stormo.wustl.edu/ScerTF/	ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.	^\w+$	RSC3		http://stormo.wustl.edu/ScerTF/details/$1				False			SCRETF							scretf	scretf											
+sdbs	Spectral Database for Organic Compounds	http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi	The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.	^\d+$	4544		http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1				False			SDBS							sdbs	sdbs											
+sdgio	Sustainable Development Goals Interface Ontology	https://github.com/SDG-InterfaceOntology/sdgio	An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.	^\d{8}$	00020134			https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl			False		SDGIO											sdgio	SDGIO								
+sdis	Selventa Diseases	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt	Selventa legacy disease namespace used with the Biological Expression Language	^D\d{4}$	D0001		https://biopragmatics.github.io/providers/sdis/$1				False																						
+sedml.format	SED-ML data format	http://sed-ml.org/	Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	csv		https://sed-ml.org/urns.html#format:$1				False										sedml.format												
+sedml.language	SED-ML model format	http://sed-ml.org/	Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).	^[a-z]+(\..*?)?$	sbml.level-3.version-2		https://sed-ml.org/urns.html#language:$1				False										sedml.language												
+seed	The SEED;	http://seed-viewer.theseed.org/seedviewer.cgi	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^\w+$	Biotin_biosynthesis		http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1				False			SEED							seed	seed											
+seed.compound	SEED Compound	http://modelseed.org/	This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.	^cpd\d+$	cpd15380		http://modelseed.org/biochem/compounds/$1				False			SEED.COMPOUND							seed.compound	seed.compound											
+seed.reaction	SEED Reactions	http://modelseed.org/biochem/reactions/	ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.	^rxn\d+$	rxn00001		http://modelseed.org/biochem/reactions/$1				False										seed.reaction	seed.reaction											
+sep	Sample processing and separation techniques	https://psidev.info/sepcv	A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.	^\d{5}$	00073	psidev-gps-dev@lists.sourceforge.net	http://purl.obolibrary.org/obo/SEP_$1		https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo		True	SEP		SEP	SEP								sep		SEP		sep						
+sepio	Scientific Evidence and Provenance Information Ontology	https://github.com/monarch-initiative/SEPIO-ontology	An ontology for representing the provenance of scientific claims and the evidence that supports them.	^\d{7}$	0000048	mhb120@gmail.com	http://purl.obolibrary.org/obo/SEPIO_$1				False	SEPIO		SEPIO	SEPIO								sepio	sepio	SEPIO								
+sfam	Selventa Families	https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt	Selventa legacy protein family namespace used with the Biological Expression Language	^F\d{4}$	F0001		https://biopragmatics.github.io/providers/sfam/$1				False																						
+sgd	Saccharomyces Genome Database	https://www.yeastgenome.org/	The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.	^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$	S000002493		https://www.yeastgenome.org/locus/$1				False			SGD						2632	sgd	sgd					sgd		SGD	P3406			
+sgd.pathways	Saccharomyces genome database pathways	http://pathway.yeastgenome.org/	Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).	^PWY\w{2}\-\d{3}$	PWY3O-214		http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1				False			SGD.PATHWAYS							sgd.pathways	sgd.pathways					sgd.pathways						
+sgn	Sol Genomics Network	http://solgenomics.net/	The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.	^\d+$	0001		http://solgenomics.net/phenome/locus_display.pl?locus_id=$1				False			SGN							sgn	sgn					sgn						
+sheepqtldb	Animal Genome Sheep QTL	https://www.animalgenome.org/QTLdb	The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.	^\d+$	19803		https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1				False			SHEEPQTLDB							sheepqtldb	sheepqtldb					sheepqtldb				qtldb		
+sibo	Social Insect Behavior Ontology	https://github.com/obophenotype/sibo	Social Behavior in insects	^\d{7}$	0000509	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/SIBO_$1				True	SIBO		SIBO	SIBO								sibo	sibo	SIBO								
+sider.drug	SIDER Drug	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.	^\d+$	2244		http://sideeffects.embl.de/drugs/$1				False			SIDER.DRUG							sider.drug	sider.drug											
+sider.effect	SIDER Side Effect	http://sideeffects.embl.de/	SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.	^C\d+$	C0017565		http://sideeffects.embl.de/se/$1				False			SIDER.EFFECT							sider.effect	sider.effect										umls	
+sigmaaldrich	Sigma Aldrich	https://www.sigmaaldrich.com	Sigma Aldrich is a life sciences supply vendor.		HPA000698		https://www.sigmaaldrich.com/US/en/product/sigma/$1				False																						
+signaling-gateway	Signaling Gateway	http://www.signaling-gateway.org/molecule	The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.	^A\d{6}$	A001094		http://www.signaling-gateway.org/molecule/query?afcsid=$1				False			SIGNALING-GATEWAY							signaling-gateway	signaling-gateway					signaling-gateway						
+signor	Signaling Network Open Resource	https://signor.uniroma2.it/	SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.	^SIGNOR\-[A-Z]+\d+$	SIGNOR-C41		https://signor.uniroma2.it/relation_result.php?id=$1			SIGNOR	False										signor								SIGNOR				
+signor.relation	SIGNOR Relation	https://signor.uniroma2.it	Identifiers for relationships between proteins and complexes, along with their type and provenance	^SIGNOR-\d+$	SIGNOR-252737						False																				signor		
+sio	Semanticscience Integrated Ontology	https://github.com/micheldumontier/semanticscience	The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.	^\d{6}$	000912	sio-ontology@googlegroups.com	https://www.ebi.ac.uk/ols/ontologies/sio/terms?short_form=$1				False	SIO	SIO	SIO	SIO						sio			sio	SIO								
+sisu	Sequencing Initiative Suomi	http://www.sisuproject.fi/	The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.	^[0-9]+:[0-9]+$	17:41223048		http://search.sisuproject.fi/#/variant/$1				False			SISU							sisu	sisu											
+sitex	SitEx	http://www-bionet.sscc.ru/sitex/	SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.	^\d+$	1000		http://www-bionet.sscc.ru/sitex/index.php?siteid=$1				False			SITEX							sitex	sitex					sitex						
+skip	Stemcell Knowledge and Information Portal	https://skip.stemcellinformatics.org/en/	SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.		SKIP001214		https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1				False					SKIP																	
+skos	Simple Knowledge Organization System	https://www.w3.org/2004/02/skos/	SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web		prefLabel		http://www.w3.org/2004/02/skos/core#$1				False	skos		skos																			
+slkbase	SUM Breast Cancer Cell Line Knowledge Base	https://sumlineknowledgebase.com/	Cell line databases/resources	^\d+$	3618		https://sumlineknowledgebase.com/?page_id=$1				False					SLKBase																	
+smart	Simple Modular Architecture Research Tool	http://smart.embl-heidelberg.de/	The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.	^SM\d{5}$	SM00015		http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1				False			SMART							smart	smart					smart		SMART				
+smid	C. elegans Small Molecule Identifier Database	https://smid-db.org/	SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications.     	^\d+$	137		https://smid-db.org/smid/$1			SMID-DB	False																						
+smiles	Simplified molecular-input line-entry system	https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html	Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.		COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1						False																			P233			
+smpdb	Small Molecule Pathway Database	https://smpdb.ca/	The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.	^SMP\d+$	SMP0000219		https://smpdb.ca/view/$1			SMP	False			SMPDB						2659	smpdb	smpdb					smpdb						
+snap	Snapshot	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.		Quality		http://snap.humgen.au.dk/views/geneview.cgi?gene=$1				False																snap						
+snomedct	SNOMED CT (International Edition)	http://www.snomedbrowser.com/	SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.	^(\w+)?\d+$	284196006		http://www.snomedbrowser.com/Codes/Details/$1			SCTID|SCTID_2010_1_31|SNOMECT|SNOMED|SNOMEDCT|SNOMEDCTCT|SNOMEDCTCT_2018_03_01|SNOMEDCTCT_2019_03_01|SNOMEDCT_2005_07_31|SNOMEDCT_2010_1_31|SNOMEDCT_2020_03_01|SNOMEDCT_US|SNOMEDCT_US_2015_03_01|SNOMEDCT_US_2016_03_01|SNOMEDCT_US_2018_03_01|SNOMEDCT_US_2018_09_01|SNOMEDCT_US_2019_03_01|SNOMEDCT_US_2019_09_01|SNOMEDCT_US_2020_03_01|SNOMEDCT_US_2020_09_01|SNOMEDCT_US_2021_03_01|SNOMEDCT_US_2021_07_31|SNOMEDCT_US_2021_09_01|SNOMED_CT|SNOMED_CT_US_2018_03_01|SNOWMEDCT|SNOWMEDCT_US|SNOWMEDCT_US_2018_03_01	False	SNOMEDCT		SNOMEDCT	SNOMEDCT						snomedct	snomedct		snomed			snomedct			P5806			
 snornabase	snoRNABase	https://www-snorna.biotoul.fr/	"A comprehensive database of
 
-human H/ACA and C/D box snoRNAs."		SR0000178						False																					
-snp2tfbs	SNP to Transcription Factor Binding Sites	https://ccg.epfl.ch/snp2tfbs/	SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.	^rs[0-9]+$	rs11603840		https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1				False										snp2tfbs										dbsnp	
-so	Sequence types and features ontology	http://www.sequenceontology.org/	The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.	^\d{7}$	0001157	keilbeck@genetics.utah.edu	http://www.sequenceontology.org/miso/current_release/term/SO:$1		https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo		False	SO	SO	SO	SO						so	so	so	so	SO		so					
-sopharm	Suggested Ontology for Pharmacogenomics	http://www.loria.fr/~coulet/sopharm2.0_description.php				Adrien.Coulet@loria.fr	http://purl.obolibrary.org/obo/SOPHARM_$1				True	SOPHARM		SOPHARM	SOPHARM								sopharm									
-soybase	Glycine max Genome Database	http://soybase.org/	SoyBase is a repository for curated genetics, genomics and related data resources for soybean.	^\w+(\-)?\w+(\-)?\w+$	BARC-013845-01256		http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1				False			SOYBASE							soybase	soybase										
-span	Span	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.								False																					
-spd	Spider Ontology	http://research.amnh.org/atol/files/	An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).	^\d{7}$	0000001	ramirez@macn.gov.ar	http://purl.obolibrary.org/obo/SPD_$1				False	SPD		SPD	SPD								spd	spd	SPD		spd		P4537			
-spdx	Software Package Data Exchange License	https://spdx.org/licenses	The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.	^[0-9A-Za-z\-.]+$	CC-BY-1.0		https://spdx.org/licenses/$1				False										spdx	spdx										
-spike.map	SPIKE Map	http://www.cs.tau.ac.il/~spike/	SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.	^spike\d{5}$	spike00001		http://www.cs.tau.ac.il/~spike/maps/$1.html				False			SPIKE.MAP							spike.map	spike.map										
-splash	Spectra Hash Code	http://mona.fiehnlab.ucdavis.edu/	The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.	^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$	splash10-0zq2000000-77302b0326a418630a84		http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1				False			SPLASH							splash	splash										
-spp	Signaling Pathways Project	https://www.signalingpathways.org/index.jsf	The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.	^10.\w{4}/\w{10}$	10.1621/vwN2g2HaX3		https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1				False										spp											
-sprint	Search PRINTS-S	http://130.88.97.239/dbbrowser/sprint/	SPRINT (Search PRINTS-S) provides an interface to the PRINTS-S database. PRINTS-S is the relational cousin of the PRINTS data bank of protein family fingerprints.	^PR\d{5}$	PR00001		http://130.88.97.239/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=$1				False																sprint					
-srao	FAIRsharing Subject Ontology	https://github.com/FAIRsharing/subject-ontology	The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.	^\d{7}$	0000400	contact@fairsharing.org		https://raw.githubusercontent.com/FAIRsharing/subject-ontology/master/releases/SRAO.owl			False													srao								
-ssbd.dataset	System Science of Biological Dynamics dataset	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1		https://ssbd.riken.jp/database/dataset/$1				False																					
-ssbd.project	System Science of Biological Dynamics project	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1		https://ssbd.riken.jp/database/project/$1				False																					
-stap	Statistical Torsional Angles Potentials	http://psb.kobic.re.kr/STAP/refinement/	STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).	^[0-9][A-Za-z0-9]{3}$	1a24		http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1				False			STAP							stap	stap										
-stato	The Statistical Methods Ontology	http://stato-ontology.org/	STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.	^\d{7}$	0000288	alejandra.gonzalez.beltran@gmail.com	http://purl.obolibrary.org/obo/STATO_$1				False	STATO		STATO	STATO								stato	stato	STATO							
-stitch	Search Tool for Interactions of Chemicals	http://stitch.embl.de/	STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.	^\w{14}$	BQJCRHHNABKAKU		http://stitch.embl.de/interactions/$1				False			STITCH							stitch	stitch					stitch					
-storedb	Store DB	https://www.storedb.org/	STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.	^(STUDY|FILE|DATASET)\d+$	STUDY1040		https://www.storedb.org/?$1				False			STOREDB							storedb	storedb										
-storedb.dataset	STOREDB at University of Cambridge	https://www.storedb.org/	Datasets inside StoreDB	^\d+$	1251		https://www.storedb.org/?STOREDB:DATASET$1				True																			storedb		
-storedb.file	STOREDB at University of Cambridge	https://www.storedb.org/	File inside StoreDB	^\d+$	12929		https://www.storedb.org/store_v3/download.jsp?fileId=$1				False																			storedb		
-storedb.study	STOREDB at University of Cambridge	https://www.storedb.org/	Study inside StoreDB	^\d+$	1174		https://www.storedb.org/store_v3/study.jsp?studyId=$1				False																			storedb		
+human H/ACA and C/D box snoRNAs."		SR0000178						False																						
+snp2tfbs	SNP to Transcription Factor Binding Sites	https://ccg.epfl.ch/snp2tfbs/	SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.	^rs[0-9]+$	rs11603840		https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1				False										snp2tfbs											dbsnp	
+so	Sequence types and features ontology	http://www.sequenceontology.org/	The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.	^\d{7}$	0001157	keilbeck@genetics.utah.edu	http://www.sequenceontology.org/miso/current_release/term/SO:$1		https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo		False	SO	SO	SO	SO						so	so	so	so	SO		so						
+sopharm	Suggested Ontology for Pharmacogenomics	http://www.loria.fr/~coulet/sopharm2.0_description.php				Adrien.Coulet@loria.fr	http://purl.obolibrary.org/obo/SOPHARM_$1				True	SOPHARM		SOPHARM	SOPHARM								sopharm										
+soybase	Glycine max Genome Database	http://soybase.org/	SoyBase is a repository for curated genetics, genomics and related data resources for soybean.	^\w+(\-)?\w+(\-)?\w+$	BARC-013845-01256		http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1				False			SOYBASE							soybase	soybase						r3d100010846					
+span	Span	http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf	Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.								False																						
+spd	Spider Ontology	http://research.amnh.org/atol/files/	An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).	^\d{7}$	0000001	ramirez@macn.gov.ar	http://purl.obolibrary.org/obo/SPD_$1				False	SPD		SPD	SPD								spd	spd	SPD		spd			P4537			
+spdx	Software Package Data Exchange License	https://spdx.org/licenses	The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.	^[0-9A-Za-z\-.]+$	CC-BY-1.0		https://spdx.org/licenses/$1				False										spdx	spdx											
+spike.map	SPIKE Map	http://www.cs.tau.ac.il/~spike/	SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.	^spike\d{5}$	spike00001		http://www.cs.tau.ac.il/~spike/maps/$1.html				False			SPIKE.MAP							spike.map	spike.map											
+splash	Spectra Hash Code	http://mona.fiehnlab.ucdavis.edu/	The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.	^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$	splash10-0zq2000000-77302b0326a418630a84		http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1				False			SPLASH							splash	splash											
+spp	Signaling Pathways Project	https://www.signalingpathways.org/index.jsf	The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.	^10.\w{4}/\w{10}$	10.1621/vwN2g2HaX3		https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1				False										spp												
+sprint	Search PRINTS-S	http://130.88.97.239/dbbrowser/sprint/	SPRINT (Search PRINTS-S) provides an interface to the PRINTS-S database. PRINTS-S is the relational cousin of the PRINTS data bank of protein family fingerprints.	^PR\d{5}$	PR00001		http://130.88.97.239/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=$1				False																sprint						
+srao	FAIRsharing Subject Ontology	https://github.com/FAIRsharing/subject-ontology	The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.	^\d{7}$	0000400	contact@fairsharing.org		https://raw.githubusercontent.com/FAIRsharing/subject-ontology/master/releases/SRAO.owl			False													srao									
+ssbd.dataset	System Science of Biological Dynamics dataset	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1		https://ssbd.riken.jp/database/dataset/$1				False																						
+ssbd.project	System Science of Biological Dynamics project	https://ssbd.riken.jp	Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.	^\d+$	1		https://ssbd.riken.jp/database/project/$1				False																						
+stap	Statistical Torsional Angles Potentials	http://psb.kobic.re.kr/STAP/refinement/	STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).	^[0-9][A-Za-z0-9]{3}$	1a24		http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1				False			STAP							stap	stap											
+stato	The Statistical Methods Ontology	http://stato-ontology.org/	STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.	^\d{7}$	0000288	alejandra.gonzalez.beltran@gmail.com	http://purl.obolibrary.org/obo/STATO_$1				False	STATO		STATO	STATO								stato	stato	STATO								
+stitch	Search Tool for Interactions of Chemicals	http://stitch.embl.de/	STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.	^\w{14}$	BQJCRHHNABKAKU		http://stitch.embl.de/interactions/$1				False			STITCH							stitch	stitch					stitch						
+storedb	Store DB	https://www.storedb.org/	STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.	^(STUDY|FILE|DATASET)\d+$	STUDY1040		https://www.storedb.org/?$1				False			STOREDB							storedb	storedb						r3d100011049					
+storedb.dataset	STOREDB at University of Cambridge	https://www.storedb.org/	Datasets inside StoreDB	^\d+$	1251		https://www.storedb.org/?STOREDB:DATASET$1				True																				storedb		
+storedb.file	STOREDB at University of Cambridge	https://www.storedb.org/	File inside StoreDB	^\d+$	12929		https://www.storedb.org/store_v3/download.jsp?fileId=$1				False																				storedb		
+storedb.study	STOREDB at University of Cambridge	https://www.storedb.org/	Study inside StoreDB	^\d+$	1174		https://www.storedb.org/store_v3/study.jsp?studyId=$1				False																				storedb		
 string	Search Tool for Retrieval of Interacting Genes/Proteins	http://string.embl.de/	"STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.
-The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$	P53350		http://string.embl.de/interactions/$1				False			STRING						2302	string	string					string	STRING			uniprot	
-sty	Semantic Types Ontology	https://lhncbc.nlm.nih.gov/semanticnetwork/	UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.	^T\d{3}$	T039		http://purl.bioontology.org/ontology/STY/$1				False	STY	STY		STY				STY													
+The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$	P53350		http://string.embl.de/interactions/$1				False			STRING						2302	string	string					string	r3d100010604	STRING			uniprot	
+sty	Semantic Types Ontology	https://lhncbc.nlm.nih.gov/semanticnetwork/	UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.	^T\d{3}$	T039		http://purl.bioontology.org/ontology/STY/$1				False	STY	STY		STY				STY														
 subtilist	Bacillus subtilis genome sequencing project	http://genolist.pasteur.fr/SubtiList/	"SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.
-SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."	^BG\d+$	BG11523		http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1				False			SUBTILIST							subtilist	subtilist					subtilist					
+SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."	^BG\d+$	BG11523		http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1				False			SUBTILIST							subtilist	subtilist					subtilist						
 subtiwiki	SubtiWiki	http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page	"SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. 
-Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."	^BSU\d{5}$	BSU29180		http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1				False			SUBTIWIKI							subtiwiki	subtiwiki					subtiwiki					
-sugarbind	SugarBind	http://sugarbind.expasy.org/	The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.	^[A-Za-z]+\/[0-9]+$	lectins/172		http://sugarbind.expasy.org/$1				False			SUGARBIND							sugarbind	sugarbind										
-supfam	SUPERFAMILY	http://supfam.org/SUPERFAMILY/	SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.	^\w+$	SSF57615		http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1				False			SUPFAM							supfam	supfam						SUPFAM				
-sweetrealm	Semantic Web for Earth and Environment Technology Ontology	https://bioportal.bioontology.org/ontologies/SWEET	The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).		ANOVA				https://github.com/EnvironmentOntology/envo/blob/master/src/envo/sources/sweetrealm.obo		False				SWEET																	
-swh	Software Heritage	https://archive.softwareheritage.org	Software Heritage is the universal archive of software source code.	^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\S+)*$	1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d		https://archive.softwareheritage.org/browse/swh:$1				False			SWH							swh	swh										
-swiss-model	SWISS-MODEL Repository	https://swissmodel.expasy.org	The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.	^\w+$	P23298		https://swissmodel.expasy.org/repository/uniprot/$1				False			SWISS-MODEL							swiss-model	swiss-model					swissmodel				uniprot	
-swisslipid	SwissLipid	http://www.swisslipids.org/#/	SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.	^\d+$	000000341		https://www.swisslipids.org/#/entity/SLM:$1			slm|swisslipids	False			SWISSLIPID							slm	swisslipid						SwissLipids	P8691			
-swissregulon	SwissRegulon	http://swissregulon.unibas.ch	A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.	^[A-Za-z0-9]+$	AHR		http://swissregulon.unibas.ch/query/$1				False			SWISSREGULON							swissregulon	swissregulon										
-swo	Software ontology	https://github.com/allysonlister/swo	The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.	^\d{7}$	0000144	allyson.lister@oerc.ox.ac.uk	http://purl.obolibrary.org/obo/SWO_$1	https://github.com/allysonlister/swo/raw/master/release/swo.owl			False	SWO		SWO	SWO								swo	swo	SWO		swo					
-symp	Symptom Ontology	http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page	The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.	^\d{7}$	0019171	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/SYMP_$1			SYMP	False	SYMP		SYMP	SYMP								symp	symp	SYMP				P8656			
-syoid	Gemina Symptom Ontology										True																					
-t3db	Toxin and Toxin Target Database	http://www.t3db.org/	Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.	^T3D\d+$	T3D0001		http://www.t3db.org/toxins/$1				False			T3DB						2662	t3db	t3db					t3db					
-tads	Tick Anatomy Ontology	https://www.vectorbase.org/ontology-browser	The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>	^\d{7}$	0000547	dsonensh@odu.edu	http://purl.obolibrary.org/obo/TADS_$1		http://purl.obolibrary.org/obo/tads.obo		True	TADS		TADS	TADS								tads	tads	TADS							
-tahe	Terminology of Anatomy of Human Embryology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHE_$1				True			TAHE									tahe									
-tahh	Terminology of Anatomy of Human Histology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHH_$1				True			TAHH									tahh									
-tair.gene	TAIR Gene	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.	^\d{7}$	2200934		http://arabidopsis.org/servlets/TairObject?accession=Gene:$1				False			TAIR.GENE							tair.gene	tair.gene					tair.gene					
-tair.locus	The Arabidopsis Information Resource	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.	^\d+$	2200950		http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1				False			TAIR.LOCUS							tair.locus	tair.locus					tair.locus					
-tair.protein	TAIR Protein	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept	^\d{10}$	1009107926		http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1				False			TAIR.PROTEIN							tair.protein	tair.protein					tair.protein					
-tao	Teleost Anatomy Ontology	http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology	Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa	^\d{7}$	0000086	wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/TAO_$1			TAO_RETIRED	True	TAO		TAO	TAO								tao				tao					
-tarbase	TarBase	http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index	TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.	^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$	hsa-let-7a-2-3p		http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1				False			TARBASE							tarbase	tarbase										
-taxrank	Taxonomic rank vocabulary	https://github.com/phenoscape/taxrank	A vocabulary of taxonomic ranks (species, family, phylum, etc)	^\d{7}$	0000001	balhoff@renci.org	http://purl.obolibrary.org/obo/TAXRANK_$1				False	TAXRANK		TAXRANK	TAXRANK								taxrank	taxrank	TAXRANK		taxrank					
-tcb	Tick Cell Biobank	https://www.pirbright.ac.uk/tick-cell-lines-views-page	Cell line collections	^\d+$	2966		https://www.pirbright.ac.uk/node/$1				False					TCB																
-tcdb	Transporter Classification Database	https://www.tcdb.org	The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.	^\d+(\.[A-Z])?(\.\d+)?(\.\d+)?(\.\d+)?$	5.A.1.1.1		http://www.tcdb.org/search/result.php?tc=$1			TC	False			TCDB						2756	tcdb	tcdb					tcdb	TCDB	P7260			
-te	Terminologia Embryologica	https://ifaa.unifr.ch/	The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]		E5.11.2.0.0.0.4						False																		P1693			
-tfclass	Classification of Transcription Factors in Mammalia	http://tfclass.bioinf.med.uni-goettingen.de	TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..		2.1.1		http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1				False																					
-tgd	Tetrahymena Genome Database	http://ciliate.org/index.php/	The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.	^TTHERM\_\d+$	TTHERM_00648910		http://ciliate.org/index.php/feature/details/$1				False			TGD							tgd	tgd					tgd					
-tgma	Mosquito gross anatomy ontology	https://www.vectorbase.org/ontology-browser	A structured controlled vocabulary of the anatomy of mosquitoes.	^\d{7}$	0000984	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/TGMA_$1		http://purl.obolibrary.org/obo/tgma.obo		True	TGMA		TGMA	TGMA								tgma	tgma	TGMA		tgma					
-tgn	Getty Thesaurus of Geographic Names	https://www.getty.edu/research/tools/vocabularies/tgn/		^\d+$	1023371		http://vocab.getty.edu/page/tgn/$1				True																					
-th	Terminologia Histologica	https://ifaa.unifr.ch/	The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]		H3.03.00.0.00007						False																					
-thermofisher	Thermo Fisher Scientific	https://www.thermofisher.com	ThermoFisher is a life sciences supply vendor.		OSR00185W		https://www.thermofisher.com/antibody/product/$1				False																					
-tigrfam	TIGR protein families	http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi	TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.	^TIGR\d+$	TIGR00010		https://www.ncbi.nlm.nih.gov/cdd?term=$1				False			TIGRFAM						1141	tigrfam	tigrfam										
-tkg	Tohoku University cell line catalog	http://www2.idac.tohoku.ac.jp/dep/ccr/	Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells.	^\d+$	0221		http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html				False					TKG																
-tngb	Telethon Network of Genetic Biobanks	http://biobanknetwork.telethon.it/	Cell line collections	^\d+$	67035		http://biobanknetwork.telethon.it/Sample/View?sampleId=$1				False					TNGB																
-to	Plant Trait Ontology	http://browser.planteome.org/amigo	A controlled vocabulary to describe phenotypic traits in plants.	^\d{7}$	0000630	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/TO_$1				False	TO	TO	TO	PTO								to	to	TO							
-tokue	TOKU-E Cell-culture Database	http://cell-lines.toku-e.com	Cell line databases/resources				http://cell-lines.toku-e.com/Cell-Lines_$1.html				True					TOKU-E																
+Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."	^BSU\d{5}$	BSU29180		http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1				False			SUBTIWIKI							subtiwiki	subtiwiki					subtiwiki						
+sugarbind	SugarBind	http://sugarbind.expasy.org/	The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.	^[A-Za-z]+\/[0-9]+$	lectins/172		http://sugarbind.expasy.org/$1				False			SUGARBIND							sugarbind	sugarbind											
+supfam	SUPERFAMILY	http://supfam.org/SUPERFAMILY/	SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.	^\w+$	SSF57615		http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1				False			SUPFAM							supfam	supfam							SUPFAM				
+sweetrealm	Semantic Web for Earth and Environment Technology Ontology	https://bioportal.bioontology.org/ontologies/SWEET	The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).		ANOVA				https://github.com/EnvironmentOntology/envo/blob/master/src/envo/sources/sweetrealm.obo		False				SWEET																		
+swh	Software Heritage	https://archive.softwareheritage.org	Software Heritage is the universal archive of software source code.	^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\S+)*$	1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d		https://archive.softwareheritage.org/browse/swh:$1				False			SWH							swh	swh											
+swiss-model	SWISS-MODEL Repository	https://swissmodel.expasy.org	The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.	^\w+$	P23298		https://swissmodel.expasy.org/repository/uniprot/$1				False			SWISS-MODEL							swiss-model	swiss-model					swissmodel					uniprot	
+swisslipid	SwissLipid	http://www.swisslipids.org/#/	SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.	^\d+$	000000341		https://www.swisslipids.org/#/entity/SLM:$1			slm|swisslipids	False			SWISSLIPID							slm	swisslipid						r3d100012603	SwissLipids	P8691			
+swissregulon	SwissRegulon	http://swissregulon.unibas.ch	A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.	^[A-Za-z0-9]+$	AHR		http://swissregulon.unibas.ch/query/$1				False			SWISSREGULON							swissregulon	swissregulon											
+swo	Software ontology	https://github.com/allysonlister/swo	The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.	^\d{7}$	0000144	allyson.lister@oerc.ox.ac.uk	http://purl.obolibrary.org/obo/SWO_$1	https://github.com/allysonlister/swo/raw/master/release/swo.owl			False	SWO		SWO	SWO								swo	swo	SWO		swo						
+symp	Symptom Ontology	http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page	The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.	^\d{7}$	0019171	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/SYMP_$1			SYMP	False	SYMP		SYMP	SYMP								symp	symp	SYMP					P8656			
+syoid	Gemina Symptom Ontology										True																						
+t3db	Toxin and Toxin Target Database	http://www.t3db.org/	Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.	^T3D\d+$	T3D0001		http://www.t3db.org/toxins/$1				False			T3DB						2662	t3db	t3db					t3db	r3d100012189					
+tads	Tick Anatomy Ontology	https://www.vectorbase.org/ontology-browser	The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i>	^\d{7}$	0000547	dsonensh@odu.edu	http://purl.obolibrary.org/obo/TADS_$1		http://purl.obolibrary.org/obo/tads.obo		True	TADS		TADS	TADS								tads	tads	TADS								
+tahe	Terminology of Anatomy of Human Embryology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHE_$1				True			TAHE									tahe										
+tahh	Terminology of Anatomy of Human Histology					pierre.sprumont@unifr.ch	http://purl.obolibrary.org/obo/TAHH_$1				True			TAHH									tahh										
+tair.gene	TAIR Gene	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.	^\d{7}$	2200934		http://arabidopsis.org/servlets/TairObject?accession=Gene:$1				False			TAIR.GENE							tair.gene	tair.gene					tair.gene						
+tair.locus	The Arabidopsis Information Resource	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.	^\d+$	2200950		http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1				False			TAIR.LOCUS							tair.locus	tair.locus					tair.locus						
+tair.protein	TAIR Protein	http://arabidopsis.org/index.jsp	The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept	^\d{10}$	1009107926		http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1				False			TAIR.PROTEIN							tair.protein	tair.protein					tair.protein						
+tao	Teleost Anatomy Ontology	http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology	Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa	^\d{7}$	0000086	wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/TAO_$1			TAO_RETIRED	True	TAO		TAO	TAO								tao				tao						
+tarbase	TarBase	http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index	TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.	^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$	hsa-let-7a-2-3p		http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1				False			TARBASE							tarbase	tarbase											
+taxrank	Taxonomic rank vocabulary	https://github.com/phenoscape/taxrank	A vocabulary of taxonomic ranks (species, family, phylum, etc)	^\d{7}$	0000001	balhoff@renci.org	http://purl.obolibrary.org/obo/TAXRANK_$1				False	TAXRANK		TAXRANK	TAXRANK								taxrank	taxrank	TAXRANK		taxrank						
+tcb	Tick Cell Biobank	https://www.pirbright.ac.uk/tick-cell-lines-views-page	Cell line collections	^\d+$	2966		https://www.pirbright.ac.uk/node/$1				False					TCB																	
+tcdb	Transporter Classification Database	https://www.tcdb.org	The database details a comprehensive  IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.	^\d+(\.[A-Z])?(\.\d+)?(\.\d+)?(\.\d+)?$	5.A.1.1.1		http://www.tcdb.org/search/result.php?tc=$1			TC	False			TCDB						2756	tcdb	tcdb					tcdb		TCDB	P7260			
+te	Terminologia Embryologica	https://ifaa.unifr.ch/	The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]		E5.11.2.0.0.0.4						False																			P1693			
+tfclass	Classification of Transcription Factors in Mammalia	http://tfclass.bioinf.med.uni-goettingen.de	TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..		2.1.1		http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1				False																						
+tgd	Tetrahymena Genome Database	http://ciliate.org/index.php/	The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.	^TTHERM\_\d+$	TTHERM_00648910		http://ciliate.org/index.php/feature/details/$1				False			TGD							tgd	tgd					tgd						
+tgma	Mosquito gross anatomy ontology	https://www.vectorbase.org/ontology-browser	A structured controlled vocabulary of the anatomy of mosquitoes.	^\d{7}$	0000984	topalis@imbb.forth.gr	http://purl.obolibrary.org/obo/TGMA_$1		http://purl.obolibrary.org/obo/tgma.obo		True	TGMA		TGMA	TGMA								tgma	tgma	TGMA		tgma						
+tgn	Getty Thesaurus of Geographic Names	https://www.getty.edu/research/tools/vocabularies/tgn/		^\d+$	1023371		http://vocab.getty.edu/page/tgn/$1				True																						
+th	Terminologia Histologica	https://ifaa.unifr.ch/	The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]		H3.03.00.0.00007						False																						
+thermofisher	Thermo Fisher Scientific	https://www.thermofisher.com	ThermoFisher is a life sciences supply vendor.		OSR00185W		https://www.thermofisher.com/antibody/product/$1				False																						
+tigrfam	TIGR protein families	http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi	TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.	^TIGR\d+$	TIGR00010		https://www.ncbi.nlm.nih.gov/cdd?term=$1				False			TIGRFAM						1141	tigrfam	tigrfam											
+tkg	Tohoku University cell line catalog	http://www2.idac.tohoku.ac.jp/dep/ccr/	Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells.	^\d+$	0221		http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html				False					TKG																	
+tngb	Telethon Network of Genetic Biobanks	http://biobanknetwork.telethon.it/	Cell line collections	^\d+$	67035		http://biobanknetwork.telethon.it/Sample/View?sampleId=$1				False					TNGB																	
+to	Plant Trait Ontology	http://browser.planteome.org/amigo	A controlled vocabulary to describe phenotypic traits in plants.	^\d{7}$	0000630	jaiswalp@science.oregonstate.edu	http://purl.obolibrary.org/obo/TO_$1				False	TO	TO	TO	PTO								to	to	TO								
+tokue	TOKU-E Cell-culture Database	http://cell-lines.toku-e.com	Cell line databases/resources				http://cell-lines.toku-e.com/Cell-Lines_$1.html				True					TOKU-E																	
 tol	Tree of Life Web Project ID	http://tolweb.org/tree/	"The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). 
 
-Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."	^\d+$	98034		http://tolweb.org/$1			tol.webproj	False			TOL							tol	tol							P5221			
-topdb	Topology Data Bank of Transmembrane Proteins	http://topdb.enzim.hu/	The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.	^[A-Z0-9]+$	AP00378		http://topdb.enzim.hu/?m=show&id=$1				False			TOPDB						2789	topdb	topdb					topdb					
-topfind	TopFind	https://topfind.clip.msl.ubc.ca	TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q9UKQ2		http://clipserve.clip.ubc.ca/topfind/proteins/$1				False			TOPFIND							topfind	topfind									uniprot	
-toxoplasma	ToxoDB	http://toxodb.org/toxo/	ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TGME49_053730		http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TOXOPLASMA							toxoplasma	toxoplasma										
-trans	Pathogen Transmission Ontology	https://github.com/DiseaseOntology/PathogenTransmissionOntology	The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.	^\d{7}$	0000024	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/TRANS_$1				False	TRANS		TRANS	TRANS								trans	trans	TRANS							
-transyt	Transport Systems Tracker	https://www.bio.di.uminho.pt/	The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.	^T[A-Z]\d{7}$	TR0000001		https://transyt.bio.di.uminho.pt/reactions/$1				False										transyt											
-treebase	TreeBASE	http://treebase.org/	TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.	^TB[1,2]?:[A-Z][a-z]?\d+$	TB2:S1000		http://purl.org/phylo/treebase/phylows/study/$1?format=html				False			TREEBASE							treebase	treebase					treebase					
-treefam	TreeFam	http://www.treefam.org/	TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.	^\w{1,2}\d+$	TF101014		http://www.treefam.org/family/$1				False			TREEFAM							treefam	treefam					treefam	TreeFam				
-trichdb	TrichDB	http://trichdb.org/trichdb/	TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TVAG_386080		http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TRICHDB							trichdb	trichdb										
-tritrypdb	TriTrypDB	http://tritrypdb.org/tritrypdb/	TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+(\.)?\w+(\.)?\w+$	Tb927.8.620		http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TRITRYPDB							tritrypdb	tritrypdb										
-ttd.drug	TTD Drug	http://bidd.nus.edu.sg/group/ttd/ttd.asp	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^DAP\d+$	DAP000773		http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1				False			TTD.DRUG						2653	ttd.drug	ttd.drug										
-ttd.target	TTD Target	http://bidd.nus.edu.sg/group/ttd/ttd.asp	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^TTDS\d+$	TTDS00056		http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1				False			TTD.TARGET						2654	ttd.target	ttd.target										
-tto	Teleost taxonomy ontology	https://github.com/phenoscape/teleost-taxonomy-ontology	An ontology covering the taxonomy of teleosts (bony fish)	^\d+$	1058367	balhoff@renci.org	http://purl.obolibrary.org/obo/TTO_$1				False	TTO		TTO	TTO								tto	tto	TTO		tto					
+Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."	^\d+$	98034		http://tolweb.org/$1			tol.webproj	False			TOL							tol	tol								P5221			
+topdb	Topology Data Bank of Transmembrane Proteins	http://topdb.enzim.hu/	The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.	^[A-Z0-9]+$	AP00378		http://topdb.enzim.hu/?m=show&id=$1				False			TOPDB						2789	topdb	topdb					topdb						
+topfind	TopFind	https://topfind.clip.msl.ubc.ca	TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	Q9UKQ2		http://clipserve.clip.ubc.ca/topfind/proteins/$1				False			TOPFIND							topfind	topfind						r3d100012721				uniprot	
+toxoplasma	ToxoDB	http://toxodb.org/toxo/	ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TGME49_053730		http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TOXOPLASMA							toxoplasma	toxoplasma											
+trans	Pathogen Transmission Ontology	https://github.com/DiseaseOntology/PathogenTransmissionOntology	The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.	^\d{7}$	0000024	lynn.schriml@gmail.com	http://purl.obolibrary.org/obo/TRANS_$1				False	TRANS		TRANS	TRANS								trans	trans	TRANS								
+transyt	Transport Systems Tracker	https://www.bio.di.uminho.pt/	The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.	^T[A-Z]\d{7}$	TR0000001		https://transyt.bio.di.uminho.pt/reactions/$1				False										transyt												
+treebase	TreeBASE	http://treebase.org/	TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.	^TB[1,2]?:[A-Z][a-z]?\d+$	TB2:S1000		http://purl.org/phylo/treebase/phylows/study/$1?format=html				False			TREEBASE							treebase	treebase					treebase	r3d100010170					
+treefam	TreeFam	http://www.treefam.org/	TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.	^\w{1,2}\d+$	TF101014		http://www.treefam.org/family/$1				False			TREEFAM							treefam	treefam					treefam		TreeFam				
+trichdb	TrichDB	http://trichdb.org/trichdb/	TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+$	TVAG_386080		http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TRICHDB							trichdb	trichdb						r3d100012461					
+tritrypdb	TriTrypDB	http://tritrypdb.org/tritrypdb/	TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.	^\w+(\.)?\w+(\.)?\w+$	Tb927.8.620		http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1				False			TRITRYPDB							tritrypdb	tritrypdb						r3d100011479					
+ttd.drug	TTD Drug	http://bidd.nus.edu.sg/group/ttd/ttd.asp	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^DAP\d+$	DAP000773		http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1				False			TTD.DRUG						2653	ttd.drug	ttd.drug											
+ttd.target	TTD Target	http://bidd.nus.edu.sg/group/ttd/ttd.asp	The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.	^TTDS\d+$	TTDS00056		http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1				False			TTD.TARGET						2654	ttd.target	ttd.target											
+tto	Teleost taxonomy ontology	https://github.com/phenoscape/teleost-taxonomy-ontology	An ontology covering the taxonomy of teleosts (bony fish)	^\d+$	1058367	balhoff@renci.org	http://purl.obolibrary.org/obo/TTO_$1				False	TTO		TTO	TTO								tto	tto	TTO		tto						
 txpo	Toxic Process Ontology	https://toxpilot.nibiohn.go.jp/	"Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.
 
 The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.
 
-In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"	^\d{7}$	0002066	yuki.yamagata@riken.jp	http://purl.obolibrary.org/obo/TXPO_$1				False	TXPO			TXPO								txpo	txpo	TXPO							
-uberon	Uber Anatomy Ontology	http://uberon.org	Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.	^\d+$	2005080	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/UBERON_$1		http://purl.obolibrary.org/obo/uberon/basic.obo	UBERON|Uber-anatomy ontology|Uberon	False	UBERON		UBERON	UBERON	UBERON					uberon	uberon	uberon	uberon	UBERON				P1554			
-ubio.namebank	uBio NameBank	http://www.ubio.org	"NameBank is a ""biological name server"" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."	^\d+$	2555646		http://www.ubio.org/browser/details.php?namebankID=$1				False			UBIO.NAMEBANK							ubio.namebank	ubio.namebank										
-ubprop	Uberon Property										True																					
-ucsc	UCSC Genome Browser	https://genome.ucsc.edu/	The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.		uc001rvw.5		ftp://hgdownload.cse.ucsc.edu/goldenPath/$1				False			UCSC														UCSC	P2576			
-umbbd.compound	UM-BBD Compound	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.	^c\d+$	c0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1			UM-BBD_compID	False			UMBBD.COMPOUND							umbbd.compound	umbbd.compound							P8121	umbbd		
-umbbd.enzyme	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.	^e\d+$	e0333		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1			UM-BBD_enzymeID	False			UMBBD.ENZYME							umbbd.enzyme	umbbd.enzyme								umbbd		
-umbbd.pathway	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.	^\w+$	ala		http://eawag-bbd.ethz.ch/$1/$1_map.html			UM-BBD_pathwayID	False			UMBBD.PATHWAY							umbbd.pathway	umbbd.pathway								umbbd		
-umbbd.reaction	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.	^r\d+$	r0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1			UM-BBD_reactionID	False			UMBBD.REACTION							umbbd.reaction	umbbd.reaction								umbbd		
-umbbd.rule	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.	^bt\d+$	bt0001		http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1			UM-BBD_ruleID	False			UMBBD.RULE							umbbd.rule	umbbd.rule								umbbd		
-umls	Unified Medical Language System Concept Unique Identifier	https://www.nlm.nih.gov/research/umls	The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.	^C\d+$	C2584994		http://linkedlifedata.com/resource/umls/id/$1			UMLS|UMLS CUI|UMLS_CUI|umls.cui	False			UMLS						1181	umls	umls							P2892			
-umls.aui	Unified Medical Language System Atomic Unique Identifier	https://www.nlm.nih.gov/research/umls	An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus.	^A\d+$	A0118748					UMLS_ICD9CM_2005_AUI	False																					
-unigene	UniGene	http://www.ncbi.nlm.nih.gov/unigene	A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.	^\d+$	4900		http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1				False			UNIGENE							unigene	unigene					unigene					
-unii	Unique Ingredient Identifier	http://fdasis.nlm.nih.gov/srs/	The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.	^[A-Z0-9]+$	3G6A5W338E		http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=$1				False			UNII			000563				unii	unii							P652			
-unimod	Unimod protein modification database for mass spectrometry	http://www.unimod.org/	Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).	^\d+$	1200	psidev-ms-vocab@lists.sourceforge.net	http://www.unimod.org/modifications_view.php?editid1=$1				False			UNIMOD						3757	unimod	unimod		unimod								
-uniparc	UniProt Archive	https://www.ebi.ac.uk/uniparc/	The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.	^UPI[A-F0-9]{10}$	UPI000000000A		https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1				False			UNIPARC						2392	uniparc	uniparc					uniparc					
-unipathway.compound	UniPathway Compound	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.	^UPC\d{5}$	UPC04349		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1				False			UNIPATHWAY.COMPOUND							unipathway.compound	unipathway.compound										
-unipathway.reaction	UniPathway Reaction	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.	^UCR\d{5}$	UCR00226		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1				False			UNIPATHWAY.REACTION							unipathway.reaction	unipathway.reaction										
-uniprot	UniProt Protein	http://www.uniprot.org	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	P0DP23		http://purl.uniprot.org/uniprot/$1			SwissProt|UP|UniProt|UniProtKB|Uniprot ID|uniprot/swiss-prot	False	UP		UniProtKB		UniProtKB				3021	uniprot	uniprot					uniprot		P352			
-uniprot.chain	UniProt Chain	https://www.uniprot.org	This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.	^PRO_[0-9]{10}$	PRO_0000016681		http://purl.uniprot.org/annotation/$1			UPPRO	False										uniprot.chain									uniprot		
-uniprot.disease	UniProt Diseases	https://www.uniprot.org/diseases/	The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary.	^DI-\d{5}$	DI-04240		https://www.uniprot.org/diseases/$1		https://www.uniprot.org/diseases/?query=*&format=obo	DI|SP_DI	False																			uniprot		
-uniprot.isoform	UniProt Isoform	http://www.uniprot.org/	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$	Q5BJF6-3		http://www.uniprot.org/uniprot/$1			UPISO	False			UNIPROT.ISOFORM							uniprot.isoform	uniprot.isoform								uniprot		
-uniprot.journal	UniProt journal ID	https://www.uniprot.org/journals	identifier for a scientific journal, in the UniProt database	^\d{4}$	3546		https://www.uniprot.org/journals/$1				False																		P4616			
-uniprot.keyword	UniProt Keywords	http://www.uniprot.org/keywords/	UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries.	^KW-\d{4}$	KW-1273		https://www.uniprot.org/keywords/$1		https://www.uniprot.org/keywords/?format=obo	SP_KW|UniProtKB-KW|uniprot.keyword|uniprot.kw	False																uniprot.kw			uniprot		
-uniprot.location	UniProt Subcellular Locations	https://www.uniprot.org/locations/	The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms.	^SL-\d+$	SL-0002		https://www.uniprot.org/locations/$1		https://www.uniprot.org/locations/?query=*&format=obo	SP_SL|UPLOC|UniProtKB-SubCell	False																			uniprot		
-uniprot.ptm	UniProt Post-Translational Modification	https://www.uniprot.org/docs/ptmlist	The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format	^PTM-\d{4}$	PTM-0450		https://biopragmatics.github.io/providers/uniprot.ptm/$1			PTM	False																			uniprot		
-uniprot.resource	UniProt Resource	https://www.uniprot.org/database/	The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.	^DB-\d{4}$	DB-0174		https://www.uniprot.org/database/$1				False																			uniprot		
-uniprot.tissue	Tissue List	https://www.uniprot.org/docs/tisslist.txt	The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.	^TS-\d{4}$	TS-0285		https://www.uniprot.org/tissues/$1				False			TISSUELIST							tissuelist	tissuelist								uniprot		
-uniprot.var	UniProt Variants	https://web.expasy.org/variant_pages	The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species.	^\d+$	068078		https://web.expasy.org/variant_pages/VAR_$1.html			SP_VAR|UPVAR|UniProtKB_VAR	False																			uniprot		
-uniref	UniRef	https://www.uniprot.org/	The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.	^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$	UniRef90_P00750		https://www.uniprot.org/uniref/$1				False									2346	uniref											
-unirule	UniRule	https://www.uniprot.org/unirule/	Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.		UR000124451		https://www.uniprot.org/unirule/$1				False																					
-unists	Database of Sequence Tagged Sites	https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists	UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.	^\d+$	456789		https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1				False			UNISTS						2389	unists	unists					unists					
-unite	Molecular database for the identification of fungi	http://unite.ut.ee/	UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.	^UDB\d{6}$	UDB000691		http://unite.ut.ee/bl_forw.php?nimi=$1				False			UNITE						2390	unite	unite					unite					
-unpd	Universal Natural Products Database	http://pkuxxj.pku.edu.cn/UNPD/									True																					
-uo	Units of measurement ontology	https://github.com/bio-ontology-research-group/unit-ontology	Ontology of standardized units	^\d{7}$	0000080	g.gkoutos@gmail.com	https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:$1				False	UO		UO	UO						uo	uo	uo	uo	UO		uo					
-upa	Unipathway	https://github.com/geneontology/unipathway	A manually curated resource for the representation and annotation of metabolic pathways	^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$	UCR00513	Anne.Morgat@sib.swiss	http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1		https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo	UPa|unipathway|unipathway.pathway	True	UPA		UNIPATHWAY	UPA					2645			upa	upa	UPA		unipathway	UniPathway				
-upheno	Unified Phenotype Ontology	https://github.com/obophenotype/upheno	The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.			vasilevs@ohsu.edu	http://purl.obolibrary.org/obo/UPHENO_$1	https://github.com/obophenotype/upheno/blob/master/upheno.owl			False	UPHENO		UPHENO	UPHENO								upheno	upheno	UPHENO							
-uspto	United States Patent and Trademark Office	http://patft.uspto.gov/netahtml/PTO/index.html	The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.	^(D|PP|R|T|H|X|AI)?\d+$	4145692		http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1				False			USPTO							uspto	uspto										
-validatordb	ValidatorDB	https://webchem.ncbr.muni.cz/Platform/ValidatorDb/	Database of validation results for ligands and non-standard residues in the Protein Data Bank.	^[A-Za-z0-9\/]+$	2h6o		https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1				False			VALIDATORDB							validatordb	validatordb									pdb	
-vandf	Veterans Administration National Drug File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF	The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. 	^\d+$	4019477						False	VANDF			VANDF																	
-vario	Variation Ontology	http://variationontology.org	The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.	^\d+$	0376	mauno.vihinen@med.lu.se	http://purl.obolibrary.org/obo/VARIO_$1				True	VARIO	VARIO	VARIO	VARIO						vario	vario	vario	vario	VariO							
-vbase2	Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse	http://www.vbase2.org/vbase2.php	The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.	^\w+$	humIGHV025		http://www.vbase2.org/vgene.php?id=$1				False			VBASE2							vbase2	vbase2					vbase2					
-vbrc	Viral Bioinformatics Resource Center	http://vbrc.org/	The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.	^\d+$	35742		http://vbrc.org/gene_detail.asp?gene_id=$1				False			VBRC							vbrc	vbrc					vbrc					
-vcell	VCell Published Models	https://health.uconn.edu/	Models developed with the Virtual Cell (VCell) software prorgam.	^\d{5,}$	201022999		https://vcell.org/biomodel-$1				False										vcell											
-vectorbase	Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens	https://www.vectorbase.org/	VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.	^\D{4}\d{6}(\-\D{2})?$	ISCW007415		https://vectorbase.org/vectorbase/app/record/gene/$1				False			VECTORBASE							vectorbase	vectorbase					vectorbase					
-vega	Vertebrate Genome Annotation Database	https://vega.archive.ensembl.org/index.html	A repository for high-quality gene models produced by the manual annotation of vertebrate genomes.		OTTHUMG00000169812		http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1			VEGA	False																vega					
-vegbank	VegBank	http://vegbank.org/	VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. 	^VB\.[A-Za-z][A-Za-z]\..*$	VB.Ob.3736.GRSM125		http://vegbank.org/cite/$1				False										vegbank											
-vfb	Virtual Fly Brain	https://VirtualFlyBrain.org	An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.	^[0-9a-zA-Z]{8}$	00000001		http://virtualflybrain.org/reports/$1				False										vfb	vfb										
-vfdb.gene	VFDB Gene	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.	^\w+$	VFG2154		http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1				False			VFDB.GENE							vfdb.gene	vfdb.gene										
-vfdb.genus	VFDB Genus	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.	^\w+$	Chlamydia		http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1				False			VFDB.GENUS							vfdb.genus	vfdb.genus										
-vgnc	Vertebrate Gene Nomenclature Committee	https://vertebrate.genenames.org	The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.	^((VGNC|vgnc):)?\d{1,9}$	VGNC:3792		https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1				False					VGNC					vgnc							VGNC				
-vhog	Vertebrate Homologous Organ Group Ontology			^\d{7}$	0000411		http://purl.obolibrary.org/obo/VHOG_$1		ftp://ftp.bgee.org/general/ontologies/vHOG.obo	VHOG_RETIRED	True	VHOG		VHOG	VHOG								vhog				vhog					
-viaf	Virtual International Authority File	http://viaf.org	The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.	^\d+$	75121530		http://viaf.org/viaf/$1				False										viaf	viaf										
-vido	The Virus Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-virus	The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.	^\d{7}$	0001114	johnbeverley2021@u.northwestern.edu					False	VIDO			VIDO									vido	VIDO							
-vipr	Virus Pathogen Resource	http://www.viprbrc.org/brc/home.do?decorator=vipr	The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.	^[A-Za-z 0-9]+$	BeAn 70563		http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena				False			VIPR							vipr	vipr										
-viralzone	ViralZone	http://www.expasy.org/viralzone/	ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.	^\d+$	992		http://viralzone.expasy.org/all_by_protein/$1.html				False			VIRALZONE							viralzone	viralzone										
-virsirna	VIRsiRNA	http://crdd.osdd.net/servers/virsirnadb	The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.	^virsi\d+$	virsi1909		http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1				False			VIRSIRNA							virsirna	virsirna										
-vmc	Variation Modelling Collaboration										True																					
-vmhgene	VMH Gene	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[0-9]+\.[0-9]+$	8639.1		https://www.vmh.life/#gene/$1				False										vmhgene											
-vmhmetabolite	VMH metabolite	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	h2o		https://www.vmh.life/#metabolite/$1				False			VMHMETABOLITE							vmhmetabolite	vmhmetabolite										
-vmhreaction	VMH reaction	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	HEX1		https://www.vmh.life/#reaction/$1				False			VMHREACTION							vmhreaction	vmhreaction										
-vo	Vaccine Ontology	http://www.violinet.org/vaccineontology	The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.	^\d{7}$	0000093	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/VO_$1				False	VO		VO	VO								vo	vo	VO		vo					
-void	Vocabulary of Interlinked Datasets	http://vocab.deri.ie/void	The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary.		feature		http://rdfs.org/ns/void#$1				False			void																		
-vsao	Vertebrate Skeletal Anatomy Ontology	https://www.nescent.org/phenoscape/Main_Page	Vertebrate skeletal anatomy ontology.			wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/VSAO_$1			VSAO_RETIRED	True	VSAO		VSAO	VSAO								vsao									
-vsdb	Veterinary Substances DataBase	https://sitem.herts.ac.uk/aeru/vsdb	Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.	^\d+$	1868		https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm				False																					
-vso	Vital Sign Ontology	https://bioportal.bioontology.org/ontologies/VSO	The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. 	^\d{7}$	0000041		https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1				False	VSO			VSO												vso					
-vt	Vertebrate trait ontology	https://github.com/AnimalGenome/vertebrate-trait-ontology	An ontology of traits covering vertebrates	^\d{7}$	0000685	caripark@iastate.edu	http://purl.obolibrary.org/obo/VT_$1		https://github.com/AnimalGenome/vertebrate-trait-ontology/raw/master/current_release/vt.obo		False	VT	VT	VT	VT								vt	vt	VT		vt					
-vto	Vertebrate Taxonomy Ontology	https://github.com/phenoscape/vertebrate-taxonomy-ontology	Comprehensive hierarchy of extinct and extant vertebrate taxa.	^\d{7}$	9008500	balhoff@renci.org	http://purl.obolibrary.org/obo/VTO_$1				False	VTO		VTO	VTO								vto	vto	VTO							
-vuid	Veterans Health Administration (VHA) unique identifier	https://www.va.gov/health	The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.	^\d+$	4007166						False																					
-vz	ViralZone	http://viralzone.expasy.org/	ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries.	^\d+$	886		https://viralzone.expasy.org/$1				False																vz					
-wb.rnai	WormBase RNAi	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.	^WBRNAi\d{8}$	WBRNAi00086878		https://www.wormbase.org/species/c_elegans/rnai/$1				False			WB.RNAI							wb.rnai	wb.rnai										
-wbbt	C. elegans Gross Anatomy Ontology	https://github.com/obophenotype/c-elegans-gross-anatomy-ontology	Ontology about the gross anatomy of the C. elegans	^\d{7}$	0001290	raymond@caltech.edu	http://purl.obolibrary.org/obo/WBbt_$1			WBbt	False	WBBT		WBbt	WB-BT								wbbt	wbbt	WBbt		wbbt					
-wbls	C. elegans development ontology	https://github.com/obophenotype/c-elegans-development-ontology	Ontology about the development and life stages of the C. elegans	^\d{7}$	0000690	cgrove@caltech.edu	http://www.wormbase.org/get?name=$1			WBls	False	WBLS		WBLS	WB-LS								wbls	wbls	WBLS		wbls			wormbase		
-wbphenotype	C. elegans phenotype	https://github.com/obophenotype/c-elegans-phenotype-ontology	Ontology about C. elegans and other nematode phenotypes	^\d{7}$	0000983	cgrove@caltech.edu	http://www.wormbase.org/get?name=$1			WBPhenotype	False	WBPHENOTYPE		WBPhenotype	WB-PHENOTYPE								wbphenotype	wbphenotype	WBPhenotype		wbphenotype			wormbase		
-webelements	Web Elements	https://www.webelements.com/	Browser for the periodic table of the elements	^\w+$	chromium		https://www.webelements.com/$1				False																					
-wgs84	WGS84 Geo Positioning	https://www.w3.org/2003/01/geo/wgs84_pos	A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum		latitude		http://www.w3.org/2003/01/geo/wgs84_pos#$1				False																					
-wicell	WiCell Research Institute Cell Collection	https://www.wicell.org	Cell line collections		ai10e-kctd13b		https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true				False					WiCell																
-wikidata	Wikidata	https://www.wikidata.org/	Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.	^(Q|P)\d+$	Q2207226		http://www.wikidata.org/entity/$1			WD_Entity|wd	False			WIKIDATA		Wikidata	000567				wikidata	wikidata										
+In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"	^\d{7}$	0002066	yuki.yamagata@riken.jp	http://purl.obolibrary.org/obo/TXPO_$1				False	TXPO			TXPO								txpo	txpo	TXPO								
+uberon	Uber Anatomy Ontology	http://uberon.org	Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.	^\d+$	2005080	cjmungall@lbl.gov	http://purl.obolibrary.org/obo/UBERON_$1		http://purl.obolibrary.org/obo/uberon/basic.obo	UBERON|Uber-anatomy ontology|Uberon	False	UBERON		UBERON	UBERON	UBERON					uberon	uberon	uberon	uberon	UBERON					P1554			
+ubio.namebank	uBio NameBank	http://www.ubio.org	"NameBank is a ""biological name server"" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."	^\d+$	2555646		http://www.ubio.org/browser/details.php?namebankID=$1				False			UBIO.NAMEBANK							ubio.namebank	ubio.namebank											
+ubprop	Uberon Property										True																						
+ucsc	UCSC Genome Browser	https://genome.ucsc.edu/	The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.		uc001rvw.5		ftp://hgdownload.cse.ucsc.edu/goldenPath/$1				False			UCSC															UCSC	P2576			
+umbbd.compound	UM-BBD Compound	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.	^c\d+$	c0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1			UM-BBD_compID	False			UMBBD.COMPOUND							umbbd.compound	umbbd.compound								P8121	umbbd		
+umbbd.enzyme	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.	^e\d+$	e0333		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1			UM-BBD_enzymeID	False			UMBBD.ENZYME							umbbd.enzyme	umbbd.enzyme									umbbd		
+umbbd.pathway	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.	^\w+$	ala		http://eawag-bbd.ethz.ch/$1/$1_map.html			UM-BBD_pathwayID	False			UMBBD.PATHWAY							umbbd.pathway	umbbd.pathway									umbbd		
+umbbd.reaction	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.	^r\d+$	r0001		http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1			UM-BBD_reactionID	False			UMBBD.REACTION							umbbd.reaction	umbbd.reaction									umbbd		
+umbbd.rule	EAWAG Biocatalysis/Biodegradation Database	http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules	The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.	^bt\d+$	bt0001		http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1			UM-BBD_ruleID	False			UMBBD.RULE							umbbd.rule	umbbd.rule									umbbd		
+umls	Unified Medical Language System Concept Unique Identifier	https://www.nlm.nih.gov/research/umls	The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.	^C\d+$	C2584994		http://linkedlifedata.com/resource/umls/id/$1			UMLS|UMLS CUI|UMLS_CUI|umls.cui	False			UMLS						1181	umls	umls								P2892			
+umls.aui	Unified Medical Language System Atomic Unique Identifier	https://www.nlm.nih.gov/research/umls	An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus.	^A\d+$	A0118748					UMLS_ICD9CM_2005_AUI	False																						
+unigene	UniGene	http://www.ncbi.nlm.nih.gov/unigene	A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.	^\d+$	4900		http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1				False			UNIGENE							unigene	unigene					unigene	r3d100010774					
+unii	Unique Ingredient Identifier	http://fdasis.nlm.nih.gov/srs/	The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.	^[A-Z0-9]+$	3G6A5W338E		http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=$1				False			UNII			000563				unii	unii								P652			
+unimod	Unimod protein modification database for mass spectrometry	http://www.unimod.org/	Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).	^\d+$	1200	psidev-ms-vocab@lists.sourceforge.net	http://www.unimod.org/modifications_view.php?editid1=$1				False			UNIMOD						3757	unimod	unimod		unimod									
+uniparc	UniProt Archive	https://www.ebi.ac.uk/uniparc/	The UniProt Archive (UniParc) is a  database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.	^UPI[A-F0-9]{10}$	UPI000000000A		https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1				False			UNIPARC						2392	uniparc	uniparc					uniparc	r3d100011519					
+unipathway.compound	UniPathway Compound	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.	^UPC\d{5}$	UPC04349		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1				False			UNIPATHWAY.COMPOUND							unipathway.compound	unipathway.compound											
+unipathway.reaction	UniPathway Reaction	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.	^UCR\d{5}$	UCR00226		http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1				False			UNIPATHWAY.REACTION							unipathway.reaction	unipathway.reaction											
+uniprot	UniProt Protein	http://www.uniprot.org	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.	^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	P0DP23		http://purl.uniprot.org/uniprot/$1			SwissProt|UP|UniProt|UniProtKB|Uniprot ID|uniprot/swiss-prot	False	UP		UniProtKB		UniProtKB				3021	uniprot	uniprot					uniprot	r3d100011521		P352			
+uniprot.chain	UniProt Chain	https://www.uniprot.org	This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.	^PRO_[0-9]{10}$	PRO_0000016681		http://purl.uniprot.org/annotation/$1			UPPRO	False										uniprot.chain										uniprot		
+uniprot.disease	UniProt Diseases	https://www.uniprot.org/diseases/	The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary.	^DI-\d{5}$	DI-04240		https://www.uniprot.org/diseases/$1		https://www.uniprot.org/diseases/?query=*&format=obo	DI|SP_DI	False																				uniprot		
+uniprot.isoform	UniProt Isoform	http://www.uniprot.org/	The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$	Q5BJF6-3		http://www.uniprot.org/uniprot/$1			UPISO	False			UNIPROT.ISOFORM							uniprot.isoform	uniprot.isoform									uniprot		
+uniprot.journal	UniProt journal ID	https://www.uniprot.org/journals	identifier for a scientific journal, in the UniProt database	^\d{4}$	3546		https://www.uniprot.org/journals/$1				False																			P4616			
+uniprot.keyword	UniProt Keywords	http://www.uniprot.org/keywords/	UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries.	^KW-\d{4}$	KW-1273		https://www.uniprot.org/keywords/$1		https://www.uniprot.org/keywords/?format=obo	SP_KW|UniProtKB-KW|uniprot.keyword|uniprot.kw	False																uniprot.kw				uniprot		
+uniprot.location	UniProt Subcellular Locations	https://www.uniprot.org/locations/	The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms.	^SL-\d+$	SL-0002		https://www.uniprot.org/locations/$1		https://www.uniprot.org/locations/?query=*&format=obo	SP_SL|UPLOC|UniProtKB-SubCell	False																				uniprot		
+uniprot.ptm	UniProt Post-Translational Modification	https://www.uniprot.org/docs/ptmlist	The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format	^PTM-\d{4}$	PTM-0450		https://biopragmatics.github.io/providers/uniprot.ptm/$1			PTM	False																				uniprot		
+uniprot.resource	UniProt Resource	https://www.uniprot.org/database/	The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.	^DB-\d{4}$	DB-0174		https://www.uniprot.org/database/$1				False																				uniprot		
+uniprot.tissue	Tissue List	https://www.uniprot.org/docs/tisslist.txt	The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.	^TS-\d{4}$	TS-0285		https://www.uniprot.org/tissues/$1				False			TISSUELIST							tissuelist	tissuelist									uniprot		
+uniprot.var	UniProt Variants	https://web.expasy.org/variant_pages	The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species.	^\d+$	068078		https://web.expasy.org/variant_pages/VAR_$1.html			SP_VAR|UPVAR|UniProtKB_VAR	False																				uniprot		
+uniref	UniRef	https://www.uniprot.org/	The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.	^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$	UniRef90_P00750		https://www.uniprot.org/uniref/$1				False									2346	uniref							r3d100011518					
+unirule	UniRule	https://www.uniprot.org/unirule/	Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.		UR000124451		https://www.uniprot.org/unirule/$1				False																						
+unists	Database of Sequence Tagged Sites	https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists	UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.	^\d+$	456789		https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1				False			UNISTS						2389	unists	unists					unists						
+unite	Molecular database for the identification of fungi	http://unite.ut.ee/	UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.	^UDB\d{6}$	UDB000691		http://unite.ut.ee/bl_forw.php?nimi=$1				False			UNITE						2390	unite	unite					unite	r3d100011316					
+unpd	Universal Natural Products Database	http://pkuxxj.pku.edu.cn/UNPD/									True																						
+uo	Units of measurement ontology	https://github.com/bio-ontology-research-group/unit-ontology	Ontology of standardized units	^\d{7}$	0000080	g.gkoutos@gmail.com	https://www.ebi.ac.uk/ols/ontologies/uo/terms?obo_id=UO:$1				False	UO		UO	UO						uo	uo	uo	uo	UO		uo						
+upa	Unipathway	https://github.com/geneontology/unipathway	A manually curated resource for the representation and annotation of metabolic pathways	^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$	UCR00513	Anne.Morgat@sib.swiss	http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1		https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo	UPa|unipathway|unipathway.pathway	True	UPA		UNIPATHWAY	UPA					2645			upa	upa	UPA		unipathway		UniPathway				
+upheno	Unified Phenotype Ontology	https://github.com/obophenotype/upheno	The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.			vasilevs@ohsu.edu	http://purl.obolibrary.org/obo/UPHENO_$1	https://github.com/obophenotype/upheno/blob/master/upheno.owl			False	UPHENO		UPHENO	UPHENO								upheno	upheno	UPHENO								
+uspto	United States Patent and Trademark Office	http://patft.uspto.gov/netahtml/PTO/index.html	The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.	^(D|PP|R|T|H|X|AI)?\d+$	4145692		http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1				False			USPTO							uspto	uspto											
+validatordb	ValidatorDB	https://webchem.ncbr.muni.cz/Platform/ValidatorDb/	Database of validation results for ligands and non-standard residues in the Protein Data Bank.	^[A-Za-z0-9\/]+$	2h6o		https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1				False			VALIDATORDB							validatordb	validatordb										pdb	
+vandf	Veterans Administration National Drug File	https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF	The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. 	^\d+$	4019477						False	VANDF			VANDF																		
+vario	Variation Ontology	http://variationontology.org	The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.	^\d+$	0376	mauno.vihinen@med.lu.se	http://purl.obolibrary.org/obo/VARIO_$1				True	VARIO	VARIO	VARIO	VARIO						vario	vario	vario	vario	VariO								
+vbase2	Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse	http://www.vbase2.org/vbase2.php	The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.	^\w+$	humIGHV025		http://www.vbase2.org/vgene.php?id=$1				False			VBASE2							vbase2	vbase2					vbase2						
+vbrc	Viral Bioinformatics Resource Center	http://vbrc.org/	The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.	^\d+$	35742		http://vbrc.org/gene_detail.asp?gene_id=$1				False			VBRC							vbrc	vbrc					vbrc						
+vcell	VCell Published Models	https://health.uconn.edu/	Models developed with the Virtual Cell (VCell) software prorgam.	^\d{5,}$	201022999		https://vcell.org/biomodel-$1				False										vcell												
+vectorbase	Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens	https://www.vectorbase.org/	VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.	^\D{4}\d{6}(\-\D{2})?$	ISCW007415		https://vectorbase.org/vectorbase/app/record/gene/$1				False			VECTORBASE							vectorbase	vectorbase					vectorbase	r3d100010880					
+vega	Vertebrate Genome Annotation Database	https://vega.archive.ensembl.org/index.html	A repository for high-quality gene models produced by the manual annotation of vertebrate genomes.		OTTHUMG00000169812		http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1			VEGA	False																vega	r3d100012575					
+vegbank	VegBank	http://vegbank.org/	VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. 	^VB\.[A-Za-z][A-Za-z]\..*$	VB.Ob.3736.GRSM125		http://vegbank.org/cite/$1				False										vegbank							r3d100010153					
+vfb	Virtual Fly Brain	https://VirtualFlyBrain.org	An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.	^[0-9a-zA-Z]{8}$	00000001		http://virtualflybrain.org/reports/$1				False										vfb	vfb											
+vfdb.gene	VFDB Gene	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.	^\w+$	VFG2154		http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1				False			VFDB.GENE							vfdb.gene	vfdb.gene											
+vfdb.genus	VFDB Genus	http://www.mgc.ac.cn/VFs/	VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.	^\w+$	Chlamydia		http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1				False			VFDB.GENUS							vfdb.genus	vfdb.genus											
+vgnc	Vertebrate Gene Nomenclature Committee	https://vertebrate.genenames.org	The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.	^((VGNC|vgnc):)?\d{1,9}$	VGNC:3792		https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1				False					VGNC					vgnc								VGNC				
+vhog	Vertebrate Homologous Organ Group Ontology			^\d{7}$	0000411		http://purl.obolibrary.org/obo/VHOG_$1		ftp://ftp.bgee.org/general/ontologies/vHOG.obo	VHOG_RETIRED	True	VHOG		VHOG	VHOG								vhog				vhog						
+viaf	Virtual International Authority File	http://viaf.org	The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.	^\d+$	75121530		http://viaf.org/viaf/$1				False										viaf	viaf											
+vido	The Virus Infectious Disease Ontology	https://github.com/infectious-disease-ontology-extensions/ido-virus	The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.	^\d{7}$	0001114	johnbeverley2021@u.northwestern.edu					False	VIDO			VIDO									vido	VIDO								
+vipr	Virus Pathogen Resource	http://www.viprbrc.org/brc/home.do?decorator=vipr	The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures,  and host factor data. This collection references viral strain information.	^[A-Za-z 0-9]+$	BeAn 70563		http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena				False			VIPR							vipr	vipr											
+viralzone	ViralZone	http://www.expasy.org/viralzone/	ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.	^\d+$	992		http://viralzone.expasy.org/all_by_protein/$1.html				False			VIRALZONE							viralzone	viralzone						r3d100013314					
+virsirna	VIRsiRNA	http://crdd.osdd.net/servers/virsirnadb	The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.	^virsi\d+$	virsi1909		http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1				False			VIRSIRNA							virsirna	virsirna											
+vmc	Variation Modelling Collaboration										True																						
+vmhgene	VMH Gene	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[0-9]+\.[0-9]+$	8639.1		https://www.vmh.life/#gene/$1				False										vmhgene												
+vmhmetabolite	VMH metabolite	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	h2o		https://www.vmh.life/#metabolite/$1				False			VMHMETABOLITE							vmhmetabolite	vmhmetabolite											
+vmhreaction	VMH reaction	https://www.vmh.life/	The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.	^[a-zA-Z0-9_\(\_\)\[\]]+$	HEX1		https://www.vmh.life/#reaction/$1				False			VMHREACTION							vmhreaction	vmhreaction											
+vo	Vaccine Ontology	http://www.violinet.org/vaccineontology	The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.	^\d{7}$	0000093	yongqunh@med.umich.edu	http://purl.obolibrary.org/obo/VO_$1				False	VO		VO	VO								vo	vo	VO		vo						
+void	Vocabulary of Interlinked Datasets	http://vocab.deri.ie/void	The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary.		feature		http://rdfs.org/ns/void#$1				False			void																			
+vsao	Vertebrate Skeletal Anatomy Ontology	https://www.nescent.org/phenoscape/Main_Page	Vertebrate skeletal anatomy ontology.			wasila.dahdul@usd.edu	http://purl.obolibrary.org/obo/VSAO_$1			VSAO_RETIRED	True	VSAO		VSAO	VSAO								vsao										
+vsdb	Veterinary Substances DataBase	https://sitem.herts.ac.uk/aeru/vsdb	Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.	^\d+$	1868		https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm				False																						
+vso	Vital Sign Ontology	https://bioportal.bioontology.org/ontologies/VSO	The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. 	^\d{7}$	0000041		https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1				False	VSO			VSO												vso						
+vt	Vertebrate trait ontology	https://github.com/AnimalGenome/vertebrate-trait-ontology	An ontology of traits covering vertebrates	^\d{7}$	0000685	caripark@iastate.edu	http://purl.obolibrary.org/obo/VT_$1		https://github.com/AnimalGenome/vertebrate-trait-ontology/raw/master/current_release/vt.obo		False	VT	VT	VT	VT								vt	vt	VT		vt						
+vto	Vertebrate Taxonomy Ontology	https://github.com/phenoscape/vertebrate-taxonomy-ontology	Comprehensive hierarchy of extinct and extant vertebrate taxa.	^\d{7}$	9008500	balhoff@renci.org	http://purl.obolibrary.org/obo/VTO_$1				False	VTO		VTO	VTO								vto	vto	VTO								
+vuid	Veterans Health Administration (VHA) unique identifier	https://www.va.gov/health	The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.	^\d+$	4007166						False																						
+vz	ViralZone	http://viralzone.expasy.org/	ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries.	^\d+$	886		https://viralzone.expasy.org/$1				False																vz						
+wb.rnai	WormBase RNAi	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.	^WBRNAi\d{8}$	WBRNAi00086878		https://www.wormbase.org/species/c_elegans/rnai/$1				False			WB.RNAI							wb.rnai	wb.rnai											
+wbbt	C. elegans Gross Anatomy Ontology	https://github.com/obophenotype/c-elegans-gross-anatomy-ontology	Ontology about the gross anatomy of the C. elegans	^\d{7}$	0001290	raymond@caltech.edu	http://purl.obolibrary.org/obo/WBbt_$1			WBbt	False	WBBT		WBbt	WB-BT								wbbt	wbbt	WBbt		wbbt						
+wbls	C. elegans development ontology	https://github.com/obophenotype/c-elegans-development-ontology	Ontology about the development and life stages of the C. elegans	^\d{7}$	0000690	cgrove@caltech.edu	http://www.wormbase.org/get?name=$1			WBls	False	WBLS		WBLS	WB-LS								wbls	wbls	WBLS		wbls				wormbase		
+wbphenotype	C. elegans phenotype	https://github.com/obophenotype/c-elegans-phenotype-ontology	Ontology about C. elegans and other nematode phenotypes	^\d{7}$	0000983	cgrove@caltech.edu	http://www.wormbase.org/get?name=$1			WBPhenotype	False	WBPHENOTYPE		WBPhenotype	WB-PHENOTYPE								wbphenotype	wbphenotype	WBPhenotype		wbphenotype				wormbase		
+webelements	Web Elements	https://www.webelements.com/	Browser for the periodic table of the elements	^\w+$	chromium		https://www.webelements.com/$1				False																						
+wgs84	WGS84 Geo Positioning	https://www.w3.org/2003/01/geo/wgs84_pos	A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum		latitude		http://www.w3.org/2003/01/geo/wgs84_pos#$1				False																						
+wicell	WiCell Research Institute Cell Collection	https://www.wicell.org	Cell line collections		ai10e-kctd13b		https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true				False					WiCell																	
+wikidata	Wikidata	https://www.wikidata.org/	Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.	^(Q|P)\d+$	Q2207226		http://www.wikidata.org/entity/$1			WD_Entity|wd	False			WIKIDATA		Wikidata	000567				wikidata	wikidata											
 wikidata.property	Wikidata Property	https://www.wikidata.org	"Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.
-Wikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. "	^P\d+$	P4355		https://www.wikidata.org/wiki/Property:$1				False			WD_Prop																		
-wikigenes	WikiGenes	http://www.wikigenes.org/	WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.	^\d+$	3771877		http://www.wikigenes.org/e/gene/e/$1.html				False			WIKIGENES							wikigenes	wikigenes									ncbigene	
+Wikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. "	^P\d+$	P4355		https://www.wikidata.org/wiki/Property:$1				False			WD_Prop																			
+wikigenes	WikiGenes	http://www.wikigenes.org/	WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.	^\d+$	3771877		http://www.wikigenes.org/e/gene/e/$1.html				False			WIKIGENES							wikigenes	wikigenes										ncbigene	
 wikipathways	WikiPathways	http://www.wikipathways.org/	"WikiPathways is a resource providing an open and public collection of  pathway maps created and curated by the community in a Wiki like style.
-All content is under the Creative Commons Attribution 3.0 Unported license."	^WP\d{1,5}(\_r\d+)?$	WP732		http://www.wikipathways.org/instance/$1				False	WIKIPATHWAYS		WIKIPATHWAYS	WIKIPATHWAYS					3952	wikipathways	wikipathways					wikipathways		P2410			
-wikipedia.en	Wikipedia	http://en.wikipedia.org/wiki/Main_Page	Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.	^[A-Za-z-0-9_]+$	SM_UB-81		http://en.wikipedia.org/wiki/$1			wikipedia	False			WIKIPEDIA.EN							wikipedia.en	wikipedia.en					wikipedia					
-worfdb	C. elegans ORFeome cloning project	http://worfdb.dfci.harvard.edu/	WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).	^\w+(\.\d+)$	T01B6.1		http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1				False			WORFDB							worfdb	worfdb					worfdb					
-wormbase	WormBase database of nematode biology	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.	^WB[A-Z][a-z]+\d+$	WBGene00000001		https://www.wormbase.org/get?name=$1			WB_REF|wb|wormbase	False			WormBase						1805	wb	wb					wormbase	WormBase	P3860			
-wormpep	Wormpep	https://www.wormbase.org/db/seq/protein	Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.	^CE\d{5}$	CE28239		https://www.wormbase.org/db/seq/protein?name=$1				False			WORMPEP							wormpep	wormpep					wormpep					
-worms	World Register of Marine Species	http://www.marinespecies.org/	The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.	^\d+$	146421		http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1				False			WORMS							worms	worms							P850			
-wwf.ecoregion	World Wildlife Fund Ecoregion	https://www.worldwildlife.org/biomes	WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.	^AT\d+$	AT1402		https://www.worldwildlife.org/ecoregions/$1			WWF	False																		P1294			
-xao	Xenopus Anatomy Ontology	http://www.xenbase.org/anatomy/xao.do?method=display	XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.	^\d{7}$	0004486	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XAO_$1				False	XAO		XAO	XAO								xao	xao	XAO				P4495			
-xco	Experimental condition ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000	Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.	^\d{7}$	0000780	jrsmith@mcw.edu	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:$1				False	XCO		XCO	XCO								xco	xco	XCO		xco					
-xenbase	Xenbase	https://www.xenbase.org/	Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.	^XB\-\w+\-\d+$	XB-GENE-922462	troy_pells@yahoo.ca	https://www.xenbase.org/entry/$1			Xenbase	False			Xenbase						2738	xenbase	xenbase					xenbase	Xenbase				
-ximbio	Ximbio	https://ximbio.com	Cell line collections	^\d+$	151022		https://ximbio.com/reagent/$1				False					Ximbio																
-xl	Cross-linker reagents ontology	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.			psidev-ms-vocab@lists.sourceforge.net	http://purl.obolibrary.org/obo/XL_$1				True	XL		XL										xl	XL							
-xlmod	HUPO-PSI cross-linking and derivatization reagents controlled vocabulary	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.	^\d{5}$	00050	lutz.fischer@tu-berlin.de	http://purl.obolibrary.org/obo/XLMOD_$1		https://raw.githubusercontent.com/HUPO-PSI/mzIdentML/master/cv/XLMOD.obo		False	XLMOD			XLMOD								xlmod	xlmod	XLMOD							
-xmetdb	Xenobiotics Metabolism Database	https://xmetdb.org	Metabolites in the Xenobiotics Metabolism Database.	^\d+$	171		http://www.xmetdb.org/xmetdb/protocol/$1				True																					
-xml	Extensible Markup Language	https://www.w3.org/TR/xml/	The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.		lang		http://www.w3.org/XML/1998/namespace#$1				False			xml																		
-xpo	Xenopus Phenotype Ontology	https://github.com/obophenotype/xenopus-phenotype-ontology	XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.	^\d+$	0100002	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XPO_$1				False	XPO			XPO								xpo	xpo	XPO							
-xsd	XML Schema Definition	http://www.w3.org/2001/XMLSchema	This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.		decimal		http://www.w3.org/2001/XMLSchema#$1				False			xsd																		
-xuo	XUO										True																					
-ydpm	Yeast Deletion and the Mitochondrial Proteomics Project	http://www-deletion.stanford.edu/YDPM/	The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.	^Y[A-Z]{2}\d+[CW]$	YAL001C		http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1				False			YDPM							ydpm	ydpm					ydpm					
-yeastintron	Yeast Intron Database v4.3	http://intron.ucsc.edu/yeast4.3/	The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].	^[A-Z0-9]+$	SNR17A		http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1				False			YEASTINTRON							yeastintron	yeastintron										
-yetfasco	YeTFasCo	http://yetfasco.ccbr.utoronto.ca/	The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.	^\w+\_\d+(\.\d+)?$	YOR172W_571.0		http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1				False			YETFASCO							yetfasco	yetfasco										
-yid	Yeast Intron Database v3	http://compbio.soe.ucsc.edu/yeast_introns.html	The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].	^[A-Z0-9]+$	SNR17A		http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1				False			YID							yid	yid										
-ymdb	Yeast Metabolome Database	http://www.ymdb.ca	The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).	^YMDB\d+$	YMDB00001		http://www.ymdb.ca/compounds/$1				False																					
-ypo	Yeast phenotypes	http://www.yeastgenome.org/				cherry@genome.stanford.edu					True												ypo	ypo								
-yrcpdr	YRC PDR	http://www.yeastrc.org/pdr/	The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.	^\d+$	2673500		http://yeastrc.org/pdr/viewProtein.do?id=$1				False			YRCPDR							yrcpdr	yrcpdr										
-zea	Maize gross anatomy	http://www.maizemap.org/				Leszek@missouri.edu	http://purl.obolibrary.org/obo/ZEA_$1				True	ZEA		ZEA	ZEA								zea				zea					
-zeco	Zebrafish Experimental Conditions Ontology	https://github.com/ybradford/zebrafish-experimental-conditions-ontology	Ontology of Zebrafish Experimental Conditions	^\d{7}$	0000171	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZECO_$1				False	ZECO		ZECO	ZECO								zeco	zeco	ZECO							
-zenodo.record	Zenodo	https://zenodo.org	Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.	^\d+$	4390079		https://zenodo.org/record/$1			zenodo	False																		P4901			
-zfa	Zebrafish anatomy and development ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	ZFA description.	^\d{7}$	0005926	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFA_$1			ZFA_RETIRED	False	ZFA		ZFA	ZFA								zfa	zfa	ZFA		zfa					
-zfin	Zebrafish Information Network Gene	http://zfin.org	ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.	^ZDB\-\w+\-\d+\-\d+$	ZDB-GENE-041118-11		http://zfin.org/$1			ZFIN	False			ZFIN							zfin	zfin					zfin	ZFIN	P3870			
-zfs	Zebrafish developmental stages ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	Developmental stages of the Zebrafish	^\d{7}$	0000050	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFS_$1				False	ZFS		ZFS	ZFS								zfs	zfs	ZFS							
-zinc	ZINC is not Commercial	http://zinc15.docking.org/	ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.	^(ZINC)?\d+$	ZINC1084		http://zinc15.docking.org/substances/$1				False			ZINC							zinc	zinc							P2084			
-zp	Zebrafish Phenotype Ontology	https://github.com/obophenotype/zebrafish-phenotype-ontology	The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.	^\d+$	0019030	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZP_$1				False	ZP		ZP	ZP								zp	zp	ZP							
+All content is under the Creative Commons Attribution 3.0 Unported license."	^WP\d{1,5}(\_r\d+)?$	WP732		http://www.wikipathways.org/instance/$1				False	WIKIPATHWAYS		WIKIPATHWAYS	WIKIPATHWAYS					3952	wikipathways	wikipathways					wikipathways	r3d100013316		P2410			
+wikipedia.en	Wikipedia	http://en.wikipedia.org/wiki/Main_Page	Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.	^[A-Za-z-0-9_]+$	SM_UB-81		http://en.wikipedia.org/wiki/$1			wikipedia	False			WIKIPEDIA.EN							wikipedia.en	wikipedia.en					wikipedia						
+worfdb	C. elegans ORFeome cloning project	http://worfdb.dfci.harvard.edu/	WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).	^\w+(\.\d+)$	T01B6.1		http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1				False			WORFDB							worfdb	worfdb					worfdb						
+wormbase	WormBase database of nematode biology	https://www.wormbase.org/	WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.	^WB[A-Z][a-z]+\d+$	WBGene00000001		https://www.wormbase.org/get?name=$1			WB_REF|wb|wormbase	False			WormBase						1805	wb	wb					wormbase	r3d100010424	WormBase	P3860			
+wormpep	Wormpep	https://www.wormbase.org/db/seq/protein	Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.	^CE\d{5}$	CE28239		https://www.wormbase.org/db/seq/protein?name=$1				False			WORMPEP							wormpep	wormpep					wormpep						
+worms	World Register of Marine Species	http://www.marinespecies.org/	The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.	^\d+$	146421		http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1				False			WORMS							worms	worms								P850			
+wwf.ecoregion	World Wildlife Fund Ecoregion	https://www.worldwildlife.org/biomes	WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.	^AT\d+$	AT1402		https://www.worldwildlife.org/ecoregions/$1			WWF	False																			P1294			
+xao	Xenopus Anatomy Ontology	http://www.xenbase.org/anatomy/xao.do?method=display	XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.	^\d{7}$	0004486	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XAO_$1				False	XAO		XAO	XAO								xao	xao	XAO					P4495			
+xco	Experimental condition ontology	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000	Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.	^\d{7}$	0000780	jrsmith@mcw.edu	https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:$1				False	XCO		XCO	XCO								xco	xco	XCO		xco						
+xenbase	Xenbase	https://www.xenbase.org/	Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.	^XB\-\w+\-\d+$	XB-GENE-922462	troy_pells@yahoo.ca	https://www.xenbase.org/entry/$1			Xenbase	False			Xenbase						2738	xenbase	xenbase					xenbase	r3d100011331	Xenbase				
+ximbio	Ximbio	https://ximbio.com	Cell line collections	^\d+$	151022		https://ximbio.com/reagent/$1				False					Ximbio																	
+xl	Cross-linker reagents ontology	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.			psidev-ms-vocab@lists.sourceforge.net	http://purl.obolibrary.org/obo/XL_$1				True	XL		XL										xl	XL								
+xlmod	HUPO-PSI cross-linking and derivatization reagents controlled vocabulary	http://www.psidev.info/groups/controlled-vocabularies	A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.	^\d{5}$	00050	lutz.fischer@tu-berlin.de	http://purl.obolibrary.org/obo/XLMOD_$1		https://raw.githubusercontent.com/HUPO-PSI/mzIdentML/master/cv/XLMOD.obo		False	XLMOD			XLMOD								xlmod	xlmod	XLMOD								
+xmetdb	Xenobiotics Metabolism Database	https://xmetdb.org	Metabolites in the Xenobiotics Metabolism Database.	^\d+$	171		http://www.xmetdb.org/xmetdb/protocol/$1				True																						
+xml	Extensible Markup Language	https://www.w3.org/TR/xml/	The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.		lang		http://www.w3.org/XML/1998/namespace#$1				False			xml																			
+xpo	Xenopus Phenotype Ontology	https://github.com/obophenotype/xenopus-phenotype-ontology	XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.	^\d+$	0100002	Erik.Segerdell@cchmc.org	http://purl.obolibrary.org/obo/XPO_$1				False	XPO			XPO								xpo	xpo	XPO								
+xsd	XML Schema Definition	http://www.w3.org/2001/XMLSchema	This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.		decimal		http://www.w3.org/2001/XMLSchema#$1				False			xsd																			
+xuo	XUO										True																						
+ydpm	Yeast Deletion and the Mitochondrial Proteomics Project	http://www-deletion.stanford.edu/YDPM/	The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.	^Y[A-Z]{2}\d+[CW]$	YAL001C		http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1				False			YDPM							ydpm	ydpm					ydpm						
+yeastintron	Yeast Intron Database v4.3	http://intron.ucsc.edu/yeast4.3/	The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].	^[A-Z0-9]+$	SNR17A		http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName=$1				False			YEASTINTRON							yeastintron	yeastintron											
+yetfasco	YeTFasCo	http://yetfasco.ccbr.utoronto.ca/	The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.	^\w+\_\d+(\.\d+)?$	YOR172W_571.0		http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1				False			YETFASCO							yetfasco	yetfasco											
+yid	Yeast Intron Database v3	http://compbio.soe.ucsc.edu/yeast_introns.html	The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].	^[A-Z0-9]+$	SNR17A		http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1				False			YID							yid	yid											
+ymdb	Yeast Metabolome Database	http://www.ymdb.ca	The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).	^YMDB\d+$	YMDB00001		http://www.ymdb.ca/compounds/$1				False																						
+ypo	Yeast phenotypes	http://www.yeastgenome.org/				cherry@genome.stanford.edu					True												ypo	ypo									
+yrcpdr	YRC PDR	http://www.yeastrc.org/pdr/	The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.	^\d+$	2673500		http://yeastrc.org/pdr/viewProtein.do?id=$1				False			YRCPDR							yrcpdr	yrcpdr											
+zea	Maize gross anatomy	http://www.maizemap.org/				Leszek@missouri.edu	http://purl.obolibrary.org/obo/ZEA_$1				True	ZEA		ZEA	ZEA								zea				zea						
+zeco	Zebrafish Experimental Conditions Ontology	https://github.com/ybradford/zebrafish-experimental-conditions-ontology	Ontology of Zebrafish Experimental Conditions	^\d{7}$	0000171	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZECO_$1				False	ZECO		ZECO	ZECO								zeco	zeco	ZECO								
+zenodo.record	Zenodo	https://zenodo.org	Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.	^\d+$	4390079		https://zenodo.org/record/$1			zenodo	False																	r3d100010468		P4901			
+zfa	Zebrafish anatomy and development ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	ZFA description.	^\d{7}$	0005926	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFA_$1			ZFA_RETIRED	False	ZFA		ZFA	ZFA								zfa	zfa	ZFA		zfa						
+zfin	Zebrafish Information Network Gene	http://zfin.org	ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.	^ZDB\-\w+\-\d+\-\d+$	ZDB-GENE-041118-11		http://zfin.org/$1			ZFIN	False			ZFIN							zfin	zfin					zfin		ZFIN	P3870			
+zfs	Zebrafish developmental stages ontology	https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources	Developmental stages of the Zebrafish	^\d{7}$	0000050	van_slyke@zfin.org	http://purl.obolibrary.org/obo/ZFS_$1				False	ZFS		ZFS	ZFS								zfs	zfs	ZFS								
+zinc	ZINC is not Commercial	http://zinc15.docking.org/	ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.	^(ZINC)?\d+$	ZINC1084		http://zinc15.docking.org/substances/$1				False			ZINC							zinc	zinc						r3d100010372		P2084			
+zp	Zebrafish Phenotype Ontology	https://github.com/obophenotype/zebrafish-phenotype-ontology	The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.	^\d+$	0019030	ybradford@zfin.org	http://purl.obolibrary.org/obo/ZP_$1				False	ZP		ZP	ZP								zp	zp	ZP								
diff --git a/exports/registry/registry.yml b/exports/registry/registry.yml
index 780486fe8..f165ba5d4 100644
--- a/exports/registry/registry.yml
+++ b/exports/registry/registry.yml
@@ -157,6 +157,7 @@ addgene:
     miriam: addgene
     n2t: addgene
     prefixcommons: addgene
+    re3data: r3d100010741
   name: Addgene Plasmid Repository
   pattern: ^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$
   preferred_prefix: addgene
@@ -555,6 +556,7 @@ amoebadb:
     miriam: amoebadb
     n2t: amoebadb
     prefixcommons: amoebadb
+    re3data: r3d100012457
   name: AmoebaDB
   pattern: ^EDI_\d+$
   preferred_prefix: amoebadb
@@ -800,6 +802,7 @@ arachnoserver:
     miriam: arachnoserver
     n2t: arachnoserver
     prefixcommons: arachnoserver
+    re3data: r3d100012902
     uniprot: ArachnoServer
   name: ArachnoServer
   pattern: ^AS\d{6}$
@@ -885,6 +888,7 @@ arrayexpress:
     miriam: arrayexpress
     n2t: arrayexpress
     prefixcommons: arrayexpress
+    re3data: r3d100010222
   name: ArrayExpress
   pattern: ^[AEP]-\w{4}-\d+$
   preferred_prefix: arrayexpress
@@ -923,6 +927,7 @@ arraymap:
     fairsharing: FAIRsharing.1fbc5y
     miriam: arraymap
     n2t: arraymap
+    re3data: r3d100012630
   name: ArrayMap
   pattern: ^[\w\-:,]{3,64}$
   preferred_prefix: arraymap
@@ -969,6 +974,7 @@ asap:
     n2t: asap
     ncbi: ASAP
     prefixcommons: asap
+    re3data: r3d100010666
   name: A Systematic Annotation Package for Community Analysis of Genomes
   pattern: ^[A-Za-z0-9-]+$
   preferred_prefix: asap
@@ -1210,6 +1216,7 @@ bacdive:
     fairsharing: FAIRsharing.aSszvY
     miriam: bacdive
     n2t: bacdive
+    re3data: r3d100013060
   name: Bacterial Diversity Metadatabase
   pattern: ^[0-9]+$
   preferred_prefix: bacdive
@@ -1269,6 +1276,7 @@ bactibase:
   mappings:
     fairsharing: FAIRsharing.5f5mfm
     prefixcommons: bactibase
+    re3data: r3d100012755
   name: Bactibase
   preferred_prefix: bactibase
   uri_format: http://bactibase.hammamilab.org/$1
@@ -1480,6 +1488,7 @@ beetlebase:
     n2t: beetlebase
     ncbi: BEETLEBASE
     prefixcommons: beetlebase
+    re3data: r3d100010921
   name: Tribolium Genome Database -- Insertion
   pattern: ^TC\d+$
   preferred_prefix: beetlebase
@@ -1752,6 +1761,7 @@ bindingdb:
     miriam: bindingdb
     n2t: bindingdb
     prefixcommons: bindingdb
+    re3data: r3d100012074
     uniprot: BindingDB
   name: BindingDB
   pattern: ^\w\d+$
@@ -1819,6 +1829,7 @@ biogrid:
     miriam: biogrid
     n2t: biogrid
     prefixcommons: biogrid
+    re3data: r3d100010350
     uniprot: BioGRID
   name: BioGRID
   pattern: ^\d+$
@@ -2017,6 +2028,7 @@ bioportal:
     miriam: bioportal
     n2t: bioportal
     prefixcommons: bioportal
+    re3data: r3d100012344
   name: BioPortal
   pattern: ^\d+$
   preferred_prefix: bioportal
@@ -2033,6 +2045,7 @@ bioproject:
     fairsharing: FAIRsharing.aqhv1y
     miriam: bioproject
     n2t: bioproject
+    re3data: r3d100013330
   name: BioProject
   pattern: ^PRJ[DEN][A-Z]\d+$
   preferred_prefix: bioproject
@@ -2159,6 +2172,7 @@ biosample:
     fairsharing: FAIRsharing.qr6pqk
     miriam: biosample
     n2t: biosample
+    re3data: r3d100012828
   name: BioSample
   pattern: ^SAM[NED](\w)?\d+$
   preferred_prefix: biosample
@@ -2185,6 +2199,7 @@ biosimulations:
   homepage: https://icahn.mssm.edu/
   mappings:
     miriam: biosimulations
+    re3data: r3d100013361
   name: biosimulations
   pattern: ^[a-zA-Z0-9_-]{3,}$
   preferred_prefix: biosimulations
@@ -2200,6 +2215,7 @@ biosimulators:
   mappings:
     fairsharing: FAIRsharing.pwEima
     miriam: biosimulators
+    re3data: r3d100013432
   name: BioSimulators
   pattern: ^[a-zA-Z0-9-_]+$
   preferred_prefix: biosimulators
@@ -2217,6 +2233,7 @@ biostudies:
     fairsharing: FAIRsharing.mtjvme
     miriam: biostudies
     n2t: biostudies
+    re3data: r3d100012627
   name: BioStudies database
   pattern: ^S-[A-Z]{4}[A-Z\d\-]+$
   preferred_prefix: biostudies
@@ -2247,6 +2264,7 @@ biotools:
     fairsharing: FAIRsharing.63520c
     miriam: biotools
     n2t: biotools
+    re3data: r3d100013668
   name: BioTools
   pattern: ^[-A-Za-z0-9\_]*$
   preferred_prefix: biotools
@@ -2304,6 +2322,7 @@ bitbucket:
   mappings:
     fairsharing: FAIRsharing.fc3431
     miriam: bitbucket
+    re3data: r3d100013478
   name: Bitbucket
   pattern: ^[0-9A-Za-z-_\.]+/[0-9A-Za-z-_\.]+$
   preferred_prefix: bitbucket
@@ -2469,6 +2488,7 @@ brenda:
     miriam: brenda
     n2t: brenda
     prefixcommons: brenda
+    re3data: r3d100010616
     uniprot: BRENDA
   name: BRENDA, The Comprehensive Enzyme Information System
   pattern: ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$
@@ -2866,6 +2886,7 @@ cath:
     miriam: cath
     n2t: cath
     prefixcommons: cath
+    re3data: r3d100012629
   name: CATH Protein Structural Domain Superfamily
   pattern: ^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$
   preferred_prefix: cath
@@ -3254,6 +3275,7 @@ cellosaurus:
     fairsharing: FAIRsharing.hkk309
     miriam: cellosaurus
     n2t: cellosaurus
+    re3data: r3d100013293
     wikidata: P3289
   name: Cellosaurus
   pattern: ^[A-Z0-9]{4}$
@@ -3353,6 +3375,7 @@ cgnc:
   homepage: http://birdgenenames.org/cgnc/
   mappings:
     prefixcommons: cgnc
+    re3data: r3d100012429
   name: Chicken Gene Nomenclature Consortium
   pattern: ^\d+$
   preferred_prefix: cgnc
@@ -3440,6 +3463,7 @@ chebi:
     ols: chebi
     ontobee: CHEBI
     prefixcommons: chebi
+    re3data: r3d100012626
     wikidata: P683
   name: Chemical Entities of Biological Interest
   namespace_in_lui: true
@@ -3469,6 +3493,7 @@ chembl:
     fairsharing: FAIRsharing.m3jtpg
     miriam: chembl
     prefixcommons: chembl
+    re3data: r3d100010539
     uniprot: ChEMBL
   name: ChEMBL
   pattern: ^CHEMBL\d+$
@@ -3632,6 +3657,7 @@ chemspider:
     miriam: chemspider
     n2t: chemspider
     prefixcommons: chemspider
+    re3data: r3d100010205
     wikidata: P661
   name: ChemSpider
   pattern: ^\d+$
@@ -4020,6 +4046,7 @@ clinvar:
     fairsharing: FAIRsharing.wx5r6f
     miriam: clinvar
     n2t: clinvar
+    re3data: r3d100013331
     wikidata: P1929
   name: ClinVar Variation
   pattern: ^\d+$
@@ -4972,6 +4999,7 @@ complexportal:
     go: ComplexPortal
     miriam: complexportal
     n2t: complexportal
+    re3data: r3d100013295
     uniprot: ComplexPortal
     wikidata: P7718
   name: Complex Portal
@@ -5112,6 +5140,7 @@ corrdb:
   mappings:
     fairsharing: FAIRsharing.IziuCK
     miriam: corrdb
+    re3data: r3d100011496
   name: CorrDB
   pattern: ^[0-9]+$
   preferred_prefix: corrdb
@@ -5371,6 +5400,7 @@ cryptodb:
     miriam: cryptodb
     n2t: cryptodb
     prefixcommons: cryptodb
+    re3data: r3d100012265
   name: CryptoDB
   pattern: ^\w+$
   preferred_prefix: cryptodb
@@ -5660,6 +5690,7 @@ dandi:
   homepage: https://dandiarchive.org/
   mappings:
     miriam: dandi
+    re3data: r3d100013638
   name: Distributed Archives for Neurophysiology Data Integration
   pattern: ^\d{6}(\/\d+\.\d+\.\d+)?$
   preferred_prefix: dandi
@@ -5937,6 +5968,7 @@ dbsnp:
     n2t: dbsnp
     ncbi: dbSNP
     prefixcommons: dbsnp
+    re3data: r3d100010652
     uniprot: dbSNP
   name: NCBI dbSNP
   pattern: ^rs\d+$
@@ -6204,6 +6236,7 @@ depod:
     fairsharing: FAIRsharing.q9j2e3
     miriam: depod
     n2t: depod
+    re3data: r3d100011936
     uniprot: DEPOD
   name: Human Dephosphorylation Database
   pattern: ^[A-Z0-9]+$
@@ -6373,6 +6406,7 @@ dictybase:
     go: dictyBase
     ncbi: dictyBase
     prefixcommons: dictybase
+    re3data: r3d100010586
     uniprot: dictyBase
   name: dictyBase
   preferred_prefix: dictybase
@@ -6562,6 +6596,7 @@ disprot:
     miriam: disprot
     n2t: disprot
     prefixcommons: disprot
+    re3data: r3d100010561
     uniprot: DisProt
   name: DisProt
   pattern: ^DP\d{5}$
@@ -6971,6 +7006,7 @@ drugbank:
     miriam: drugbank
     n2t: drugbank
     prefixcommons: drugbank
+    re3data: r3d100010544
     uniprot: DrugBank
     wikidata: P715
   name: DrugBank
@@ -7053,6 +7089,7 @@ dsmz:
   homepage: https://www.dsmz.de
   mappings:
     cellosaurus: DSMZ
+    re3data: r3d100010219
   name: Deutsche Sammlung von Mikroorganismen und Zellkulturen
   preferred_prefix: dsmz
   uri_format: https://www.dsmz.de/collection/catalogue/details/culture/$1
@@ -7114,6 +7151,7 @@ eaglei:
   homepage: https://hawaii.eagle-i.net
   mappings:
     cellosaurus: eagle-i
+    re3data: r3d100011564
   name: eagle-i
   preferred_prefix: eaglei
   uri_format: http://hawaii.eagle-i.net/i/$1
@@ -7276,6 +7314,7 @@ echobase:
     miriam: echobase
     n2t: echobase
     prefixcommons: echobase
+    re3data: r3d100011646
     uniprot: EchoBASE
   name: EchoBASE post-genomic database for Escherichia coli
   pattern: ^EB\d+$
@@ -7400,6 +7439,7 @@ ecogene:
     n2t: ecogene
     ncbi: EcoGene
     prefixcommons: ecogene
+    re3data: r3d100010546
   name: Database of Escherichia coli Sequence and Function
   pattern: ^EG\d+$
   preferred_prefix: ecogene
@@ -8044,6 +8084,7 @@ encode:
     fairsharing: FAIRsharing.v0hbjs
     miriam: encode
     n2t: encode
+    re3data: r3d100013051
   name: Encyclopedia of DNA Elements
   pattern: ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$
   preferred_prefix: encode
@@ -8087,6 +8128,7 @@ ensembl:
     n2t: ensembl
     ncbi: ENSEMBL
     prefixcommons: ensembl
+    re3data: r3d100010228
     uniprot: Ensembl
     wikidata: P594
   name: Ensembl Gene
@@ -8145,6 +8187,7 @@ ensembl.bacteria:
     miriam: ensembl.bacteria
     n2t: ensembl.bacteria
     prefixcommons: ensembl.bacteria
+    re3data: r3d100011195
     uniprot: EnsemblBacteria
   name: Ensembl Bacteria
   pattern: ^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$
@@ -8163,6 +8206,7 @@ ensembl.fungi:
     miriam: ensembl.fungi
     n2t: ensembl.fungi
     prefixcommons: ensembl.fungi
+    re3data: r3d100011196
     uniprot: EnsemblFungi
   name: Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.
   pattern: ^[A-Z-a-z0-9]+$
@@ -8181,6 +8225,7 @@ ensembl.metazoa:
     miriam: ensembl.metazoa
     n2t: ensembl.metazoa
     prefixcommons: ensembl.metazoa
+    re3data: r3d100011198
     uniprot: EnsemblMetazoa
   name: Ensembl Metazoa, the Ensembl database for accessing genome-scale data from
     non-vertebrate metazoa.
@@ -8240,6 +8285,7 @@ envipath:
   mappings:
     fairsharing: FAIRsharing.g0c5qn
     miriam: envipath
+    re3data: r3d100012715
   name: enviPath
   pattern: ^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$
   preferred_prefix: envipath
@@ -8367,6 +8413,7 @@ eol:
     bioportal: EOL
     fairsharing: FAIRsharing.w7bw2y
     ols: eol
+    re3data: r3d100011663
   name: Environment Ontology for Livestock
   pattern: ^\d{7}$
   preferred_prefix: eol
@@ -8793,6 +8840,7 @@ facebase:
     fairsharing: FAIRsharing.mqvqde
     miriam: facebase
     n2t: facebase
+    re3data: r3d100013263
   name: FaceBase Data Repository
   pattern: ^FB\d{8}$
   preferred_prefix: facebase
@@ -8809,6 +8857,7 @@ fairsharing:
     fairsharing: FAIRsharing.2abjs5
     miriam: fairsharing
     n2t: fairsharing
+    re3data: r3d100010142
   name: FAIRsharing
   pattern: ^bsg-[dscp]?\d{6}$
   preferred_prefix: fairsharing
@@ -9127,6 +9176,7 @@ fishbase.species:
   example: '6472'
   homepage: http://fishbase.org
   mappings:
+    re3data: r3d100010912
     wikidata: P938
   name: FishBase
   pattern: ^\d+$
@@ -9213,6 +9263,7 @@ flowrepository:
     fairsharing: FAIRsharing.veg2d6
     miriam: flowrepository
     n2t: flowrepository
+    re3data: r3d100011280
   name: FlowRepository
   pattern: ^FR\-FCM\-\w{4}$
   preferred_prefix: flowrepository
@@ -9251,6 +9302,7 @@ flybase:
     n2t: fb
     ncbi: FLYBASE
     prefixcommons: flybase
+    re3data: r3d100010591
     uniprot: FlyBase
     wikidata: P3852
   name: FlyBase Gene
@@ -9383,6 +9435,7 @@ foodb.compound:
     biolink: foodb.compound
     miriam: foodb.compound
     n2t: foodb.compound
+    re3data: r3d100012152
   name: FooDB Compound
   pattern: ^FDB\d+$
   preferred_prefix: foodb.compound
@@ -9735,6 +9788,7 @@ fungidb:
     fairsharing: FAIRsharing.xf30yc
     miriam: fungidb
     n2t: fungidb
+    re3data: r3d100011906
   name: FungiDB
   pattern: ^[A-Za-z_0-9]+$
   preferred_prefix: fungidb
@@ -10072,6 +10126,7 @@ genbank:
     fairsharing: FAIRsharing.9kahy4
     go: GenBank
     prefixcommons: genbank
+    re3data: r3d100010528
     uniprot: GenBank
   name: GenBank
   preferred_prefix: genbank
@@ -10089,6 +10144,7 @@ genecards:
     miriam: genecards
     n2t: genecards
     prefixcommons: genecards
+    re3data: r3d100012015
     uniprot: GeneCards
   name: GeneCards
   pattern: ^[A-Za-z-0-9_]+(\@)?$
@@ -10111,6 +10167,7 @@ genedb:
     n2t: genedb
     ncbi: GeneDB
     prefixcommons: genedb
+    re3data: r3d100010626
     uniprot: GeneDB
     wikidata: P3382
   name: GeneDB
@@ -10322,6 +10379,7 @@ geonames:
   homepage: https://www.geonames.org
   mappings:
     fairsharing: FAIRsharing.56a0Uj
+    re3data: r3d100010245
   name: GeoNames
   pattern: ^\d+$
   preferred_prefix: geonames
@@ -10387,6 +10445,7 @@ giardiadb:
     miriam: giardiadb
     n2t: giardiadb
     prefixcommons: giardiadb
+    re3data: r3d100012458
   name: GiardiaDB
   pattern: ^\w+$
   preferred_prefix: giardiadb
@@ -10401,6 +10460,7 @@ github:
   mappings:
     fairsharing: FAIRsharing.c55d5e
     miriam: github
+    re3data: r3d100010375
   name: github
   pattern: ^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$
   preferred_prefix: github
@@ -10505,6 +10565,7 @@ glycomedb:
     miriam: glycomedb
     n2t: glycomedb
     prefixcommons: glycomedb
+    re3data: r3d100011527
   name: GlycomeDB
   pattern: ^\w+$
   preferred_prefix: glycomedb
@@ -10562,6 +10623,7 @@ glytoucan:
     biocontext: GLYTOUCAN
     miriam: glytoucan
     n2t: glytoucan
+    re3data: r3d100012388
   name: GlyTouCan
   pattern: ^G[0-9]{5}[A-Z]{2}$
   preferred_prefix: glytoucan
@@ -10701,6 +10763,7 @@ gnpis:
     fairsharing: FAIRsharing.dw22y3
     miriam: gnpis
     n2t: gnpis
+    re3data: r3d100012647
   name: GnpIS
   pattern: ^[A-Za-z0-9]+$
   preferred_prefix: gnpis
@@ -11189,6 +11252,7 @@ greengenes:
     n2t: greengenes
     ncbi: Greengenes
     prefixcommons: greengenes
+    re3data: r3d100010549
   name: 16S rRNA gene database
   pattern: ^\d+$
   preferred_prefix: greengenes
@@ -11351,6 +11415,7 @@ gudmap:
     fairsharing: FAIRsharing.910c39
     miriam: gudmap
     n2t: gudmap
+    re3data: r3d100012193
   name: Genitourinary Development Molecular Anatomy Project
   pattern: ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$
   preferred_prefix: gudmap
@@ -12135,6 +12200,7 @@ hpscreg:
     fairsharing: FAIRsharing.7C0aVE
     miriam: hpscreg
     n2t: hpscreg
+    re3data: r3d100012863
   name: Human Pluripotent Stem Cell Registry
   pattern: ^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$
   preferred_prefix: hpscreg
@@ -12892,6 +12958,7 @@ imex:
     miriam: imex
     n2t: imex
     prefixcommons: imex
+    re3data: r3d100010669
   name: International Molecular Exchange
   pattern: ^IM-\d+(-?)(\d+?)$
   preferred_prefix: imex
@@ -13273,6 +13340,7 @@ intact:
     miriam: intact
     n2t: intact
     prefixcommons: intact
+    re3data: r3d100010671
     uniprot: IntAct
   name: IntAct protein interaction database
   pattern: ^EBI\-[0-9]+$
@@ -13338,6 +13406,7 @@ interpro:
     ncbi: InterPro
     obofoundry: ipr
     prefixcommons: interpro
+    re3data: r3d100010798
     uniprot: InterPro
     wikidata: P2926
   name: InterPro
@@ -13384,6 +13453,7 @@ irefweb:
     miriam: irefweb
     n2t: irefweb
     prefixcommons: irefweb
+    re3data: r3d100012725
   name: iRefWeb
   pattern: ^\d+$
   preferred_prefix: irefweb
@@ -13498,6 +13568,7 @@ itis:
   homepage: https://www.itis.gov/
   mappings:
     fairsharing: FAIRsharing.t19hpa
+    re3data: r3d100011213
     wikidata: P815
   name: Integrated Taxonomic Information System
   pattern: ^\d+$
@@ -13718,6 +13789,7 @@ kaggle:
   mappings:
     miriam: kaggle
     n2t: kaggle
+    re3data: r3d100012705
   name: Kaggle
   pattern: ^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$
   preferred_prefix: kaggle
@@ -14255,6 +14327,7 @@ licebase:
     fairsharing: FAIRsharing.c7w81a
     miriam: licebase
     n2t: licebase
+    re3data: r3d100013547
   name: LiceBase
   pattern: ^[A-Za-z0-9\-\/]+$
   preferred_prefix: licebase
@@ -14733,6 +14806,7 @@ maizegdb.locus:
     n2t: maizegdb.locus
     ncbi: MaizeGDB
     prefixcommons: maizegdb
+    re3data: r3d100010795
     uniprot: MaizeGDB
   name: MaizeGDB Locus
   pattern: ^\d+$
@@ -14859,6 +14933,7 @@ matrixdb:
   mappings:
     fairsharing: FAIRsharing.91yrz6
     prefixcommons: matrixdb
+    re3data: r3d100010672
   name: MatrixDB
   preferred_prefix: matrixdb
   uri_format: http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1
@@ -15210,6 +15285,7 @@ metabolights:
     cellosaurus: MetaboLights
     miriam: metabolights
     n2t: metabolights
+    re3data: r3d100011556
     wikidata: P3890
   name: MetaboLights Compound
   pattern: ^MTBLS\d+$
@@ -15237,6 +15313,7 @@ metacyc.compound:
     go: MetaCyc
     miriam: metacyc.compound
     n2t: metacyc.compound
+    re3data: r3d100011294
   name: Metabolic Encyclopedia of metabolic and other pathways
   pattern: ^[A-Za-z0-9+_.%-:]+$
   preferred_prefix: metacyc.compound
@@ -15323,6 +15400,7 @@ metlin:
     biocontext: METLIN
     miriam: metlin
     n2t: metlin
+    re3data: r3d100012311
   name: Metabolite and Tandem Mass Spectrometry Database
   pattern: ^\d{4}$
   preferred_prefix: metlin
@@ -15694,6 +15772,7 @@ microscope:
     fairsharing: FAIRsharing.3t5qc3
     miriam: microscope
     n2t: microscope
+    re3data: r3d100012928
   name: MicroScope
   pattern: ^\d+$
   preferred_prefix: microscope
@@ -15843,6 +15922,7 @@ mirbase:
     n2t: mirbase
     ncbi: miRBase
     prefixcommons: mirbase
+    re3data: r3d100010566
     wikidata: P2870
   name: miRBase pre-miRNA
   pattern: ^MI\d{7}$
@@ -16322,6 +16402,7 @@ modeldb:
     miriam: modeldb
     n2t: modeldb
     prefixcommons: modeldb
+    re3data: r3d100011330
   name: ModelDB
   pattern: ^\d+$
   preferred_prefix: modeldb
@@ -16833,6 +16914,7 @@ mycobank:
     n2t: mycobank
     ncbi: MycoBank
     prefixcommons: mycobank
+    re3data: r3d100011222
   name: Fungal Nomenclature and Species Bank
   pattern: ^\d+$
   preferred_prefix: mycobank
@@ -16951,6 +17033,7 @@ nasc:
     miriam: nasc
     n2t: nasc
     prefixcommons: nasc
+    re3data: r3d100010906
   name: NASC code
   pattern: ^(\w+)?\d+$
   preferred_prefix: nasc
@@ -17095,6 +17178,7 @@ ncbi.assembly:
   mappings:
     biocontext: NCBIAssembly
     miriam: assembly
+    re3data: r3d100012688
   name: Assembly
   pattern: ^[a-zA-Z0-9_\.]+$
   preferred_prefix: ncbi.assembly
@@ -17112,6 +17196,7 @@ ncbi.genome:
   mappings:
     biocontext: NCBIGenome
     edam: '2787'
+    re3data: r3d100010785
   name: NCBI Genome
   pattern: ^\d+$
   preferred_prefix: ncbi.genome
@@ -17159,6 +17244,7 @@ ncbigene:
     n2t: ncbigene
     ncbi: GeneID
     prefixcommons: ncbigene
+    re3data: r3d100010650
     wikidata: P351
   name: Entrez Gene
   pattern: ^\d+$
@@ -17200,6 +17286,7 @@ ncbiprotein:
     miriam: ncbiprotein
     n2t: ncbiprotein
     prefixcommons: ncbi.protein
+    re3data: r3d100010776
   name: NCBI Protein
   pattern: ^(\w+\d+(\.\d+)?)|(NP_\d+)$
   preferred_prefix: NCBIProtein
@@ -17249,6 +17336,7 @@ ncbitaxon:
     ols: ncbitaxon
     ontobee: NCBITaxon
     prefixcommons: uniprot.taxonomy
+    re3data: r3d100010415
     wikidata: P685
   name: NCBI Taxonomy
   pattern: ^\d+$
@@ -17278,6 +17366,7 @@ ncbitaxon:
     uri_format: https://bio2rdf.org/taxonomy:$1
   repository: https://github.com/obophenotype/ncbitaxon
   synonyms:
+  - NCBI Taxonomy
   - NCBITaxon
   - NCBI_Taxon_ID
   - NCBI_taxid
@@ -20263,6 +20352,7 @@ pathwaycommons:
     miriam: pathwaycommons
     n2t: pathwaycommons
     prefixcommons: pathwaycommons
+    re3data: r3d100012731
     uniprot: PathwayCommons
   name: Pathway Commons
   pattern: ^\d+$
@@ -20531,6 +20621,7 @@ pdb:
     n2t: pdb
     ncbi: PDB
     prefixcommons: pdbj
+    re3data: r3d100010910
     uniprot: RCSB-PDB
     wikidata: P638
   name: PDB Structure
@@ -20769,6 +20860,7 @@ peptideatlas:
     miriam: peptideatlas
     n2t: peptideatlas
     prefixcommons: peptideatlas
+    re3data: r3d100010889
     uniprot: PeptideAtlas
   name: PeptideAtlas
   pattern: ^PAp[0-9]{8}$
@@ -20922,6 +21014,7 @@ pgx:
     fairsharing: FAIRsharing.65tdnz
     miriam: pgx
     n2t: pgx
+    re3data: r3d100012820
   name: Progenetix
   pattern: ^\w{3,15}[-_]\w[\w.-]{3,128}$
   preferred_prefix: pgx
@@ -21065,6 +21158,7 @@ phenolexplorer:
     biocontext: PHENOLEXPLORER
     miriam: phenolexplorer
     n2t: phenolexplorer
+    re3data: r3d100012197
   name: Phenol-Explorer
   pattern: ^\d+$
   preferred_prefix: phenolexplorer
@@ -21443,6 +21537,7 @@ plasmodb:
     n2t: plasmodb
     ncbi: ApiDB_PlasmoDB
     prefixcommons: plasmodb
+    re3data: r3d100011569
   name: PlasmoDB
   pattern: ^\w+$
   preferred_prefix: plasmodb
@@ -21661,6 +21756,7 @@ pombase:
     n2t: pombase
     ncbi: PomBase
     prefixcommons: pombase
+    re3data: r3d100011478
     uniprot: PomBase
     wikidata: P6245
   name: PomBase
@@ -22300,6 +22396,7 @@ pubchem.compound:
     miriam: pubchem.compound
     n2t: pubchem.compound
     prefixcommons: pubchem.compound
+    re3data: r3d100010129
     wikidata: P662
   name: PubChem CID
   part_of: pubchem
@@ -22724,6 +22821,7 @@ reactome:
     miriam: reactome
     n2t: reactome
     prefixcommons: reactome
+    re3data: r3d100010861
     uniprot: Reactome
     wikidata: P3937
   name: Reactome
@@ -22773,6 +22871,7 @@ rebase:
     miriam: rebase
     n2t: rebase
     prefixcommons: rebase
+    re3data: r3d100012171
     uniprot: REBASE
   name: REBASE restriction enzyme database
   pattern: ^\d+$
@@ -23080,6 +23179,7 @@ rhea:
     miriam: rhea
     n2t: rhea
     prefixcommons: rhea
+    re3data: r3d100010891
   name: Rhea, the Annotated Reactions Database
   pattern: ^\d{5}$
   preferred_prefix: rhea
@@ -23529,6 +23629,7 @@ sabiork.reaction:
     miriam: sabiork.reaction
     n2t: sabiork.reaction
     prefixcommons: sabiork.reaction
+    re3data: r3d100011052
     uniprot: SABIO-RK
   name: SABIO-RK Reaction
   pattern: ^\d+$
@@ -23601,6 +23702,7 @@ sasbdb:
     fairsharing: FAIRsharing.i1F3Hb
     miriam: sasbdb
     n2t: sasbdb
+    re3data: r3d100012273
     uniprot: SASBDB
   name: Small Angle Scattering Biological Data Bank
   pattern: ^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$
@@ -24563,6 +24665,7 @@ soybase:
     miriam: soybase
     n2t: soybase
     ncbi: SoyBase
+    re3data: r3d100010846
   name: Glycine max Genome Database
   pattern: ^\w+(\-)?\w+(\-)?\w+$
   preferred_prefix: soybase
@@ -24822,6 +24925,7 @@ storedb:
     fairsharing: FAIRsharing.6h8d2r
     miriam: storedb
     n2t: storedb
+    re3data: r3d100011049
   name: Store DB
   namespace_in_lui: true
   pattern: ^(STUDY|FILE|DATASET)\d+$
@@ -24895,6 +24999,7 @@ string:
     miriam: string
     n2t: string
     prefixcommons: string
+    re3data: r3d100010604
     uniprot: STRING
   name: Search Tool for Retrieval of Interacting Genes/Proteins
   pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z,
@@ -25055,6 +25160,7 @@ swisslipid:
     fairsharing: FAIRsharing.pxr7x2
     miriam: slm
     n2t: swisslipid
+    re3data: r3d100012603
     uniprot: SwissLipids
     wikidata: P8691
   name: SwissLipid
@@ -25164,6 +25270,7 @@ t3db:
     miriam: t3db
     n2t: t3db
     prefixcommons: t3db
+    re3data: r3d100012189
   name: Toxin and Toxin Target Database
   pattern: ^T3D\d+$
   preferred_prefix: t3db
@@ -25628,6 +25735,7 @@ topfind:
     fairsharing: FAIRsharing.rkpmhn
     miriam: topfind
     n2t: topfind
+    re3data: r3d100012721
   name: TopFind
   pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z,
     0-9][A-Z, 0-9][0-9])$
@@ -25707,6 +25815,7 @@ treebase:
     miriam: treebase
     n2t: treebase
     prefixcommons: treebase
+    re3data: r3d100010170
   name: TreeBASE
   pattern: ^TB[1,2]?:[A-Z][a-z]?\d+$
   preferred_prefix: treebase
@@ -25743,6 +25852,7 @@ trichdb:
     fairsharing: FAIRsharing.pv0ezt
     miriam: trichdb
     n2t: trichdb
+    re3data: r3d100012461
   name: TrichDB
   pattern: ^\w+$
   preferred_prefix: trichdb
@@ -25763,6 +25873,7 @@ tritrypdb:
     go: TriTrypDB
     miriam: tritrypdb
     n2t: tritrypdb
+    re3data: r3d100011479
   name: TriTrypDB
   pattern: ^\w+(\.)?\w+(\.)?\w+$
   preferred_prefix: tritrypdb
@@ -26140,6 +26251,7 @@ unigene:
     miriam: unigene
     n2t: unigene
     prefixcommons: unigene
+    re3data: r3d100010774
   name: UniGene
   pattern: ^\d+$
   preferred_prefix: unigene
@@ -26199,6 +26311,7 @@ uniparc:
     miriam: uniparc
     n2t: uniparc
     prefixcommons: uniparc
+    re3data: r3d100011519
   name: UniProt Archive
   pattern: ^UPI[A-F0-9]{10}$
   preferred_prefix: uniparc
@@ -26259,6 +26372,7 @@ uniprot:
     n2t: uniprot
     ncbi: UniProt
     prefixcommons: uniprot
+    re3data: r3d100011521
     wikidata: P352
   name: UniProt Protein
   pattern: ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z,
@@ -26508,6 +26622,7 @@ uniref:
   mappings:
     edam: '2346'
     miriam: uniref
+    re3data: r3d100011518
   name: UniRef
   pattern: ^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$
   preferred_prefix: uniref
@@ -26559,6 +26674,7 @@ unite:
     n2t: unite
     ncbi: UNITE
     prefixcommons: unite
+    re3data: r3d100011316
   name: Molecular database for the identification of fungi
   pattern: ^UDB\d{6}$
   preferred_prefix: unite
@@ -26830,6 +26946,7 @@ vectorbase:
     n2t: vectorbase
     ncbi: VectorBase
     prefixcommons: vectorbase
+    re3data: r3d100010880
   name: Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens
   pattern: ^\D{4}\d{6}(\-\D{2})?$
   preferred_prefix: vectorbase
@@ -26847,6 +26964,7 @@ vega:
   mappings:
     fairsharing: FAIRsharing.mr293q
     prefixcommons: vega
+    re3data: r3d100012575
   name: Vertebrate Genome Annotation Database
   preferred_prefix: vega
   synonyms:
@@ -26865,6 +26983,7 @@ vegbank:
   homepage: http://vegbank.org/
   mappings:
     miriam: vegbank
+    re3data: r3d100010153
   name: VegBank
   pattern: ^VB\.[A-Za-z][A-Za-z]\..*$
   preferred_prefix: vegbank
@@ -27020,6 +27139,7 @@ viralzone:
     fairsharing: FAIRsharing.tppk10
     miriam: viralzone
     n2t: viralzone
+    re3data: r3d100013314
   name: ViralZone
   pattern: ^\d+$
   preferred_prefix: viralzone
@@ -27507,6 +27627,7 @@ wikipathways:
     miriam: wikipathways
     n2t: wikipathways
     prefixcommons: wikipathways
+    re3data: r3d100013316
     wikidata: P2410
   name: WikiPathways
   pattern: ^WP\d{1,5}(\_r\d+)?$
@@ -27581,6 +27702,7 @@ wormbase:
     n2t: wb
     ncbi: WormBase
     prefixcommons: wormbase
+    re3data: r3d100010424
     uniprot: WormBase
     wikidata: P3860
   name: WormBase database of nematode biology
@@ -27740,6 +27862,7 @@ xenbase:
     n2t: xenbase
     ncbi: Xenbase
     prefixcommons: xenbase
+    re3data: r3d100011331
     uniprot: Xenbase
   name: Xenbase
   pattern: ^XB\-\w+\-\d+$
@@ -28063,6 +28186,7 @@ zenodo.record:
   example: '4390079'
   homepage: https://zenodo.org
   mappings:
+    re3data: r3d100010468
     wikidata: P4901
   name: Zenodo
   pattern: ^\d+$
@@ -28176,6 +28300,7 @@ zinc:
     biocontext: ZINC
     miriam: zinc
     n2t: zinc
+    re3data: r3d100010372
     wikidata: P2084
   name: ZINC is not Commercial
   pattern: ^(ZINC)?\d+$
diff --git a/exports/sssom/bioregistry.sssom.tsv b/exports/sssom/bioregistry.sssom.tsv
index 8d00c616e..a5da5dc9f 100644
--- a/exports/sssom/bioregistry.sssom.tsv
+++ b/exports/sssom/bioregistry.sssom.tsv
@@ -26,6 +26,7 @@ bioregistry:addgene	skos:exactMatch	fairsharing:FAIRsharing.8hcczk	sssom:HumanCu
 bioregistry:addgene	skos:exactMatch	miriam:addgene	sssom:HumanCurated
 bioregistry:addgene	skos:exactMatch	n2t:addgene	sssom:HumanCurated
 bioregistry:addgene	skos:exactMatch	prefixcommons:addgene	sssom:HumanCurated
+bioregistry:addgene	skos:exactMatch	re3data:r3d100010741	sssom:HumanCurated
 bioregistry:ado	skos:exactMatch	aberowl:ADO	sssom:HumanCurated
 bioregistry:ado	skos:exactMatch	bioportal:ADO	sssom:HumanCurated
 bioregistry:ado	skos:exactMatch	fairsharing:FAIRsharing.ckd4rf	sssom:HumanCurated
@@ -113,6 +114,7 @@ bioregistry:amoebadb	skos:exactMatch	fairsharing:FAIRsharing.swbypy	sssom:HumanC
 bioregistry:amoebadb	skos:exactMatch	miriam:amoebadb	sssom:HumanCurated
 bioregistry:amoebadb	skos:exactMatch	n2t:amoebadb	sssom:HumanCurated
 bioregistry:amoebadb	skos:exactMatch	prefixcommons:amoebadb	sssom:HumanCurated
+bioregistry:amoebadb	skos:exactMatch	re3data:r3d100012457	sssom:HumanCurated
 bioregistry:amphx	skos:exactMatch	aberowl:AMPHX	sssom:HumanCurated
 bioregistry:amphx	skos:exactMatch	bioportal:AMPHX	sssom:HumanCurated
 bioregistry:amphx	skos:exactMatch	obofoundry:amphx	sssom:HumanCurated
@@ -174,6 +176,7 @@ bioregistry:arachnoserver	skos:exactMatch	fairsharing:FAIRsharing.c54ywe	sssom:H
 bioregistry:arachnoserver	skos:exactMatch	miriam:arachnoserver	sssom:HumanCurated
 bioregistry:arachnoserver	skos:exactMatch	n2t:arachnoserver	sssom:HumanCurated
 bioregistry:arachnoserver	skos:exactMatch	prefixcommons:arachnoserver	sssom:HumanCurated
+bioregistry:arachnoserver	skos:exactMatch	re3data:r3d100012902	sssom:HumanCurated
 bioregistry:ardb	skos:exactMatch	biocontext:ARDB	sssom:HumanCurated
 bioregistry:ardb	skos:exactMatch	miriam:ardb	sssom:HumanCurated
 bioregistry:ardb	skos:exactMatch	n2t:ardb	sssom:HumanCurated
@@ -192,6 +195,7 @@ bioregistry:arrayexpress	skos:exactMatch	fairsharing:FAIRsharing.6k0kwd	sssom:Hu
 bioregistry:arrayexpress	skos:exactMatch	miriam:arrayexpress	sssom:HumanCurated
 bioregistry:arrayexpress	skos:exactMatch	n2t:arrayexpress	sssom:HumanCurated
 bioregistry:arrayexpress	skos:exactMatch	prefixcommons:arrayexpress	sssom:HumanCurated
+bioregistry:arrayexpress	skos:exactMatch	re3data:r3d100010222	sssom:HumanCurated
 bioregistry:arrayexpress.platform	skos:exactMatch	biocontext:ARRAYEXPRESS.PLATFORM	sssom:HumanCurated
 bioregistry:arrayexpress.platform	skos:exactMatch	miriam:arrayexpress.platform	sssom:HumanCurated
 bioregistry:arrayexpress.platform	skos:exactMatch	n2t:arrayexpress.platform	sssom:HumanCurated
@@ -199,6 +203,7 @@ bioregistry:arraymap	skos:exactMatch	biocontext:ARRAYMAP	sssom:HumanCurated
 bioregistry:arraymap	skos:exactMatch	fairsharing:FAIRsharing.1fbc5y	sssom:HumanCurated
 bioregistry:arraymap	skos:exactMatch	miriam:arraymap	sssom:HumanCurated
 bioregistry:arraymap	skos:exactMatch	n2t:arraymap	sssom:HumanCurated
+bioregistry:arraymap	skos:exactMatch	re3data:r3d100012630	sssom:HumanCurated
 bioregistry:arxiv	skos:exactMatch	biocontext:ARXIV	sssom:HumanCurated
 bioregistry:arxiv	skos:exactMatch	miriam:arxiv	sssom:HumanCurated
 bioregistry:arxiv	skos:exactMatch	n2t:arxiv	sssom:HumanCurated
@@ -208,6 +213,7 @@ bioregistry:asap	skos:exactMatch	fairsharing:FAIRsharing.anpa6	sssom:HumanCurate
 bioregistry:asap	skos:exactMatch	miriam:asap	sssom:HumanCurated
 bioregistry:asap	skos:exactMatch	n2t:asap	sssom:HumanCurated
 bioregistry:asap	skos:exactMatch	prefixcommons:asap	sssom:HumanCurated
+bioregistry:asap	skos:exactMatch	re3data:r3d100010666	sssom:HumanCurated
 bioregistry:ascl	skos:exactMatch	biocontext:ASCL	sssom:HumanCurated
 bioregistry:ascl	skos:exactMatch	fairsharing:FAIRsharing.wb0txg	sssom:HumanCurated
 bioregistry:ascl	skos:exactMatch	miriam:ascl	sssom:HumanCurated
@@ -256,6 +262,7 @@ bioregistry:autdb	skos:exactMatch	n2t:autdb	sssom:HumanCurated
 bioregistry:bacdive	skos:exactMatch	fairsharing:FAIRsharing.aSszvY	sssom:HumanCurated
 bioregistry:bacdive	skos:exactMatch	miriam:bacdive	sssom:HumanCurated
 bioregistry:bacdive	skos:exactMatch	n2t:bacdive	sssom:HumanCurated
+bioregistry:bacdive	skos:exactMatch	re3data:r3d100013060	sssom:HumanCurated
 bioregistry:bacmap.biog	skos:exactMatch	biocontext:BACMAP.BIOG	sssom:HumanCurated
 bioregistry:bacmap.biog	skos:exactMatch	miriam:bacmap.biog	sssom:HumanCurated
 bioregistry:bacmap.biog	skos:exactMatch	n2t:bacmap.biog	sssom:HumanCurated
@@ -264,6 +271,7 @@ bioregistry:bacmap.map	skos:exactMatch	miriam:bacmap.map	sssom:HumanCurated
 bioregistry:bacmap.map	skos:exactMatch	n2t:bacmap.map	sssom:HumanCurated
 bioregistry:bactibase	skos:exactMatch	fairsharing:FAIRsharing.5f5mfm	sssom:HumanCurated
 bioregistry:bactibase	skos:exactMatch	prefixcommons:bactibase	sssom:HumanCurated
+bioregistry:bactibase	skos:exactMatch	re3data:r3d100012755	sssom:HumanCurated
 bioregistry:bao	skos:exactMatch	aberowl:BAO	sssom:HumanCurated
 bioregistry:bao	skos:exactMatch	biocontext:BAO	sssom:HumanCurated
 bioregistry:bao	skos:exactMatch	bioportal:BAO	sssom:HumanCurated
@@ -306,6 +314,7 @@ bioregistry:beetlebase	skos:exactMatch	fairsharing:FAIRsharing.h5f091	sssom:Huma
 bioregistry:beetlebase	skos:exactMatch	miriam:beetlebase	sssom:HumanCurated
 bioregistry:beetlebase	skos:exactMatch	n2t:beetlebase	sssom:HumanCurated
 bioregistry:beetlebase	skos:exactMatch	prefixcommons:beetlebase	sssom:HumanCurated
+bioregistry:beetlebase	skos:exactMatch	re3data:r3d100010921	sssom:HumanCurated
 bioregistry:begdb	skos:exactMatch	biocontext:BEGDB	sssom:HumanCurated
 bioregistry:begdb	skos:exactMatch	fairsharing:FAIRsharing.nbe4fq	sssom:HumanCurated
 bioregistry:begdb	skos:exactMatch	miriam:begdb	sssom:HumanCurated
@@ -372,6 +381,7 @@ bioregistry:bindingdb	skos:exactMatch	fairsharing:FAIRsharing.3b36hk	sssom:Human
 bioregistry:bindingdb	skos:exactMatch	miriam:bindingdb	sssom:HumanCurated
 bioregistry:bindingdb	skos:exactMatch	n2t:bindingdb	sssom:HumanCurated
 bioregistry:bindingdb	skos:exactMatch	prefixcommons:bindingdb	sssom:HumanCurated
+bioregistry:bindingdb	skos:exactMatch	re3data:r3d100012074	sssom:HumanCurated
 bioregistry:biocarta.pathway	skos:exactMatch	biocontext:BIOCARTA.PATHWAY	sssom:HumanCurated
 bioregistry:biocarta.pathway	skos:exactMatch	miriam:biocarta.pathway	sssom:HumanCurated
 bioregistry:biocarta.pathway	skos:exactMatch	n2t:biocarta.pathway	sssom:HumanCurated
@@ -387,6 +397,7 @@ bioregistry:biogrid	skos:exactMatch	fairsharing:FAIRsharing.9d5f5r	sssom:HumanCu
 bioregistry:biogrid	skos:exactMatch	miriam:biogrid	sssom:HumanCurated
 bioregistry:biogrid	skos:exactMatch	n2t:biogrid	sssom:HumanCurated
 bioregistry:biogrid	skos:exactMatch	prefixcommons:biogrid	sssom:HumanCurated
+bioregistry:biogrid	skos:exactMatch	re3data:r3d100010350	sssom:HumanCurated
 bioregistry:biogrid.interaction	bfo:0000050	bioregistry:biogrid	sssom:HumanCurated
 bioregistry:biolink	skos:exactMatch	aberowl:BIOLINK	sssom:HumanCurated
 bioregistry:biolink	skos:exactMatch	biolink:biolink	sssom:HumanCurated
@@ -429,20 +440,26 @@ bioregistry:bioportal	skos:exactMatch	fairsharing:FAIRsharing.4m97ah	sssom:Human
 bioregistry:bioportal	skos:exactMatch	miriam:bioportal	sssom:HumanCurated
 bioregistry:bioportal	skos:exactMatch	n2t:bioportal	sssom:HumanCurated
 bioregistry:bioportal	skos:exactMatch	prefixcommons:bioportal	sssom:HumanCurated
+bioregistry:bioportal	skos:exactMatch	re3data:r3d100012344	sssom:HumanCurated
 bioregistry:bioproject	skos:exactMatch	biocontext:BIOPROJECT	sssom:HumanCurated
 bioregistry:bioproject	skos:exactMatch	fairsharing:FAIRsharing.aqhv1y	sssom:HumanCurated
 bioregistry:bioproject	skos:exactMatch	miriam:bioproject	sssom:HumanCurated
 bioregistry:bioproject	skos:exactMatch	n2t:bioproject	sssom:HumanCurated
+bioregistry:bioproject	skos:exactMatch	re3data:r3d100013330	sssom:HumanCurated
 bioregistry:biosample	skos:exactMatch	biocontext:BIOSAMPLE	sssom:HumanCurated
 bioregistry:biosample	skos:exactMatch	fairsharing:FAIRsharing.qr6pqk	sssom:HumanCurated
 bioregistry:biosample	skos:exactMatch	miriam:biosample	sssom:HumanCurated
 bioregistry:biosample	skos:exactMatch	n2t:biosample	sssom:HumanCurated
+bioregistry:biosample	skos:exactMatch	re3data:r3d100012828	sssom:HumanCurated
 bioregistry:biosimulations	skos:exactMatch	miriam:biosimulations	sssom:HumanCurated
+bioregistry:biosimulations	skos:exactMatch	re3data:r3d100013361	sssom:HumanCurated
 bioregistry:biosimulators	skos:exactMatch	fairsharing:FAIRsharing.pwEima	sssom:HumanCurated
 bioregistry:biosimulators	skos:exactMatch	miriam:biosimulators	sssom:HumanCurated
+bioregistry:biosimulators	skos:exactMatch	re3data:r3d100013432	sssom:HumanCurated
 bioregistry:biostudies	skos:exactMatch	fairsharing:FAIRsharing.mtjvme	sssom:HumanCurated
 bioregistry:biostudies	skos:exactMatch	miriam:biostudies	sssom:HumanCurated
 bioregistry:biostudies	skos:exactMatch	n2t:biostudies	sssom:HumanCurated
+bioregistry:biostudies	skos:exactMatch	re3data:r3d100012627	sssom:HumanCurated
 bioregistry:biosystems	skos:exactMatch	biocontext:BIOSYSTEMS	sssom:HumanCurated
 bioregistry:biosystems	skos:exactMatch	fairsharing:FAIRsharing.w2eeqr	sssom:HumanCurated
 bioregistry:biosystems	skos:exactMatch	miriam:biosystems	sssom:HumanCurated
@@ -452,12 +469,14 @@ bioregistry:biotools	skos:exactMatch	biocontext:BIOTOOLS	sssom:HumanCurated
 bioregistry:biotools	skos:exactMatch	fairsharing:FAIRsharing.63520c	sssom:HumanCurated
 bioregistry:biotools	skos:exactMatch	miriam:biotools	sssom:HumanCurated
 bioregistry:biotools	skos:exactMatch	n2t:biotools	sssom:HumanCurated
+bioregistry:biotools	skos:exactMatch	re3data:r3d100013668	sssom:HumanCurated
 bioregistry:birnlex	skos:exactMatch	aberowl:BIRNLEX	sssom:HumanCurated
 bioregistry:birnlex	skos:exactMatch	bioportal:BIRNLEX	sssom:HumanCurated
 bioregistry:birnlex	skos:exactMatch	fairsharing:FAIRsharing.jedbbt	sssom:HumanCurated
 bioregistry:biro	skos:exactMatch	fairsharing:FAIRsharing.99da5f	sssom:HumanCurated
 bioregistry:bitbucket	skos:exactMatch	fairsharing:FAIRsharing.fc3431	sssom:HumanCurated
 bioregistry:bitbucket	skos:exactMatch	miriam:bitbucket	sssom:HumanCurated
+bioregistry:bitbucket	skos:exactMatch	re3data:r3d100013478	sssom:HumanCurated
 bioregistry:bitterdb.cpd	skos:exactMatch	biocontext:BITTERDB.CPD	sssom:HumanCurated
 bioregistry:bitterdb.cpd	skos:exactMatch	miriam:bitterdb.cpd	sssom:HumanCurated
 bioregistry:bitterdb.cpd	skos:exactMatch	n2t:bitterdb.cpd	sssom:HumanCurated
@@ -478,6 +497,7 @@ bioregistry:brenda	skos:exactMatch	fairsharing:FAIRsharing.etp533	sssom:HumanCur
 bioregistry:brenda	skos:exactMatch	miriam:brenda	sssom:HumanCurated
 bioregistry:brenda	skos:exactMatch	n2t:brenda	sssom:HumanCurated
 bioregistry:brenda	skos:exactMatch	prefixcommons:brenda	sssom:HumanCurated
+bioregistry:brenda	skos:exactMatch	re3data:r3d100010616	sssom:HumanCurated
 bioregistry:broad	skos:exactMatch	biocontext:BROAD	sssom:HumanCurated
 bioregistry:broad	skos:exactMatch	miriam:broad	sssom:HumanCurated
 bioregistry:broad	skos:exactMatch	n2t:broad	sssom:HumanCurated
@@ -553,6 +573,7 @@ bioregistry:cath	skos:exactMatch	fairsharing:FAIRsharing.xgcyyn	sssom:HumanCurat
 bioregistry:cath	skos:exactMatch	miriam:cath	sssom:HumanCurated
 bioregistry:cath	skos:exactMatch	n2t:cath	sssom:HumanCurated
 bioregistry:cath	skos:exactMatch	prefixcommons:cath	sssom:HumanCurated
+bioregistry:cath	skos:exactMatch	re3data:r3d100012629	sssom:HumanCurated
 bioregistry:cath.domain	skos:exactMatch	biocontext:CATH.DOMAIN	sssom:HumanCurated
 bioregistry:cath.domain	skos:exactMatch	miriam:cath.domain	sssom:HumanCurated
 bioregistry:cath.domain	skos:exactMatch	n2t:cath.domain	sssom:HumanCurated
@@ -623,6 +644,7 @@ bioregistry:cellosaurus	skos:exactMatch	biocontext:CELLOSAURUS	sssom:HumanCurate
 bioregistry:cellosaurus	skos:exactMatch	fairsharing:FAIRsharing.hkk309	sssom:HumanCurated
 bioregistry:cellosaurus	skos:exactMatch	miriam:cellosaurus	sssom:HumanCurated
 bioregistry:cellosaurus	skos:exactMatch	n2t:cellosaurus	sssom:HumanCurated
+bioregistry:cellosaurus	skos:exactMatch	re3data:r3d100013293	sssom:HumanCurated
 bioregistry:cellosaurus	skos:exactMatch	wikidata:P3289	sssom:HumanCurated
 bioregistry:cellrepo	skos:exactMatch	miriam:cellrepo	sssom:HumanCurated
 bioregistry:ceph	skos:exactMatch	aberowl:CEPH	sssom:HumanCurated
@@ -638,6 +660,7 @@ bioregistry:cgd	skos:exactMatch	miriam:cgd	sssom:HumanCurated
 bioregistry:cgd	skos:exactMatch	n2t:cgd	sssom:HumanCurated
 bioregistry:cgd	skos:exactMatch	prefixcommons:cgd	sssom:HumanCurated
 bioregistry:cgnc	skos:exactMatch	prefixcommons:cgnc	sssom:HumanCurated
+bioregistry:cgnc	skos:exactMatch	re3data:r3d100012429	sssom:HumanCurated
 bioregistry:cgsc	skos:exactMatch	biocontext:CGSC	sssom:HumanCurated
 bioregistry:cgsc	skos:exactMatch	fairsharing:FAIRsharing.1tbrdz	sssom:HumanCurated
 bioregistry:cgsc	skos:exactMatch	miriam:cgsc	sssom:HumanCurated
@@ -657,6 +680,7 @@ bioregistry:chebi	skos:exactMatch	obofoundry:chebi	sssom:HumanCurated
 bioregistry:chebi	skos:exactMatch	ols:chebi	sssom:HumanCurated
 bioregistry:chebi	skos:exactMatch	ontobee:CHEBI	sssom:HumanCurated
 bioregistry:chebi	skos:exactMatch	prefixcommons:chebi	sssom:HumanCurated
+bioregistry:chebi	skos:exactMatch	re3data:r3d100012626	sssom:HumanCurated
 bioregistry:chebi	skos:exactMatch	wikidata:P683	sssom:HumanCurated
 bioregistry:chebi	bioregistry.schema:0000018	bioregistry:cdno	sssom:HumanCurated
 bioregistry:chebi	bioregistry.schema:0000018	bioregistry:chiro	sssom:HumanCurated
@@ -679,6 +703,7 @@ bioregistry:chembl	skos:exactMatch	cheminf:000412	sssom:HumanCurated
 bioregistry:chembl	skos:exactMatch	fairsharing:FAIRsharing.m3jtpg	sssom:HumanCurated
 bioregistry:chembl	skos:exactMatch	miriam:chembl	sssom:HumanCurated
 bioregistry:chembl	skos:exactMatch	prefixcommons:chembl	sssom:HumanCurated
+bioregistry:chembl	skos:exactMatch	re3data:r3d100010539	sssom:HumanCurated
 bioregistry:chembl.cell	bfo:0000050	bioregistry:chembl	sssom:HumanCurated
 bioregistry:chembl.compound	skos:exactMatch	biocontext:CHEMBL.COMPOUND	sssom:HumanCurated
 bioregistry:chembl.compound	skos:exactMatch	miriam:chembl.compound	sssom:HumanCurated
@@ -713,6 +738,7 @@ bioregistry:chemspider	skos:exactMatch	fairsharing:FAIRsharing.96f3gm	sssom:Huma
 bioregistry:chemspider	skos:exactMatch	miriam:chemspider	sssom:HumanCurated
 bioregistry:chemspider	skos:exactMatch	n2t:chemspider	sssom:HumanCurated
 bioregistry:chemspider	skos:exactMatch	prefixcommons:chemspider	sssom:HumanCurated
+bioregistry:chemspider	skos:exactMatch	re3data:r3d100010205	sssom:HumanCurated
 bioregistry:chemspider	skos:exactMatch	wikidata:P661	sssom:HumanCurated
 bioregistry:chickenqtldb	skos:exactMatch	biocontext:CHICKENQTLDB	sssom:HumanCurated
 bioregistry:chickenqtldb	skos:exactMatch	miriam:chickenqtldb	sssom:HumanCurated
@@ -804,6 +830,7 @@ bioregistry:clinvar	skos:exactMatch	biolink:CLINVAR	sssom:HumanCurated
 bioregistry:clinvar	skos:exactMatch	fairsharing:FAIRsharing.wx5r6f	sssom:HumanCurated
 bioregistry:clinvar	skos:exactMatch	miriam:clinvar	sssom:HumanCurated
 bioregistry:clinvar	skos:exactMatch	n2t:clinvar	sssom:HumanCurated
+bioregistry:clinvar	skos:exactMatch	re3data:r3d100013331	sssom:HumanCurated
 bioregistry:clinvar	skos:exactMatch	wikidata:P1929	sssom:HumanCurated
 bioregistry:clinvar.record	skos:exactMatch	biocontext:CLINVAR.RECORD	sssom:HumanCurated
 bioregistry:clinvar.record	skos:exactMatch	miriam:clinvar.record	sssom:HumanCurated
@@ -1002,6 +1029,7 @@ bioregistry:come	skos:exactMatch	prefixcommons:come	sssom:HumanCurated
 bioregistry:complexportal	skos:exactMatch	biocontext:COMPLEXPORTAL	sssom:HumanCurated
 bioregistry:complexportal	skos:exactMatch	miriam:complexportal	sssom:HumanCurated
 bioregistry:complexportal	skos:exactMatch	n2t:complexportal	sssom:HumanCurated
+bioregistry:complexportal	skos:exactMatch	re3data:r3d100013295	sssom:HumanCurated
 bioregistry:complexportal	skos:exactMatch	wikidata:P7718	sssom:HumanCurated
 bioregistry:comptox	skos:exactMatch	biocontext:COMPTOX	sssom:HumanCurated
 bioregistry:comptox	skos:exactMatch	miriam:comptox	sssom:HumanCurated
@@ -1021,6 +1049,7 @@ bioregistry:coriell	skos:exactMatch	miriam:coriell	sssom:HumanCurated
 bioregistry:coriell	skos:exactMatch	n2t:coriell	sssom:HumanCurated
 bioregistry:corrdb	skos:exactMatch	fairsharing:FAIRsharing.IziuCK	sssom:HumanCurated
 bioregistry:corrdb	skos:exactMatch	miriam:corrdb	sssom:HumanCurated
+bioregistry:corrdb	skos:exactMatch	re3data:r3d100011496	sssom:HumanCurated
 bioregistry:corum	skos:exactMatch	biocontext:CORUM	sssom:HumanCurated
 bioregistry:corum	skos:exactMatch	fairsharing:FAIRsharing.ohbpNw	sssom:HumanCurated
 bioregistry:corum	skos:exactMatch	miriam:corum	sssom:HumanCurated
@@ -1064,6 +1093,7 @@ bioregistry:cryptodb	skos:exactMatch	fairsharing:FAIRsharing.t3nprm	sssom:HumanC
 bioregistry:cryptodb	skos:exactMatch	miriam:cryptodb	sssom:HumanCurated
 bioregistry:cryptodb	skos:exactMatch	n2t:cryptodb	sssom:HumanCurated
 bioregistry:cryptodb	skos:exactMatch	prefixcommons:cryptodb	sssom:HumanCurated
+bioregistry:cryptodb	skos:exactMatch	re3data:r3d100012265	sssom:HumanCurated
 bioregistry:csa	skos:exactMatch	biocontext:CSA	sssom:HumanCurated
 bioregistry:csa	skos:exactMatch	fairsharing:FAIRsharing.2ajtcf	sssom:HumanCurated
 bioregistry:csa	skos:exactMatch	miriam:csa	sssom:HumanCurated
@@ -1131,6 +1161,7 @@ bioregistry:dailymed	skos:exactMatch	miriam:dailymed	sssom:HumanCurated
 bioregistry:dailymed	skos:exactMatch	n2t:dailymed	sssom:HumanCurated
 bioregistry:dailymed	skos:exactMatch	prefixcommons:dailymed	sssom:HumanCurated
 bioregistry:dandi	skos:exactMatch	miriam:dandi	sssom:HumanCurated
+bioregistry:dandi	skos:exactMatch	re3data:r3d100013638	sssom:HumanCurated
 bioregistry:darc	skos:exactMatch	biocontext:DARC	sssom:HumanCurated
 bioregistry:darc	skos:exactMatch	fairsharing:FAIRsharing.evfe2s	sssom:HumanCurated
 bioregistry:darc	skos:exactMatch	miriam:darc	sssom:HumanCurated
@@ -1178,6 +1209,7 @@ bioregistry:dbsnp	skos:exactMatch	fairsharing:FAIRsharing.edxb58	sssom:HumanCura
 bioregistry:dbsnp	skos:exactMatch	miriam:dbsnp	sssom:HumanCurated
 bioregistry:dbsnp	skos:exactMatch	n2t:dbsnp	sssom:HumanCurated
 bioregistry:dbsnp	skos:exactMatch	prefixcommons:dbsnp	sssom:HumanCurated
+bioregistry:dbsnp	skos:exactMatch	re3data:r3d100010652	sssom:HumanCurated
 bioregistry:dc	skos:exactMatch	aberowl:DC	sssom:HumanCurated
 bioregistry:dc	skos:exactMatch	biocontext:dc	sssom:HumanCurated
 bioregistry:dc	skos:exactMatch	bioportal:DC	sssom:HumanCurated
@@ -1221,6 +1253,7 @@ bioregistry:depod	skos:exactMatch	biocontext:DEPOD	sssom:HumanCurated
 bioregistry:depod	skos:exactMatch	fairsharing:FAIRsharing.q9j2e3	sssom:HumanCurated
 bioregistry:depod	skos:exactMatch	miriam:depod	sssom:HumanCurated
 bioregistry:depod	skos:exactMatch	n2t:depod	sssom:HumanCurated
+bioregistry:depod	skos:exactMatch	re3data:r3d100011936	sssom:HumanCurated
 bioregistry:depod	bioregistry.schema:0000011	bioregistry:hgnc.symbol	sssom:HumanCurated
 bioregistry:dermo	skos:exactMatch	aberowl:DERMO	sssom:HumanCurated
 bioregistry:dermo	skos:exactMatch	bioportal:DERMO	sssom:HumanCurated
@@ -1240,6 +1273,7 @@ bioregistry:dicom	skos:exactMatch	ols:dicom	sssom:HumanCurated
 bioregistry:dictybase	skos:exactMatch	biocontext:dictyBase	sssom:HumanCurated
 bioregistry:dictybase	skos:exactMatch	fairsharing:FAIRsharing.4shj9c	sssom:HumanCurated
 bioregistry:dictybase	skos:exactMatch	prefixcommons:dictybase	sssom:HumanCurated
+bioregistry:dictybase	skos:exactMatch	re3data:r3d100010586	sssom:HumanCurated
 bioregistry:dictybase.est	skos:exactMatch	biocontext:DICTYBASE.EST	sssom:HumanCurated
 bioregistry:dictybase.est	skos:exactMatch	miriam:dictybase.est	sssom:HumanCurated
 bioregistry:dictybase.est	skos:exactMatch	n2t:dictybase.est	sssom:HumanCurated
@@ -1278,6 +1312,7 @@ bioregistry:disprot	skos:exactMatch	fairsharing:FAIRsharing.dt9z89	sssom:HumanCu
 bioregistry:disprot	skos:exactMatch	miriam:disprot	sssom:HumanCurated
 bioregistry:disprot	skos:exactMatch	n2t:disprot	sssom:HumanCurated
 bioregistry:disprot	skos:exactMatch	prefixcommons:disprot	sssom:HumanCurated
+bioregistry:disprot	skos:exactMatch	re3data:r3d100010561	sssom:HumanCurated
 bioregistry:disprot.region	skos:exactMatch	miriam:disprot.region	sssom:HumanCurated
 bioregistry:dlxb	skos:exactMatch	miriam:dlxb	sssom:HumanCurated
 bioregistry:dlxc	skos:exactMatch	miriam:dlxc	sssom:HumanCurated
@@ -1354,6 +1389,7 @@ bioregistry:drugbank	skos:exactMatch	fairsharing:FAIRsharing.353yat	sssom:HumanC
 bioregistry:drugbank	skos:exactMatch	miriam:drugbank	sssom:HumanCurated
 bioregistry:drugbank	skos:exactMatch	n2t:drugbank	sssom:HumanCurated
 bioregistry:drugbank	skos:exactMatch	prefixcommons:drugbank	sssom:HumanCurated
+bioregistry:drugbank	skos:exactMatch	re3data:r3d100010544	sssom:HumanCurated
 bioregistry:drugbank	skos:exactMatch	wikidata:P715	sssom:HumanCurated
 bioregistry:drugbank.category	bfo:0000050	bioregistry:drugbank	sssom:HumanCurated
 bioregistry:drugbank.salt	skos:exactMatch	biocontext:DRUGBANK.TARGET	sssom:HumanCurated
@@ -1364,6 +1400,7 @@ bioregistry:drugbankv4.target	skos:exactMatch	n2t:drugbankv4.target	sssom:HumanC
 bioregistry:drugbankv4.target	bfo:0000050	bioregistry:drugbank	sssom:HumanCurated
 bioregistry:drugcentral	skos:exactMatch	biolink:DrugCentral	sssom:HumanCurated
 bioregistry:drugcentral	skos:exactMatch	fairsharing:FAIRsharing.3me82d	sssom:HumanCurated
+bioregistry:dsmz	skos:exactMatch	re3data:r3d100010219	sssom:HumanCurated
 bioregistry:dto	skos:exactMatch	aberowl:DTO	sssom:HumanCurated
 bioregistry:dto	skos:exactMatch	bioportal:DTO	sssom:HumanCurated
 bioregistry:dto	skos:exactMatch	fairsharing:FAIRsharing.tke3y2	sssom:HumanCurated
@@ -1378,6 +1415,7 @@ bioregistry:duo	skos:exactMatch	ontobee:DUO	sssom:HumanCurated
 bioregistry:duo	bioregistry.schema:0000018	bioregistry:scdo	sssom:HumanCurated
 bioregistry:duo	bioregistry.schema:0000017	bioregistry:bfo	sssom:HumanCurated
 bioregistry:duo	bioregistry.schema:0000017	bioregistry:iao	sssom:HumanCurated
+bioregistry:eaglei	skos:exactMatch	re3data:r3d100011564	sssom:HumanCurated
 bioregistry:ecao	skos:exactMatch	aberowl:ECAO	sssom:HumanCurated
 bioregistry:ecao	skos:exactMatch	bioportal:ECAO	sssom:HumanCurated
 bioregistry:ecao	skos:exactMatch	obofoundry:ecao	sssom:HumanCurated
@@ -1399,6 +1437,7 @@ bioregistry:echobase	skos:exactMatch	biocontext:ECHOBASE	sssom:HumanCurated
 bioregistry:echobase	skos:exactMatch	miriam:echobase	sssom:HumanCurated
 bioregistry:echobase	skos:exactMatch	n2t:echobase	sssom:HumanCurated
 bioregistry:echobase	skos:exactMatch	prefixcommons:echobase	sssom:HumanCurated
+bioregistry:echobase	skos:exactMatch	re3data:r3d100011646	sssom:HumanCurated
 bioregistry:eco	skos:exactMatch	aberowl:ECO	sssom:HumanCurated
 bioregistry:eco	skos:exactMatch	biocontext:ECO	sssom:HumanCurated
 bioregistry:eco	skos:exactMatch	bioportal:ECO	sssom:HumanCurated
@@ -1431,6 +1470,7 @@ bioregistry:ecogene	skos:exactMatch	fairsharing:FAIRsharing.3q3kvn	sssom:HumanCu
 bioregistry:ecogene	skos:exactMatch	miriam:ecogene	sssom:HumanCurated
 bioregistry:ecogene	skos:exactMatch	n2t:ecogene	sssom:HumanCurated
 bioregistry:ecogene	skos:exactMatch	prefixcommons:ecogene	sssom:HumanCurated
+bioregistry:ecogene	skos:exactMatch	re3data:r3d100010546	sssom:HumanCurated
 bioregistry:ecoliwiki	skos:exactMatch	biocontext:ECOLIWIKI	sssom:HumanCurated
 bioregistry:ecoliwiki	skos:exactMatch	fairsharing:FAIRsharing.tx95wa	sssom:HumanCurated
 bioregistry:ecoliwiki	skos:exactMatch	miriam:ecoliwiki	sssom:HumanCurated
@@ -1555,6 +1595,7 @@ bioregistry:encode	skos:exactMatch	biocontext:ENCODE	sssom:HumanCurated
 bioregistry:encode	skos:exactMatch	fairsharing:FAIRsharing.v0hbjs	sssom:HumanCurated
 bioregistry:encode	skos:exactMatch	miriam:encode	sssom:HumanCurated
 bioregistry:encode	skos:exactMatch	n2t:encode	sssom:HumanCurated
+bioregistry:encode	skos:exactMatch	re3data:r3d100013051	sssom:HumanCurated
 bioregistry:enm	skos:exactMatch	aberowl:ENM	sssom:HumanCurated
 bioregistry:enm	skos:exactMatch	bioportal:ENM	sssom:HumanCurated
 bioregistry:enm	skos:exactMatch	fairsharing:FAIRsharing.2gpf81	sssom:HumanCurated
@@ -1564,22 +1605,26 @@ bioregistry:ensembl	skos:exactMatch	fairsharing:FAIRsharing.fx0mw7	sssom:HumanCu
 bioregistry:ensembl	skos:exactMatch	miriam:ensembl	sssom:HumanCurated
 bioregistry:ensembl	skos:exactMatch	n2t:ensembl	sssom:HumanCurated
 bioregistry:ensembl	skos:exactMatch	prefixcommons:ensembl	sssom:HumanCurated
+bioregistry:ensembl	skos:exactMatch	re3data:r3d100010228	sssom:HumanCurated
 bioregistry:ensembl	skos:exactMatch	wikidata:P594	sssom:HumanCurated
 bioregistry:ensembl.bacteria	skos:exactMatch	biocontext:ENSEMBL.BACTERIA	sssom:HumanCurated
 bioregistry:ensembl.bacteria	skos:exactMatch	fairsharing:FAIRsharing.zsgmvd	sssom:HumanCurated
 bioregistry:ensembl.bacteria	skos:exactMatch	miriam:ensembl.bacteria	sssom:HumanCurated
 bioregistry:ensembl.bacteria	skos:exactMatch	n2t:ensembl.bacteria	sssom:HumanCurated
 bioregistry:ensembl.bacteria	skos:exactMatch	prefixcommons:ensembl.bacteria	sssom:HumanCurated
+bioregistry:ensembl.bacteria	skos:exactMatch	re3data:r3d100011195	sssom:HumanCurated
 bioregistry:ensembl.fungi	skos:exactMatch	biocontext:ENSEMBL.FUNGI	sssom:HumanCurated
 bioregistry:ensembl.fungi	skos:exactMatch	fairsharing:FAIRsharing.bg5xqs	sssom:HumanCurated
 bioregistry:ensembl.fungi	skos:exactMatch	miriam:ensembl.fungi	sssom:HumanCurated
 bioregistry:ensembl.fungi	skos:exactMatch	n2t:ensembl.fungi	sssom:HumanCurated
 bioregistry:ensembl.fungi	skos:exactMatch	prefixcommons:ensembl.fungi	sssom:HumanCurated
+bioregistry:ensembl.fungi	skos:exactMatch	re3data:r3d100011196	sssom:HumanCurated
 bioregistry:ensembl.metazoa	skos:exactMatch	biocontext:ENSEMBL.METAZOA	sssom:HumanCurated
 bioregistry:ensembl.metazoa	skos:exactMatch	fairsharing:FAIRsharing.c23cqq	sssom:HumanCurated
 bioregistry:ensembl.metazoa	skos:exactMatch	miriam:ensembl.metazoa	sssom:HumanCurated
 bioregistry:ensembl.metazoa	skos:exactMatch	n2t:ensembl.metazoa	sssom:HumanCurated
 bioregistry:ensembl.metazoa	skos:exactMatch	prefixcommons:ensembl.metazoa	sssom:HumanCurated
+bioregistry:ensembl.metazoa	skos:exactMatch	re3data:r3d100011198	sssom:HumanCurated
 bioregistry:ensembl.plant	skos:exactMatch	biocontext:ENSEMBL.PLANT	sssom:HumanCurated
 bioregistry:ensembl.plant	skos:exactMatch	miriam:ensembl.plant	sssom:HumanCurated
 bioregistry:ensembl.plant	skos:exactMatch	n2t:ensembl.plant	sssom:HumanCurated
@@ -1591,6 +1636,7 @@ bioregistry:ensembl.protist	skos:exactMatch	prefixcommons:ensembl.protist	sssom:
 bioregistry:ensemblglossary	skos:exactMatch	ols:ensemblglossary	sssom:HumanCurated
 bioregistry:envipath	skos:exactMatch	fairsharing:FAIRsharing.g0c5qn	sssom:HumanCurated
 bioregistry:envipath	skos:exactMatch	miriam:envipath	sssom:HumanCurated
+bioregistry:envipath	skos:exactMatch	re3data:r3d100012715	sssom:HumanCurated
 bioregistry:envo	skos:exactMatch	aberowl:ENVO	sssom:HumanCurated
 bioregistry:envo	skos:exactMatch	agroportal:ENVO	sssom:HumanCurated
 bioregistry:envo	skos:exactMatch	biocontext:ENVO	sssom:HumanCurated
@@ -1631,6 +1677,7 @@ bioregistry:eol	skos:exactMatch	agroportal:EOL	sssom:HumanCurated
 bioregistry:eol	skos:exactMatch	bioportal:EOL	sssom:HumanCurated
 bioregistry:eol	skos:exactMatch	fairsharing:FAIRsharing.w7bw2y	sssom:HumanCurated
 bioregistry:eol	skos:exactMatch	ols:eol	sssom:HumanCurated
+bioregistry:eol	skos:exactMatch	re3data:r3d100011663	sssom:HumanCurated
 bioregistry:eolife	skos:exactMatch	fairsharing:FAIRsharing.3J6NYn	sssom:HumanCurated
 bioregistry:eolife	skos:exactMatch	wikidata:P830	sssom:HumanCurated
 bioregistry:epd	skos:exactMatch	biocontext:EPD	sssom:HumanCurated
@@ -1706,10 +1753,12 @@ bioregistry:facebase	skos:exactMatch	biocontext:FACEBASE	sssom:HumanCurated
 bioregistry:facebase	skos:exactMatch	fairsharing:FAIRsharing.mqvqde	sssom:HumanCurated
 bioregistry:facebase	skos:exactMatch	miriam:facebase	sssom:HumanCurated
 bioregistry:facebase	skos:exactMatch	n2t:facebase	sssom:HumanCurated
+bioregistry:facebase	skos:exactMatch	re3data:r3d100013263	sssom:HumanCurated
 bioregistry:fairsharing	skos:exactMatch	biocontext:FAIRSHARING	sssom:HumanCurated
 bioregistry:fairsharing	skos:exactMatch	fairsharing:FAIRsharing.2abjs5	sssom:HumanCurated
 bioregistry:fairsharing	skos:exactMatch	miriam:fairsharing	sssom:HumanCurated
 bioregistry:fairsharing	skos:exactMatch	n2t:fairsharing	sssom:HumanCurated
+bioregistry:fairsharing	skos:exactMatch	re3data:r3d100010142	sssom:HumanCurated
 bioregistry:faldo	skos:exactMatch	aberowl:FALDO	sssom:HumanCurated
 bioregistry:faldo	skos:exactMatch	agroportal:FALDO	sssom:HumanCurated
 bioregistry:faldo	skos:exactMatch	biocontext:faldo	sssom:HumanCurated
@@ -1774,6 +1823,7 @@ bioregistry:fideo	skos:exactMatch	bioportal:FIDEO	sssom:HumanCurated
 bioregistry:fideo	skos:exactMatch	obofoundry:fideo	sssom:HumanCurated
 bioregistry:fideo	skos:exactMatch	ols:fideo	sssom:HumanCurated
 bioregistry:fideo	skos:exactMatch	ontobee:FIDEO	sssom:HumanCurated
+bioregistry:fishbase.species	skos:exactMatch	re3data:r3d100010912	sssom:HumanCurated
 bioregistry:fishbase.species	skos:exactMatch	wikidata:P938	sssom:HumanCurated
 bioregistry:fivestars	skos:exactMatch	fairsharing:FAIRsharing.6dfe9b	sssom:HumanCurated
 bioregistry:fix	skos:exactMatch	aberowl:FIX	sssom:HumanCurated
@@ -1796,6 +1846,7 @@ bioregistry:flopo	skos:exactMatch	ontobee:FLOPO	sssom:HumanCurated
 bioregistry:flowrepository	skos:exactMatch	fairsharing:FAIRsharing.veg2d6	sssom:HumanCurated
 bioregistry:flowrepository	skos:exactMatch	miriam:flowrepository	sssom:HumanCurated
 bioregistry:flowrepository	skos:exactMatch	n2t:flowrepository	sssom:HumanCurated
+bioregistry:flowrepository	skos:exactMatch	re3data:r3d100011280	sssom:HumanCurated
 bioregistry:flu	skos:exactMatch	aberowl:FLU	sssom:HumanCurated
 bioregistry:flu	skos:exactMatch	biocontext:FLU	sssom:HumanCurated
 bioregistry:flu	skos:exactMatch	bioportal:FLU	sssom:HumanCurated
@@ -1805,6 +1856,7 @@ bioregistry:flybase	skos:exactMatch	fairsharing:FAIRsharing.wrvze3	sssom:HumanCu
 bioregistry:flybase	skos:exactMatch	miriam:fb	sssom:HumanCurated
 bioregistry:flybase	skos:exactMatch	n2t:fb	sssom:HumanCurated
 bioregistry:flybase	skos:exactMatch	prefixcommons:flybase	sssom:HumanCurated
+bioregistry:flybase	skos:exactMatch	re3data:r3d100010591	sssom:HumanCurated
 bioregistry:flybase	skos:exactMatch	wikidata:P3852	sssom:HumanCurated
 bioregistry:fma	skos:exactMatch	aberowl:FMA	sssom:HumanCurated
 bioregistry:fma	skos:exactMatch	biocontext:FMA	sssom:HumanCurated
@@ -1832,6 +1884,7 @@ bioregistry:foodb.compound	skos:exactMatch	biocontext:FOODB.COMPOUND	sssom:Human
 bioregistry:foodb.compound	skos:exactMatch	biolink:foodb.compound	sssom:HumanCurated
 bioregistry:foodb.compound	skos:exactMatch	miriam:foodb.compound	sssom:HumanCurated
 bioregistry:foodb.compound	skos:exactMatch	n2t:foodb.compound	sssom:HumanCurated
+bioregistry:foodb.compound	skos:exactMatch	re3data:r3d100012152	sssom:HumanCurated
 bioregistry:foodb.food	skos:exactMatch	biolink:foodb.food	sssom:HumanCurated
 bioregistry:foodon	skos:exactMatch	aberowl:FOODON	sssom:HumanCurated
 bioregistry:foodon	skos:exactMatch	agroportal:FOODON	sssom:HumanCurated
@@ -1901,6 +1954,7 @@ bioregistry:fungidb	skos:exactMatch	biocontext:FUNGIDB	sssom:HumanCurated
 bioregistry:fungidb	skos:exactMatch	fairsharing:FAIRsharing.xf30yc	sssom:HumanCurated
 bioregistry:fungidb	skos:exactMatch	miriam:fungidb	sssom:HumanCurated
 bioregistry:fungidb	skos:exactMatch	n2t:fungidb	sssom:HumanCurated
+bioregistry:fungidb	skos:exactMatch	re3data:r3d100011906	sssom:HumanCurated
 bioregistry:fungorum	skos:exactMatch	wikidata:P1391	sssom:HumanCurated
 bioregistry:fyeco	skos:exactMatch	biolink:FYECO	sssom:HumanCurated
 bioregistry:fypo	skos:exactMatch	aberowl:FYPO	sssom:HumanCurated
@@ -1956,16 +2010,19 @@ bioregistry:genbank	skos:exactMatch	biocontext:GenBank	sssom:HumanCurated
 bioregistry:genbank	skos:exactMatch	cheminf:000304	sssom:HumanCurated
 bioregistry:genbank	skos:exactMatch	fairsharing:FAIRsharing.9kahy4	sssom:HumanCurated
 bioregistry:genbank	skos:exactMatch	prefixcommons:genbank	sssom:HumanCurated
+bioregistry:genbank	skos:exactMatch	re3data:r3d100010528	sssom:HumanCurated
 bioregistry:genecards	skos:exactMatch	biocontext:GENECARDS	sssom:HumanCurated
 bioregistry:genecards	skos:exactMatch	fairsharing:FAIRsharing.g7jbvn	sssom:HumanCurated
 bioregistry:genecards	skos:exactMatch	miriam:genecards	sssom:HumanCurated
 bioregistry:genecards	skos:exactMatch	n2t:genecards	sssom:HumanCurated
 bioregistry:genecards	skos:exactMatch	prefixcommons:genecards	sssom:HumanCurated
+bioregistry:genecards	skos:exactMatch	re3data:r3d100012015	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	biocontext:GENEDB	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	fairsharing:FAIRsharing.j7esqq	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	miriam:genedb	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	n2t:genedb	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	prefixcommons:genedb	sssom:HumanCurated
+bioregistry:genedb	skos:exactMatch	re3data:r3d100010626	sssom:HumanCurated
 bioregistry:genedb	skos:exactMatch	wikidata:P3382	sssom:HumanCurated
 bioregistry:genefarm	skos:exactMatch	biocontext:GENEFARM	sssom:HumanCurated
 bioregistry:genefarm	skos:exactMatch	fairsharing:FAIRsharing.2mayq0	sssom:HumanCurated
@@ -2017,6 +2074,7 @@ bioregistry:geogeo	skos:exactMatch	obofoundry:geo	sssom:HumanCurated
 bioregistry:geogeo	skos:exactMatch	ols:geo	sssom:HumanCurated
 bioregistry:geogeo	skos:exactMatch	ontobee:GEO	sssom:HumanCurated
 bioregistry:geonames	skos:exactMatch	fairsharing:FAIRsharing.56a0Uj	sssom:HumanCurated
+bioregistry:geonames	skos:exactMatch	re3data:r3d100010245	sssom:HumanCurated
 bioregistry:gexo	skos:exactMatch	aberowl:GEXO	sssom:HumanCurated
 bioregistry:gexo	skos:exactMatch	bioportal:GEXO	sssom:HumanCurated
 bioregistry:gexo	skos:exactMatch	fairsharing:FAIRsharing.3e0sn4	sssom:HumanCurated
@@ -2026,8 +2084,10 @@ bioregistry:giardiadb	skos:exactMatch	fairsharing:FAIRsharing.e7skwg	sssom:Human
 bioregistry:giardiadb	skos:exactMatch	miriam:giardiadb	sssom:HumanCurated
 bioregistry:giardiadb	skos:exactMatch	n2t:giardiadb	sssom:HumanCurated
 bioregistry:giardiadb	skos:exactMatch	prefixcommons:giardiadb	sssom:HumanCurated
+bioregistry:giardiadb	skos:exactMatch	re3data:r3d100012458	sssom:HumanCurated
 bioregistry:github	skos:exactMatch	fairsharing:FAIRsharing.c55d5e	sssom:HumanCurated
 bioregistry:github	skos:exactMatch	miriam:github	sssom:HumanCurated
+bioregistry:github	skos:exactMatch	re3data:r3d100010375	sssom:HumanCurated
 bioregistry:gitlab	skos:exactMatch	fairsharing:FAIRsharing.530e61	sssom:HumanCurated
 bioregistry:gitlab	skos:exactMatch	miriam:gitlab	sssom:HumanCurated
 bioregistry:glida.gpcr	skos:exactMatch	biocontext:GLIDA.GPCR	sssom:HumanCurated
@@ -2044,6 +2104,7 @@ bioregistry:glycomedb	skos:exactMatch	fairsharing:FAIRsharing.k5k0yh	sssom:Human
 bioregistry:glycomedb	skos:exactMatch	miriam:glycomedb	sssom:HumanCurated
 bioregistry:glycomedb	skos:exactMatch	n2t:glycomedb	sssom:HumanCurated
 bioregistry:glycomedb	skos:exactMatch	prefixcommons:glycomedb	sssom:HumanCurated
+bioregistry:glycomedb	skos:exactMatch	re3data:r3d100011527	sssom:HumanCurated
 bioregistry:glycomedb	bioregistry.schema:0000016	bioregistry:glytoucan	sssom:HumanCurated
 bioregistry:glyconavi	skos:exactMatch	fairsharing:FAIRsharing.wvp1t7	sssom:HumanCurated
 bioregistry:glyconavi	skos:exactMatch	miriam:glyconavi	sssom:HumanCurated
@@ -2053,6 +2114,7 @@ bioregistry:glygen	skos:exactMatch	fairsharing:FAIRsharing.aI1J5W	sssom:HumanCur
 bioregistry:glytoucan	skos:exactMatch	biocontext:GLYTOUCAN	sssom:HumanCurated
 bioregistry:glytoucan	skos:exactMatch	miriam:glytoucan	sssom:HumanCurated
 bioregistry:glytoucan	skos:exactMatch	n2t:glytoucan	sssom:HumanCurated
+bioregistry:glytoucan	skos:exactMatch	re3data:r3d100012388	sssom:HumanCurated
 bioregistry:gmd	skos:exactMatch	biocontext:GMD	sssom:HumanCurated
 bioregistry:gmd	skos:exactMatch	fairsharing:FAIRsharing.jykmkw	sssom:HumanCurated
 bioregistry:gmd	skos:exactMatch	miriam:gmd	sssom:HumanCurated
@@ -2079,6 +2141,7 @@ bioregistry:gnpis	skos:exactMatch	biocontext:GNPIS	sssom:HumanCurated
 bioregistry:gnpis	skos:exactMatch	fairsharing:FAIRsharing.dw22y3	sssom:HumanCurated
 bioregistry:gnpis	skos:exactMatch	miriam:gnpis	sssom:HumanCurated
 bioregistry:gnpis	skos:exactMatch	n2t:gnpis	sssom:HumanCurated
+bioregistry:gnpis	skos:exactMatch	re3data:r3d100012647	sssom:HumanCurated
 bioregistry:go	skos:exactMatch	aberowl:GO	sssom:HumanCurated
 bioregistry:go	skos:exactMatch	agroportal:GO	sssom:HumanCurated
 bioregistry:go	skos:exactMatch	biocontext:GO	sssom:HumanCurated
@@ -2161,6 +2224,7 @@ bioregistry:greengenes	skos:exactMatch	fairsharing:FAIRsharing.bpxgb6	sssom:Huma
 bioregistry:greengenes	skos:exactMatch	miriam:greengenes	sssom:HumanCurated
 bioregistry:greengenes	skos:exactMatch	n2t:greengenes	sssom:HumanCurated
 bioregistry:greengenes	skos:exactMatch	prefixcommons:greengenes	sssom:HumanCurated
+bioregistry:greengenes	skos:exactMatch	re3data:r3d100010549	sssom:HumanCurated
 bioregistry:grid	skos:exactMatch	biocontext:GRID	sssom:HumanCurated
 bioregistry:grid	skos:exactMatch	fairsharing:FAIRsharing.0pUMYW	sssom:HumanCurated
 bioregistry:grid	skos:exactMatch	miriam:grid	sssom:HumanCurated
@@ -2191,6 +2255,7 @@ bioregistry:gudmap	skos:exactMatch	biocontext:GUDMAP	sssom:HumanCurated
 bioregistry:gudmap	skos:exactMatch	fairsharing:FAIRsharing.910c39	sssom:HumanCurated
 bioregistry:gudmap	skos:exactMatch	miriam:gudmap	sssom:HumanCurated
 bioregistry:gudmap	skos:exactMatch	n2t:gudmap	sssom:HumanCurated
+bioregistry:gudmap	skos:exactMatch	re3data:r3d100012193	sssom:HumanCurated
 bioregistry:gwascentral.marker	skos:exactMatch	biocontext:GWASCENTRAL.MARKER	sssom:HumanCurated
 bioregistry:gwascentral.marker	skos:exactMatch	miriam:gwascentral.marker	sssom:HumanCurated
 bioregistry:gwascentral.marker	skos:exactMatch	n2t:gwascentral.marker	sssom:HumanCurated
@@ -2337,6 +2402,7 @@ bioregistry:hprd	skos:exactMatch	prefixcommons:hprd	sssom:HumanCurated
 bioregistry:hpscreg	skos:exactMatch	fairsharing:FAIRsharing.7C0aVE	sssom:HumanCurated
 bioregistry:hpscreg	skos:exactMatch	miriam:hpscreg	sssom:HumanCurated
 bioregistry:hpscreg	skos:exactMatch	n2t:hpscreg	sssom:HumanCurated
+bioregistry:hpscreg	skos:exactMatch	re3data:r3d100012863	sssom:HumanCurated
 bioregistry:hsapdv	skos:exactMatch	aberowl:HSAPDV	sssom:HumanCurated
 bioregistry:hsapdv	skos:exactMatch	biocontext:HSAPDV	sssom:HumanCurated
 bioregistry:hsapdv	skos:exactMatch	biolink:HsapDv	sssom:HumanCurated
@@ -2488,6 +2554,7 @@ bioregistry:imex	skos:exactMatch	biocontext:IMEX	sssom:HumanCurated
 bioregistry:imex	skos:exactMatch	miriam:imex	sssom:HumanCurated
 bioregistry:imex	skos:exactMatch	n2t:imex	sssom:HumanCurated
 bioregistry:imex	skos:exactMatch	prefixcommons:imex	sssom:HumanCurated
+bioregistry:imex	skos:exactMatch	re3data:r3d100010669	sssom:HumanCurated
 bioregistry:img.gene	skos:exactMatch	biocontext:IMG.GENE	sssom:HumanCurated
 bioregistry:img.gene	skos:exactMatch	miriam:img.gene	sssom:HumanCurated
 bioregistry:img.gene	skos:exactMatch	n2t:img.gene	sssom:HumanCurated
@@ -2548,6 +2615,7 @@ bioregistry:intact	skos:exactMatch	fairsharing:FAIRsharing.d05nwx	sssom:HumanCur
 bioregistry:intact	skos:exactMatch	miriam:intact	sssom:HumanCurated
 bioregistry:intact	skos:exactMatch	n2t:intact	sssom:HumanCurated
 bioregistry:intact	skos:exactMatch	prefixcommons:intact	sssom:HumanCurated
+bioregistry:intact	skos:exactMatch	re3data:r3d100010671	sssom:HumanCurated
 bioregistry:intact.molecule	skos:exactMatch	biocontext:INTACT.MOLECULE	sssom:HumanCurated
 bioregistry:intact.molecule	skos:exactMatch	miriam:intact.molecule	sssom:HumanCurated
 bioregistry:intact.molecule	skos:exactMatch	n2t:intact.molecule	sssom:HumanCurated
@@ -2560,6 +2628,7 @@ bioregistry:interpro	skos:exactMatch	miriam:interpro	sssom:HumanCurated
 bioregistry:interpro	skos:exactMatch	n2t:interpro	sssom:HumanCurated
 bioregistry:interpro	skos:exactMatch	obofoundry:ipr	sssom:HumanCurated
 bioregistry:interpro	skos:exactMatch	prefixcommons:interpro	sssom:HumanCurated
+bioregistry:interpro	skos:exactMatch	re3data:r3d100010798	sssom:HumanCurated
 bioregistry:interpro	skos:exactMatch	wikidata:P2926	sssom:HumanCurated
 bioregistry:ird.segment	skos:exactMatch	biocontext:IRD.SEGMENT	sssom:HumanCurated
 bioregistry:ird.segment	skos:exactMatch	miriam:ird.segment	sssom:HumanCurated
@@ -2570,6 +2639,7 @@ bioregistry:irefweb	skos:exactMatch	fairsharing:FAIRsharing.t31wcb	sssom:HumanCu
 bioregistry:irefweb	skos:exactMatch	miriam:irefweb	sssom:HumanCurated
 bioregistry:irefweb	skos:exactMatch	n2t:irefweb	sssom:HumanCurated
 bioregistry:irefweb	skos:exactMatch	prefixcommons:irefweb	sssom:HumanCurated
+bioregistry:irefweb	skos:exactMatch	re3data:r3d100012725	sssom:HumanCurated
 bioregistry:isbn	skos:exactMatch	biocontext:ISBN-13	sssom:HumanCurated
 bioregistry:isbn	skos:exactMatch	biolink:isbn	sssom:HumanCurated
 bioregistry:isbn	skos:exactMatch	miriam:isbn	sssom:HumanCurated
@@ -2588,6 +2658,7 @@ bioregistry:issn	skos:exactMatch	biolink:issn	sssom:HumanCurated
 bioregistry:issn	skos:exactMatch	miriam:issn	sssom:HumanCurated
 bioregistry:issn	skos:exactMatch	n2t:issn	sssom:HumanCurated
 bioregistry:itis	skos:exactMatch	fairsharing:FAIRsharing.t19hpa	sssom:HumanCurated
+bioregistry:itis	skos:exactMatch	re3data:r3d100011213	sssom:HumanCurated
 bioregistry:itis	skos:exactMatch	wikidata:P815	sssom:HumanCurated
 bioregistry:ito	skos:exactMatch	aberowl:ITO	sssom:HumanCurated
 bioregistry:ito	skos:exactMatch	bioportal:ITO	sssom:HumanCurated
@@ -2631,6 +2702,7 @@ bioregistry:jws	skos:exactMatch	n2t:jws	sssom:HumanCurated
 bioregistry:jws	skos:exactMatch	prefixcommons:jws	sssom:HumanCurated
 bioregistry:kaggle	skos:exactMatch	miriam:kaggle	sssom:HumanCurated
 bioregistry:kaggle	skos:exactMatch	n2t:kaggle	sssom:HumanCurated
+bioregistry:kaggle	skos:exactMatch	re3data:r3d100012705	sssom:HumanCurated
 bioregistry:kegg	skos:exactMatch	biocontext:KEGG	sssom:HumanCurated
 bioregistry:kegg	skos:exactMatch	cheminf:000409	sssom:HumanCurated
 bioregistry:kegg	skos:exactMatch	miriam:kegg	sssom:HumanCurated
@@ -2749,6 +2821,7 @@ bioregistry:licebase	skos:exactMatch	biocontext:LICEBASE	sssom:HumanCurated
 bioregistry:licebase	skos:exactMatch	fairsharing:FAIRsharing.c7w81a	sssom:HumanCurated
 bioregistry:licebase	skos:exactMatch	miriam:licebase	sssom:HumanCurated
 bioregistry:licebase	skos:exactMatch	n2t:licebase	sssom:HumanCurated
+bioregistry:licebase	skos:exactMatch	re3data:r3d100013547	sssom:HumanCurated
 bioregistry:ligandbook	skos:exactMatch	miriam:ligandbook	sssom:HumanCurated
 bioregistry:ligandbook	skos:exactMatch	n2t:ligandbook	sssom:HumanCurated
 bioregistry:ligandbox	skos:exactMatch	biocontext:LIGANDBOX	sssom:HumanCurated
@@ -2823,6 +2896,7 @@ bioregistry:maizegdb.locus	skos:exactMatch	fairsharing:FAIRsharing.aq280w	sssom:
 bioregistry:maizegdb.locus	skos:exactMatch	miriam:maizegdb.locus	sssom:HumanCurated
 bioregistry:maizegdb.locus	skos:exactMatch	n2t:maizegdb.locus	sssom:HumanCurated
 bioregistry:maizegdb.locus	skos:exactMatch	prefixcommons:maizegdb	sssom:HumanCurated
+bioregistry:maizegdb.locus	skos:exactMatch	re3data:r3d100010795	sssom:HumanCurated
 bioregistry:mamo	skos:exactMatch	aberowl:MAMO	sssom:HumanCurated
 bioregistry:mamo	skos:exactMatch	biocontext:MAMO	sssom:HumanCurated
 bioregistry:mamo	skos:exactMatch	bioportal:MAMO	sssom:HumanCurated
@@ -2850,6 +2924,7 @@ bioregistry:mat	skos:exactMatch	bioportal:MAT	sssom:HumanCurated
 bioregistry:mat	skos:exactMatch	obofoundry:mat	sssom:HumanCurated
 bioregistry:matrixdb	skos:exactMatch	fairsharing:FAIRsharing.91yrz6	sssom:HumanCurated
 bioregistry:matrixdb	skos:exactMatch	prefixcommons:matrixdb	sssom:HumanCurated
+bioregistry:matrixdb	skos:exactMatch	re3data:r3d100010672	sssom:HumanCurated
 bioregistry:matrixdb	bioregistry.schema:0000018	bioregistry:complexportal	sssom:HumanCurated
 bioregistry:matrixdb.association	skos:exactMatch	biocontext:MATRIXDB.ASSOCIATION	sssom:HumanCurated
 bioregistry:matrixdb.association	skos:exactMatch	miriam:matrixdb.association	sssom:HumanCurated
@@ -2936,12 +3011,14 @@ bioregistry:mesh.2013	skos:exactMatch	n2t:mesh.2013	sssom:HumanCurated
 bioregistry:metabolights	skos:exactMatch	biocontext:METABOLIGHTS	sssom:HumanCurated
 bioregistry:metabolights	skos:exactMatch	miriam:metabolights	sssom:HumanCurated
 bioregistry:metabolights	skos:exactMatch	n2t:metabolights	sssom:HumanCurated
+bioregistry:metabolights	skos:exactMatch	re3data:r3d100011556	sssom:HumanCurated
 bioregistry:metabolights	skos:exactMatch	wikidata:P3890	sssom:HumanCurated
 bioregistry:metacyc.compound	skos:exactMatch	biocontext:METACYC.COMPOUND	sssom:HumanCurated
 bioregistry:metacyc.compound	skos:exactMatch	biolink:MetaCyc	sssom:HumanCurated
 bioregistry:metacyc.compound	skos:exactMatch	fairsharing:FAIRsharing.yytevr	sssom:HumanCurated
 bioregistry:metacyc.compound	skos:exactMatch	miriam:metacyc.compound	sssom:HumanCurated
 bioregistry:metacyc.compound	skos:exactMatch	n2t:metacyc.compound	sssom:HumanCurated
+bioregistry:metacyc.compound	skos:exactMatch	re3data:r3d100011294	sssom:HumanCurated
 bioregistry:metacyc.reaction	skos:exactMatch	biocontext:METACYC.REACTION	sssom:HumanCurated
 bioregistry:metacyc.reaction	skos:exactMatch	biolink:metacyc.reaction	sssom:HumanCurated
 bioregistry:metacyc.reaction	skos:exactMatch	miriam:metacyc.reaction	sssom:HumanCurated
@@ -2959,6 +3036,7 @@ bioregistry:metanetx.reaction	skos:exactMatch	n2t:metanetx.reaction	sssom:HumanC
 bioregistry:metlin	skos:exactMatch	biocontext:METLIN	sssom:HumanCurated
 bioregistry:metlin	skos:exactMatch	miriam:metlin	sssom:HumanCurated
 bioregistry:metlin	skos:exactMatch	n2t:metlin	sssom:HumanCurated
+bioregistry:metlin	skos:exactMatch	re3data:r3d100012311	sssom:HumanCurated
 bioregistry:mex	skos:exactMatch	biocontext:MEX	sssom:HumanCurated
 bioregistry:mex	skos:exactMatch	miriam:mex	sssom:HumanCurated
 bioregistry:mex	skos:exactMatch	n2t:mex	sssom:HumanCurated
@@ -3036,6 +3114,7 @@ bioregistry:microscope	skos:exactMatch	biocontext:MICROSCOPE	sssom:HumanCurated
 bioregistry:microscope	skos:exactMatch	fairsharing:FAIRsharing.3t5qc3	sssom:HumanCurated
 bioregistry:microscope	skos:exactMatch	miriam:microscope	sssom:HumanCurated
 bioregistry:microscope	skos:exactMatch	n2t:microscope	sssom:HumanCurated
+bioregistry:microscope	skos:exactMatch	re3data:r3d100012928	sssom:HumanCurated
 bioregistry:microsporidia	skos:exactMatch	biocontext:MICROSPORIDIA	sssom:HumanCurated
 bioregistry:microsporidia	skos:exactMatch	miriam:microsporidia	sssom:HumanCurated
 bioregistry:microsporidia	skos:exactMatch	n2t:microsporidia	sssom:HumanCurated
@@ -3067,6 +3146,7 @@ bioregistry:mirbase	skos:exactMatch	fairsharing:FAIRsharing.hmgte8	sssom:HumanCu
 bioregistry:mirbase	skos:exactMatch	miriam:mirbase	sssom:HumanCurated
 bioregistry:mirbase	skos:exactMatch	n2t:mirbase	sssom:HumanCurated
 bioregistry:mirbase	skos:exactMatch	prefixcommons:mirbase	sssom:HumanCurated
+bioregistry:mirbase	skos:exactMatch	re3data:r3d100010566	sssom:HumanCurated
 bioregistry:mirbase	skos:exactMatch	wikidata:P2870	sssom:HumanCurated
 bioregistry:mirbase.mature	skos:exactMatch	biocontext:MIRBASE.MATURE	sssom:HumanCurated
 bioregistry:mirbase.mature	skos:exactMatch	miriam:mirbase.mature	sssom:HumanCurated
@@ -3171,6 +3251,7 @@ bioregistry:modeldb	skos:exactMatch	fairsharing:FAIRsharing.5rb3fk	sssom:HumanCu
 bioregistry:modeldb	skos:exactMatch	miriam:modeldb	sssom:HumanCurated
 bioregistry:modeldb	skos:exactMatch	n2t:modeldb	sssom:HumanCurated
 bioregistry:modeldb	skos:exactMatch	prefixcommons:modeldb	sssom:HumanCurated
+bioregistry:modeldb	skos:exactMatch	re3data:r3d100011330	sssom:HumanCurated
 bioregistry:molbase	skos:exactMatch	biocontext:MOLBASE	sssom:HumanCurated
 bioregistry:molbase	skos:exactMatch	miriam:molbase	sssom:HumanCurated
 bioregistry:molbase	skos:exactMatch	n2t:molbase	sssom:HumanCurated
@@ -3281,6 +3362,7 @@ bioregistry:mycobank	skos:exactMatch	fairsharing:FAIRsharing.v8se8r	sssom:HumanC
 bioregistry:mycobank	skos:exactMatch	miriam:mycobank	sssom:HumanCurated
 bioregistry:mycobank	skos:exactMatch	n2t:mycobank	sssom:HumanCurated
 bioregistry:mycobank	skos:exactMatch	prefixcommons:mycobank	sssom:HumanCurated
+bioregistry:mycobank	skos:exactMatch	re3data:r3d100011222	sssom:HumanCurated
 bioregistry:mzspec	skos:exactMatch	biocontext:MZSPEC	sssom:HumanCurated
 bioregistry:mzspec	skos:exactMatch	miriam:mzspec	sssom:HumanCurated
 bioregistry:mzspec	skos:exactMatch	n2t:mzspec	sssom:HumanCurated
@@ -3302,6 +3384,7 @@ bioregistry:nasc	skos:exactMatch	fairsharing:FAIRsharing.2sqcxs	sssom:HumanCurat
 bioregistry:nasc	skos:exactMatch	miriam:nasc	sssom:HumanCurated
 bioregistry:nasc	skos:exactMatch	n2t:nasc	sssom:HumanCurated
 bioregistry:nasc	skos:exactMatch	prefixcommons:nasc	sssom:HumanCurated
+bioregistry:nasc	skos:exactMatch	re3data:r3d100010906	sssom:HumanCurated
 bioregistry:nbn	skos:exactMatch	biocontext:NBN	sssom:HumanCurated
 bioregistry:nbn	skos:exactMatch	miriam:nbn	sssom:HumanCurated
 bioregistry:nbn	skos:exactMatch	n2t:nbn	sssom:HumanCurated
@@ -3324,18 +3407,22 @@ bioregistry:ncats.bioplanet	skos:exactMatch	biolink:ncats.bioplanet	sssom:HumanC
 bioregistry:ncats.drug	skos:exactMatch	biolink:ncats.drug	sssom:HumanCurated
 bioregistry:ncbi.assembly	skos:exactMatch	biocontext:NCBIAssembly	sssom:HumanCurated
 bioregistry:ncbi.assembly	skos:exactMatch	miriam:assembly	sssom:HumanCurated
+bioregistry:ncbi.assembly	skos:exactMatch	re3data:r3d100012688	sssom:HumanCurated
 bioregistry:ncbi.genome	skos:exactMatch	biocontext:NCBIGenome	sssom:HumanCurated
+bioregistry:ncbi.genome	skos:exactMatch	re3data:r3d100010785	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	biocontext:NCBIGene	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	biolink:NCBIGene	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	fairsharing:FAIRsharing.5h3maw	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	miriam:ncbigene	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	n2t:ncbigene	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	prefixcommons:ncbigene	sssom:HumanCurated
+bioregistry:ncbigene	skos:exactMatch	re3data:r3d100010650	sssom:HumanCurated
 bioregistry:ncbigene	skos:exactMatch	wikidata:P351	sssom:HumanCurated
 bioregistry:ncbiprotein	skos:exactMatch	biocontext:NCBIProtein	sssom:HumanCurated
 bioregistry:ncbiprotein	skos:exactMatch	miriam:ncbiprotein	sssom:HumanCurated
 bioregistry:ncbiprotein	skos:exactMatch	n2t:ncbiprotein	sssom:HumanCurated
 bioregistry:ncbiprotein	skos:exactMatch	prefixcommons:ncbi.protein	sssom:HumanCurated
+bioregistry:ncbiprotein	skos:exactMatch	re3data:r3d100010776	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	aberowl:NCBITAXON	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	agroportal:NCBITAXON	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	biocontext:TAXONOMY	sssom:HumanCurated
@@ -3347,6 +3434,7 @@ bioregistry:ncbitaxon	skos:exactMatch	obofoundry:ncbitaxon	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	ols:ncbitaxon	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	ontobee:NCBITaxon	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	prefixcommons:uniprot.taxonomy	sssom:HumanCurated
+bioregistry:ncbitaxon	skos:exactMatch	re3data:r3d100010415	sssom:HumanCurated
 bioregistry:ncbitaxon	skos:exactMatch	wikidata:P685	sssom:HumanCurated
 bioregistry:ncbitaxon	bioregistry.schema:0000018	bioregistry:agro	sssom:HumanCurated
 bioregistry:ncbitaxon	bioregistry.schema:0000018	bioregistry:chiro	sssom:HumanCurated
@@ -3878,6 +3966,7 @@ bioregistry:pathwaycommons	skos:exactMatch	biocontext:PATHWAYCOMMONS	sssom:Human
 bioregistry:pathwaycommons	skos:exactMatch	miriam:pathwaycommons	sssom:HumanCurated
 bioregistry:pathwaycommons	skos:exactMatch	n2t:pathwaycommons	sssom:HumanCurated
 bioregistry:pathwaycommons	skos:exactMatch	prefixcommons:pathwaycommons	sssom:HumanCurated
+bioregistry:pathwaycommons	skos:exactMatch	re3data:r3d100012731	sssom:HumanCurated
 bioregistry:pato	skos:exactMatch	aberowl:PATO	sssom:HumanCurated
 bioregistry:pato	skos:exactMatch	agroportal:PATO	sssom:HumanCurated
 bioregistry:pato	skos:exactMatch	biocontext:PATO	sssom:HumanCurated
@@ -3967,6 +4056,7 @@ bioregistry:pdb	skos:exactMatch	fairsharing:FAIRsharing.mckkb4	sssom:HumanCurate
 bioregistry:pdb	skos:exactMatch	miriam:pdb	sssom:HumanCurated
 bioregistry:pdb	skos:exactMatch	n2t:pdb	sssom:HumanCurated
 bioregistry:pdb	skos:exactMatch	prefixcommons:pdbj	sssom:HumanCurated
+bioregistry:pdb	skos:exactMatch	re3data:r3d100010910	sssom:HumanCurated
 bioregistry:pdb	skos:exactMatch	wikidata:P638	sssom:HumanCurated
 bioregistry:pdb-ccd	skos:exactMatch	biocontext:PDB-CCD	sssom:HumanCurated
 bioregistry:pdb-ccd	skos:exactMatch	miriam:pdb-ccd	sssom:HumanCurated
@@ -4010,6 +4100,7 @@ bioregistry:peptideatlas	skos:exactMatch	fairsharing:FAIRsharing.dvyrsz	sssom:Hu
 bioregistry:peptideatlas	skos:exactMatch	miriam:peptideatlas	sssom:HumanCurated
 bioregistry:peptideatlas	skos:exactMatch	n2t:peptideatlas	sssom:HumanCurated
 bioregistry:peptideatlas	skos:exactMatch	prefixcommons:peptideatlas	sssom:HumanCurated
+bioregistry:peptideatlas	skos:exactMatch	re3data:r3d100010889	sssom:HumanCurated
 bioregistry:peptideatlas.dataset	skos:exactMatch	miriam:peptideatlas.dataset	sssom:HumanCurated
 bioregistry:peptideatlas.dataset	skos:exactMatch	n2t:peptideatlas.dataset	sssom:HumanCurated
 bioregistry:peroxibase	skos:exactMatch	biocontext:PEROXIBASE	sssom:HumanCurated
@@ -4031,6 +4122,7 @@ bioregistry:pgx	skos:exactMatch	biocontext:PGX	sssom:HumanCurated
 bioregistry:pgx	skos:exactMatch	fairsharing:FAIRsharing.65tdnz	sssom:HumanCurated
 bioregistry:pgx	skos:exactMatch	miriam:pgx	sssom:HumanCurated
 bioregistry:pgx	skos:exactMatch	n2t:pgx	sssom:HumanCurated
+bioregistry:pgx	skos:exactMatch	re3data:r3d100012820	sssom:HumanCurated
 bioregistry:pharmgkb.disease	skos:exactMatch	biocontext:PHARMGKB.DISEASE	sssom:HumanCurated
 bioregistry:pharmgkb.disease	skos:exactMatch	miriam:pharmgkb.disease	sssom:HumanCurated
 bioregistry:pharmgkb.disease	skos:exactMatch	n2t:pharmgkb.disease	sssom:HumanCurated
@@ -4055,6 +4147,7 @@ bioregistry:pharmgkb.pathways	skos:exactMatch	wikidata:P7001	sssom:HumanCurated
 bioregistry:phenolexplorer	skos:exactMatch	biocontext:PHENOLEXPLORER	sssom:HumanCurated
 bioregistry:phenolexplorer	skos:exactMatch	miriam:phenolexplorer	sssom:HumanCurated
 bioregistry:phenolexplorer	skos:exactMatch	n2t:phenolexplorer	sssom:HumanCurated
+bioregistry:phenolexplorer	skos:exactMatch	re3data:r3d100012197	sssom:HumanCurated
 bioregistry:phenx	skos:exactMatch	aberowl:PHENX	sssom:HumanCurated
 bioregistry:phenx	skos:exactMatch	bioportal:PHENX	sssom:HumanCurated
 bioregistry:phenx	skos:exactMatch	fairsharing:FAIRsharing.y5jcwa	sssom:HumanCurated
@@ -4138,6 +4231,7 @@ bioregistry:plasmodb	skos:exactMatch	fairsharing:FAIRsharing.g4n8sw	sssom:HumanC
 bioregistry:plasmodb	skos:exactMatch	miriam:plasmodb	sssom:HumanCurated
 bioregistry:plasmodb	skos:exactMatch	n2t:plasmodb	sssom:HumanCurated
 bioregistry:plasmodb	skos:exactMatch	prefixcommons:plasmodb	sssom:HumanCurated
+bioregistry:plasmodb	skos:exactMatch	re3data:r3d100011569	sssom:HumanCurated
 bioregistry:plo	skos:exactMatch	biocontext:PLO	sssom:HumanCurated
 bioregistry:plo	skos:exactMatch	obofoundry:plo	sssom:HumanCurated
 bioregistry:pmap.cutdb	skos:exactMatch	biocontext:PMAP.CUTDB	sssom:HumanCurated
@@ -4197,6 +4291,7 @@ bioregistry:pombase	skos:exactMatch	fairsharing:FAIRsharing.8jsya3	sssom:HumanCu
 bioregistry:pombase	skos:exactMatch	miriam:pombase	sssom:HumanCurated
 bioregistry:pombase	skos:exactMatch	n2t:pombase	sssom:HumanCurated
 bioregistry:pombase	skos:exactMatch	prefixcommons:pombase	sssom:HumanCurated
+bioregistry:pombase	skos:exactMatch	re3data:r3d100011478	sssom:HumanCurated
 bioregistry:pombase	skos:exactMatch	wikidata:P6245	sssom:HumanCurated
 bioregistry:poro	skos:exactMatch	aberowl:PORO	sssom:HumanCurated
 bioregistry:poro	skos:exactMatch	biocontext:PORO	sssom:HumanCurated
@@ -4254,8 +4349,8 @@ bioregistry:probonto	skos:exactMatch	n2t:probonto	sssom:HumanCurated
 bioregistry:probonto	skos:exactMatch	ols:probonto	sssom:HumanCurated
 bioregistry:proco	skos:exactMatch	aberowl:PROCO	sssom:HumanCurated
 bioregistry:proco	skos:exactMatch	obofoundry:proco	sssom:HumanCurated
-bioregistry:proco	skos:exactMatch	ontobee:PROCO	sssom:HumanCurated
 bioregistry:proco	skos:exactMatch	ols:proco	sssom:HumanCurated
+bioregistry:proco	skos:exactMatch	ontobee:PROCO	sssom:HumanCurated
 bioregistry:proco	bioregistry.schema:0000017	bioregistry:chebi	sssom:HumanCurated
 bioregistry:proco	bioregistry.schema:0000017	bioregistry:cheminf	sssom:HumanCurated
 bioregistry:proco	bioregistry.schema:0000017	bioregistry:obi	sssom:HumanCurated
@@ -4346,6 +4441,7 @@ bioregistry:pubchem.compound	skos:exactMatch	fairsharing:FAIRsharing.g63c77	ssso
 bioregistry:pubchem.compound	skos:exactMatch	miriam:pubchem.compound	sssom:HumanCurated
 bioregistry:pubchem.compound	skos:exactMatch	n2t:pubchem.compound	sssom:HumanCurated
 bioregistry:pubchem.compound	skos:exactMatch	prefixcommons:pubchem.compound	sssom:HumanCurated
+bioregistry:pubchem.compound	skos:exactMatch	re3data:r3d100010129	sssom:HumanCurated
 bioregistry:pubchem.compound	skos:exactMatch	wikidata:P662	sssom:HumanCurated
 bioregistry:pubchem.compound	bfo:0000050	bioregistry:pubchem	sssom:HumanCurated
 bioregistry:pubchem.element	bfo:0000050	bioregistry:pubchem	sssom:HumanCurated
@@ -4419,6 +4515,7 @@ bioregistry:reactome	skos:exactMatch	cheminf:000411	sssom:HumanCurated
 bioregistry:reactome	skos:exactMatch	miriam:reactome	sssom:HumanCurated
 bioregistry:reactome	skos:exactMatch	n2t:reactome	sssom:HumanCurated
 bioregistry:reactome	skos:exactMatch	prefixcommons:reactome	sssom:HumanCurated
+bioregistry:reactome	skos:exactMatch	re3data:r3d100010861	sssom:HumanCurated
 bioregistry:reactome	skos:exactMatch	wikidata:P3937	sssom:HumanCurated
 bioregistry:reaxys	skos:exactMatch	wikidata:P1579	sssom:HumanCurated
 bioregistry:rebase	skos:exactMatch	biocontext:REBASE	sssom:HumanCurated
@@ -4426,6 +4523,7 @@ bioregistry:rebase	skos:exactMatch	fairsharing:FAIRsharing.9sb9qh	sssom:HumanCur
 bioregistry:rebase	skos:exactMatch	miriam:rebase	sssom:HumanCurated
 bioregistry:rebase	skos:exactMatch	n2t:rebase	sssom:HumanCurated
 bioregistry:rebase	skos:exactMatch	prefixcommons:rebase	sssom:HumanCurated
+bioregistry:rebase	skos:exactMatch	re3data:r3d100012171	sssom:HumanCurated
 bioregistry:refseq	skos:exactMatch	biocontext:RefSeq	sssom:HumanCurated
 bioregistry:refseq	skos:exactMatch	fairsharing:FAIRsharing.4jg0qw	sssom:HumanCurated
 bioregistry:refseq	skos:exactMatch	miriam:refseq	sssom:HumanCurated
@@ -4484,6 +4582,7 @@ bioregistry:rhea	skos:exactMatch	fairsharing:FAIRsharing.pn1sr5	sssom:HumanCurat
 bioregistry:rhea	skos:exactMatch	miriam:rhea	sssom:HumanCurated
 bioregistry:rhea	skos:exactMatch	n2t:rhea	sssom:HumanCurated
 bioregistry:rhea	skos:exactMatch	prefixcommons:rhea	sssom:HumanCurated
+bioregistry:rhea	skos:exactMatch	re3data:r3d100010891	sssom:HumanCurated
 bioregistry:ricegap	skos:exactMatch	biocontext:RICEGAP	sssom:HumanCurated
 bioregistry:ricegap	skos:exactMatch	miriam:ricegap	sssom:HumanCurated
 bioregistry:ricegap	skos:exactMatch	n2t:ricegap	sssom:HumanCurated
@@ -4610,6 +4709,7 @@ bioregistry:sabiork.reaction	skos:exactMatch	fairsharing:FAIRsharing.cwx04e	ssso
 bioregistry:sabiork.reaction	skos:exactMatch	miriam:sabiork.reaction	sssom:HumanCurated
 bioregistry:sabiork.reaction	skos:exactMatch	n2t:sabiork.reaction	sssom:HumanCurated
 bioregistry:sabiork.reaction	skos:exactMatch	prefixcommons:sabiork.reaction	sssom:HumanCurated
+bioregistry:sabiork.reaction	skos:exactMatch	re3data:r3d100011052	sssom:HumanCurated
 bioregistry:salk	bioregistry.schema:0000018	bioregistry:efo	sssom:HumanCurated
 bioregistry:sao	skos:exactMatch	aberowl:SAO	sssom:HumanCurated
 bioregistry:sao	skos:exactMatch	biocontext:SAO	sssom:HumanCurated
@@ -4620,6 +4720,7 @@ bioregistry:sasbdb	skos:exactMatch	biocontext:SASBDB	sssom:HumanCurated
 bioregistry:sasbdb	skos:exactMatch	fairsharing:FAIRsharing.i1F3Hb	sssom:HumanCurated
 bioregistry:sasbdb	skos:exactMatch	miriam:sasbdb	sssom:HumanCurated
 bioregistry:sasbdb	skos:exactMatch	n2t:sasbdb	sssom:HumanCurated
+bioregistry:sasbdb	skos:exactMatch	re3data:r3d100012273	sssom:HumanCurated
 bioregistry:sbo	skos:exactMatch	aberowl:SBO	sssom:HumanCurated
 bioregistry:sbo	skos:exactMatch	biocontext:SBO	sssom:HumanCurated
 bioregistry:sbo	skos:exactMatch	bioportal:SBO	sssom:HumanCurated
@@ -4818,6 +4919,7 @@ bioregistry:soybase	skos:exactMatch	biocontext:SOYBASE	sssom:HumanCurated
 bioregistry:soybase	skos:exactMatch	fairsharing:FAIRsharing.z4agsr	sssom:HumanCurated
 bioregistry:soybase	skos:exactMatch	miriam:soybase	sssom:HumanCurated
 bioregistry:soybase	skos:exactMatch	n2t:soybase	sssom:HumanCurated
+bioregistry:soybase	skos:exactMatch	re3data:r3d100010846	sssom:HumanCurated
 bioregistry:spd	skos:exactMatch	aberowl:SPD	sssom:HumanCurated
 bioregistry:spd	skos:exactMatch	biocontext:SPD	sssom:HumanCurated
 bioregistry:spd	skos:exactMatch	bioportal:SPD	sssom:HumanCurated
@@ -4864,6 +4966,7 @@ bioregistry:storedb	skos:exactMatch	biocontext:STOREDB	sssom:HumanCurated
 bioregistry:storedb	skos:exactMatch	fairsharing:FAIRsharing.6h8d2r	sssom:HumanCurated
 bioregistry:storedb	skos:exactMatch	miriam:storedb	sssom:HumanCurated
 bioregistry:storedb	skos:exactMatch	n2t:storedb	sssom:HumanCurated
+bioregistry:storedb	skos:exactMatch	re3data:r3d100011049	sssom:HumanCurated
 bioregistry:storedb.dataset	bfo:0000050	bioregistry:storedb	sssom:HumanCurated
 bioregistry:storedb.file	bfo:0000050	bioregistry:storedb	sssom:HumanCurated
 bioregistry:storedb.study	bfo:0000050	bioregistry:storedb	sssom:HumanCurated
@@ -4872,6 +4975,7 @@ bioregistry:string	skos:exactMatch	fairsharing:FAIRsharing.9b7wvk	sssom:HumanCur
 bioregistry:string	skos:exactMatch	miriam:string	sssom:HumanCurated
 bioregistry:string	skos:exactMatch	n2t:string	sssom:HumanCurated
 bioregistry:string	skos:exactMatch	prefixcommons:string	sssom:HumanCurated
+bioregistry:string	skos:exactMatch	re3data:r3d100010604	sssom:HumanCurated
 bioregistry:string	bioregistry.schema:0000011	bioregistry:uniprot	sssom:HumanCurated
 bioregistry:sty	skos:exactMatch	aberowl:STY	sssom:HumanCurated
 bioregistry:sty	skos:exactMatch	agroportal:STY	sssom:HumanCurated
@@ -4909,6 +5013,7 @@ bioregistry:swisslipid	skos:exactMatch	biocontext:SWISSLIPID	sssom:HumanCurated
 bioregistry:swisslipid	skos:exactMatch	fairsharing:FAIRsharing.pxr7x2	sssom:HumanCurated
 bioregistry:swisslipid	skos:exactMatch	miriam:slm	sssom:HumanCurated
 bioregistry:swisslipid	skos:exactMatch	n2t:swisslipid	sssom:HumanCurated
+bioregistry:swisslipid	skos:exactMatch	re3data:r3d100012603	sssom:HumanCurated
 bioregistry:swisslipid	skos:exactMatch	wikidata:P8691	sssom:HumanCurated
 bioregistry:swissregulon	skos:exactMatch	biocontext:SWISSREGULON	sssom:HumanCurated
 bioregistry:swissregulon	skos:exactMatch	fairsharing:FAIRsharing.7fnx38	sssom:HumanCurated
@@ -4936,6 +5041,7 @@ bioregistry:t3db	skos:exactMatch	fairsharing:FAIRsharing.psn0h2	sssom:HumanCurat
 bioregistry:t3db	skos:exactMatch	miriam:t3db	sssom:HumanCurated
 bioregistry:t3db	skos:exactMatch	n2t:t3db	sssom:HumanCurated
 bioregistry:t3db	skos:exactMatch	prefixcommons:t3db	sssom:HumanCurated
+bioregistry:t3db	skos:exactMatch	re3data:r3d100012189	sssom:HumanCurated
 bioregistry:tads	skos:exactMatch	aberowl:TADS	sssom:HumanCurated
 bioregistry:tads	skos:exactMatch	biocontext:TADS	sssom:HumanCurated
 bioregistry:tads	skos:exactMatch	bioportal:TADS	sssom:HumanCurated
@@ -5020,6 +5126,7 @@ bioregistry:topfind	skos:exactMatch	biocontext:TOPFIND	sssom:HumanCurated
 bioregistry:topfind	skos:exactMatch	fairsharing:FAIRsharing.rkpmhn	sssom:HumanCurated
 bioregistry:topfind	skos:exactMatch	miriam:topfind	sssom:HumanCurated
 bioregistry:topfind	skos:exactMatch	n2t:topfind	sssom:HumanCurated
+bioregistry:topfind	skos:exactMatch	re3data:r3d100012721	sssom:HumanCurated
 bioregistry:topfind	bioregistry.schema:0000011	bioregistry:uniprot	sssom:HumanCurated
 bioregistry:toxoplasma	skos:exactMatch	biocontext:TOXOPLASMA	sssom:HumanCurated
 bioregistry:toxoplasma	skos:exactMatch	miriam:toxoplasma	sssom:HumanCurated
@@ -5037,6 +5144,7 @@ bioregistry:treebase	skos:exactMatch	fairsharing:FAIRsharing.zcn4w4	sssom:HumanC
 bioregistry:treebase	skos:exactMatch	miriam:treebase	sssom:HumanCurated
 bioregistry:treebase	skos:exactMatch	n2t:treebase	sssom:HumanCurated
 bioregistry:treebase	skos:exactMatch	prefixcommons:treebase	sssom:HumanCurated
+bioregistry:treebase	skos:exactMatch	re3data:r3d100010170	sssom:HumanCurated
 bioregistry:treefam	skos:exactMatch	biocontext:TREEFAM	sssom:HumanCurated
 bioregistry:treefam	skos:exactMatch	miriam:treefam	sssom:HumanCurated
 bioregistry:treefam	skos:exactMatch	n2t:treefam	sssom:HumanCurated
@@ -5045,10 +5153,12 @@ bioregistry:trichdb	skos:exactMatch	biocontext:TRICHDB	sssom:HumanCurated
 bioregistry:trichdb	skos:exactMatch	fairsharing:FAIRsharing.pv0ezt	sssom:HumanCurated
 bioregistry:trichdb	skos:exactMatch	miriam:trichdb	sssom:HumanCurated
 bioregistry:trichdb	skos:exactMatch	n2t:trichdb	sssom:HumanCurated
+bioregistry:trichdb	skos:exactMatch	re3data:r3d100012461	sssom:HumanCurated
 bioregistry:tritrypdb	skos:exactMatch	biocontext:TRITRYPDB	sssom:HumanCurated
 bioregistry:tritrypdb	skos:exactMatch	fairsharing:FAIRsharing.fs1z27	sssom:HumanCurated
 bioregistry:tritrypdb	skos:exactMatch	miriam:tritrypdb	sssom:HumanCurated
 bioregistry:tritrypdb	skos:exactMatch	n2t:tritrypdb	sssom:HumanCurated
+bioregistry:tritrypdb	skos:exactMatch	re3data:r3d100011479	sssom:HumanCurated
 bioregistry:ttd.drug	skos:exactMatch	biocontext:TTD.DRUG	sssom:HumanCurated
 bioregistry:ttd.drug	skos:exactMatch	miriam:ttd.drug	sssom:HumanCurated
 bioregistry:ttd.drug	skos:exactMatch	n2t:ttd.drug	sssom:HumanCurated
@@ -5138,6 +5248,7 @@ bioregistry:unigene	skos:exactMatch	fairsharing:FAIRsharing.ge1c3p	sssom:HumanCu
 bioregistry:unigene	skos:exactMatch	miriam:unigene	sssom:HumanCurated
 bioregistry:unigene	skos:exactMatch	n2t:unigene	sssom:HumanCurated
 bioregistry:unigene	skos:exactMatch	prefixcommons:unigene	sssom:HumanCurated
+bioregistry:unigene	skos:exactMatch	re3data:r3d100010774	sssom:HumanCurated
 bioregistry:unii	skos:exactMatch	biocontext:UNII	sssom:HumanCurated
 bioregistry:unii	skos:exactMatch	cheminf:000563	sssom:HumanCurated
 bioregistry:unii	skos:exactMatch	miriam:unii	sssom:HumanCurated
@@ -5152,6 +5263,7 @@ bioregistry:uniparc	skos:exactMatch	biocontext:UNIPARC	sssom:HumanCurated
 bioregistry:uniparc	skos:exactMatch	miriam:uniparc	sssom:HumanCurated
 bioregistry:uniparc	skos:exactMatch	n2t:uniparc	sssom:HumanCurated
 bioregistry:uniparc	skos:exactMatch	prefixcommons:uniparc	sssom:HumanCurated
+bioregistry:uniparc	skos:exactMatch	re3data:r3d100011519	sssom:HumanCurated
 bioregistry:unipathway.compound	skos:exactMatch	biocontext:UNIPATHWAY.COMPOUND	sssom:HumanCurated
 bioregistry:unipathway.compound	skos:exactMatch	miriam:unipathway.compound	sssom:HumanCurated
 bioregistry:unipathway.compound	skos:exactMatch	n2t:unipathway.compound	sssom:HumanCurated
@@ -5164,6 +5276,7 @@ bioregistry:uniprot	skos:exactMatch	fairsharing:FAIRsharing.s1ne3g	sssom:HumanCu
 bioregistry:uniprot	skos:exactMatch	miriam:uniprot	sssom:HumanCurated
 bioregistry:uniprot	skos:exactMatch	n2t:uniprot	sssom:HumanCurated
 bioregistry:uniprot	skos:exactMatch	prefixcommons:uniprot	sssom:HumanCurated
+bioregistry:uniprot	skos:exactMatch	re3data:r3d100011521	sssom:HumanCurated
 bioregistry:uniprot	skos:exactMatch	wikidata:P352	sssom:HumanCurated
 bioregistry:uniprot.chain	skos:exactMatch	miriam:uniprot.chain	sssom:HumanCurated
 bioregistry:uniprot.chain	bfo:0000050	bioregistry:uniprot	sssom:HumanCurated
@@ -5185,6 +5298,7 @@ bioregistry:uniprot.tissue	skos:exactMatch	n2t:tissuelist	sssom:HumanCurated
 bioregistry:uniprot.tissue	bfo:0000050	bioregistry:uniprot	sssom:HumanCurated
 bioregistry:uniprot.var	bfo:0000050	bioregistry:uniprot	sssom:HumanCurated
 bioregistry:uniref	skos:exactMatch	miriam:uniref	sssom:HumanCurated
+bioregistry:uniref	skos:exactMatch	re3data:r3d100011518	sssom:HumanCurated
 bioregistry:unists	skos:exactMatch	biocontext:UNISTS	sssom:HumanCurated
 bioregistry:unists	skos:exactMatch	miriam:unists	sssom:HumanCurated
 bioregistry:unists	skos:exactMatch	n2t:unists	sssom:HumanCurated
@@ -5194,6 +5308,7 @@ bioregistry:unite	skos:exactMatch	fairsharing:FAIRsharing.cnwx8c	sssom:HumanCura
 bioregistry:unite	skos:exactMatch	miriam:unite	sssom:HumanCurated
 bioregistry:unite	skos:exactMatch	n2t:unite	sssom:HumanCurated
 bioregistry:unite	skos:exactMatch	prefixcommons:unite	sssom:HumanCurated
+bioregistry:unite	skos:exactMatch	re3data:r3d100011316	sssom:HumanCurated
 bioregistry:uo	skos:exactMatch	aberowl:UO	sssom:HumanCurated
 bioregistry:uo	skos:exactMatch	biocontext:UO	sssom:HumanCurated
 bioregistry:uo	skos:exactMatch	bioportal:UO	sssom:HumanCurated
@@ -5260,9 +5375,12 @@ bioregistry:vectorbase	skos:exactMatch	fairsharing:FAIRsharing.3etvdn	sssom:Huma
 bioregistry:vectorbase	skos:exactMatch	miriam:vectorbase	sssom:HumanCurated
 bioregistry:vectorbase	skos:exactMatch	n2t:vectorbase	sssom:HumanCurated
 bioregistry:vectorbase	skos:exactMatch	prefixcommons:vectorbase	sssom:HumanCurated
+bioregistry:vectorbase	skos:exactMatch	re3data:r3d100010880	sssom:HumanCurated
 bioregistry:vega	skos:exactMatch	fairsharing:FAIRsharing.mr293q	sssom:HumanCurated
 bioregistry:vega	skos:exactMatch	prefixcommons:vega	sssom:HumanCurated
+bioregistry:vega	skos:exactMatch	re3data:r3d100012575	sssom:HumanCurated
 bioregistry:vegbank	skos:exactMatch	miriam:vegbank	sssom:HumanCurated
+bioregistry:vegbank	skos:exactMatch	re3data:r3d100010153	sssom:HumanCurated
 bioregistry:vfb	skos:exactMatch	fairsharing:FAIRsharing.nzaz6z	sssom:HumanCurated
 bioregistry:vfb	skos:exactMatch	miriam:vfb	sssom:HumanCurated
 bioregistry:vfb	skos:exactMatch	n2t:vfb	sssom:HumanCurated
@@ -5293,6 +5411,7 @@ bioregistry:viralzone	skos:exactMatch	biocontext:VIRALZONE	sssom:HumanCurated
 bioregistry:viralzone	skos:exactMatch	fairsharing:FAIRsharing.tppk10	sssom:HumanCurated
 bioregistry:viralzone	skos:exactMatch	miriam:viralzone	sssom:HumanCurated
 bioregistry:viralzone	skos:exactMatch	n2t:viralzone	sssom:HumanCurated
+bioregistry:viralzone	skos:exactMatch	re3data:r3d100013314	sssom:HumanCurated
 bioregistry:virsirna	skos:exactMatch	biocontext:VIRSIRNA	sssom:HumanCurated
 bioregistry:virsirna	skos:exactMatch	miriam:virsirna	sssom:HumanCurated
 bioregistry:virsirna	skos:exactMatch	n2t:virsirna	sssom:HumanCurated
@@ -5391,6 +5510,7 @@ bioregistry:wikipathways	skos:exactMatch	fairsharing:FAIRsharing.g7b4rj	sssom:Hu
 bioregistry:wikipathways	skos:exactMatch	miriam:wikipathways	sssom:HumanCurated
 bioregistry:wikipathways	skos:exactMatch	n2t:wikipathways	sssom:HumanCurated
 bioregistry:wikipathways	skos:exactMatch	prefixcommons:wikipathways	sssom:HumanCurated
+bioregistry:wikipathways	skos:exactMatch	re3data:r3d100013316	sssom:HumanCurated
 bioregistry:wikipathways	skos:exactMatch	wikidata:P2410	sssom:HumanCurated
 bioregistry:wikipedia.en	skos:exactMatch	biocontext:WIKIPEDIA.EN	sssom:HumanCurated
 bioregistry:wikipedia.en	skos:exactMatch	miriam:wikipedia.en	sssom:HumanCurated
@@ -5406,6 +5526,7 @@ bioregistry:wormbase	skos:exactMatch	fairsharing:FAIRsharing.zx1td8	sssom:HumanC
 bioregistry:wormbase	skos:exactMatch	miriam:wb	sssom:HumanCurated
 bioregistry:wormbase	skos:exactMatch	n2t:wb	sssom:HumanCurated
 bioregistry:wormbase	skos:exactMatch	prefixcommons:wormbase	sssom:HumanCurated
+bioregistry:wormbase	skos:exactMatch	re3data:r3d100010424	sssom:HumanCurated
 bioregistry:wormbase	skos:exactMatch	wikidata:P3860	sssom:HumanCurated
 bioregistry:wormpep	skos:exactMatch	biocontext:WORMPEP	sssom:HumanCurated
 bioregistry:wormpep	skos:exactMatch	miriam:wormpep	sssom:HumanCurated
@@ -5442,6 +5563,7 @@ bioregistry:xenbase	skos:exactMatch	fairsharing:FAIRsharing.jrv6wj	sssom:HumanCu
 bioregistry:xenbase	skos:exactMatch	miriam:xenbase	sssom:HumanCurated
 bioregistry:xenbase	skos:exactMatch	n2t:xenbase	sssom:HumanCurated
 bioregistry:xenbase	skos:exactMatch	prefixcommons:xenbase	sssom:HumanCurated
+bioregistry:xenbase	skos:exactMatch	re3data:r3d100011331	sssom:HumanCurated
 bioregistry:xl	skos:exactMatch	aberowl:XL	sssom:HumanCurated
 bioregistry:xl	skos:exactMatch	biocontext:XL	sssom:HumanCurated
 bioregistry:xl	skos:exactMatch	ols:xl	sssom:HumanCurated
@@ -5501,6 +5623,7 @@ bioregistry:zeco	skos:exactMatch	obofoundry:zeco	sssom:HumanCurated
 bioregistry:zeco	skos:exactMatch	ols:zeco	sssom:HumanCurated
 bioregistry:zeco	skos:exactMatch	ontobee:ZECO	sssom:HumanCurated
 bioregistry:zeco	bioregistry.schema:0000018	bioregistry:mco	sssom:HumanCurated
+bioregistry:zenodo.record	skos:exactMatch	re3data:r3d100010468	sssom:HumanCurated
 bioregistry:zenodo.record	skos:exactMatch	wikidata:P4901	sssom:HumanCurated
 bioregistry:zfa	skos:exactMatch	aberowl:ZFA	sssom:HumanCurated
 bioregistry:zfa	skos:exactMatch	biocontext:ZFA	sssom:HumanCurated
@@ -5527,6 +5650,7 @@ bioregistry:zfs	skos:exactMatch	ontobee:ZFS	sssom:HumanCurated
 bioregistry:zinc	skos:exactMatch	biocontext:ZINC	sssom:HumanCurated
 bioregistry:zinc	skos:exactMatch	miriam:zinc	sssom:HumanCurated
 bioregistry:zinc	skos:exactMatch	n2t:zinc	sssom:HumanCurated
+bioregistry:zinc	skos:exactMatch	re3data:r3d100010372	sssom:HumanCurated
 bioregistry:zinc	skos:exactMatch	wikidata:P2084	sssom:HumanCurated
 bioregistry:zp	skos:exactMatch	aberowl:ZP	sssom:HumanCurated
 bioregistry:zp	skos:exactMatch	biocontext:ZP	sssom:HumanCurated
diff --git a/exports/sssom/bioregistry.sssom.yml b/exports/sssom/bioregistry.sssom.yml
index 3de7a979e..897698d08 100644
--- a/exports/sssom/bioregistry.sssom.yml
+++ b/exports/sssom/bioregistry.sssom.yml
@@ -22,6 +22,7 @@ curie_map:
   ontobee: http://www.ontobee.org/ontology/
   prefixcc: https://prefix.cc/
   prefixcommons: https://prefixcommons.org/?q=
+  re3data: https://www.re3data.org/repository/
   uniprot.resource: https://www.uniprot.org/database/DB-
   wikidata: 'https://www.wikidata.org/wiki/Property:'
 license: https://creativecommons.org/publicdomain/zero/1.0/
diff --git a/exports/tables/comparison_goveranance.tex b/exports/tables/comparison_goveranance.tex
index 7bb88ca78..7b275cf30 100644
--- a/exports/tables/comparison_goveranance.tex
+++ b/exports/tables/comparison_goveranance.tex
@@ -26,6 +26,7 @@
             OLS &  Bio-Ontologies &       Active &                           &                        &                              ✓ &                             &                     ✓* \\
         OntoBee &  Bio-Ontologies &       Active &                           &                        &                                &                             &                        \\
  Prefix Commons &   Life Sciences &       Active &                           &                      ✓ &                              ✓ &                             &                      ✓ \\
+        re3data &         General &       Active &                           &                      ✓ &                              ✓ &                             &                      ✗ \\
         UniProt &        Internal &       Active &                           &                      ✓ &                                &                             &                        \\
        Wikidata &         General &       Active &                           &                      ✓ &                              ✓ &                             &                     ✓* \\
 \bottomrule
diff --git a/exports/tables/comparison_goveranance.tsv b/exports/tables/comparison_goveranance.tsv
index 57a893629..f63b0d45d 100644
--- a/exports/tables/comparison_goveranance.tsv
+++ b/exports/tables/comparison_goveranance.tsv
@@ -19,5 +19,6 @@ OBO Foundry	Bio-Ontologies	Active		✓	✓	✓	✓
 OLS	Bio-Ontologies	Active			✓		✓*
 OntoBee	Bio-Ontologies	Active					
 Prefix Commons	Life Sciences	Active		✓	✓		✓
+re3data	General	Active		✓	✓		✗
 UniProt	Internal	Active		✓			
 Wikidata	General	Active		✓	✓		✓*
diff --git a/exports/tables/comparison_metadata.tex b/exports/tables/comparison_metadata.tex
index dc48643a0..40f408006 100644
--- a/exports/tables/comparison_metadata.tex
+++ b/exports/tables/comparison_metadata.tex
@@ -27,6 +27,7 @@
             OLS &              ✓ &        ● &     ✓ &          - &            &        - &              - &               &       ✓ &       ● &       ● &                          ✓ &      ✓ &               ✓ &          &        \\
         OntoBee &              ✓ &        ✓ &     ✓ &          - &            &        - &              - &               &         &         &       ✓ &                            &        &               ✓ &          &      ✓ \\
  Prefix Commons &              ✓ &        ● &     ● &          ● &          ● &        ● &              ✓ &             ● &         &         &         &                          ✓ &      ✓ &               ✓ &          &        \\
+        re3data &              ✓ &        ✓ &     ✓ &            &            &          &                &               &       ● &         &       ● &                            &      ✓ &               ✓ &          &        \\
         UniProt &              ✓ &        ✓ &       &            &            &        ✓ &                &               &         &         &         &                          ✓ &      ✓ &               ✓ &          &        \\
        Wikidata &              ✓ &        ● &     ✓ &          ● &          ● &        ● &              ● &               &      ●* &      ●* &      ●* &                          ✓ &      ✓ &               ✓ &          &        \\
 \bottomrule
diff --git a/exports/tables/comparison_metadata.tsv b/exports/tables/comparison_metadata.tsv
index e7b4732fb..cd1068cd1 100644
--- a/exports/tables/comparison_metadata.tsv
+++ b/exports/tables/comparison_metadata.tsv
@@ -20,5 +20,6 @@ OBO Foundry	✓	✓	✓						✓		✓	✓		✓	✓
 OLS	✓	●	✓	-		-	-		✓	●	●	✓	✓	✓		
 OntoBee	✓	✓	✓	-		-	-				✓			✓		✓
 Prefix Commons	✓	●	●	●	●	●	✓	●				✓	✓	✓		
+re3data	✓	✓	✓						●		●		✓	✓		
 UniProt	✓	✓				✓						✓	✓	✓		
 Wikidata	✓	●	✓	●	●	●	●		●*	●*	●*	✓	✓	✓		
diff --git a/exports/tables/summary.tex b/exports/tables/summary.tex
index 4c955a8de..6fe396ab4 100644
--- a/exports/tables/summary.tex
+++ b/exports/tables/summary.tex
@@ -6,16 +6,16 @@
 \toprule
                 Category &      Count \\
 \midrule
-                 Version & 0.5.53-dev \\
-     Registries Surveyed &         23 \\
-      Registries Aligned &         22 \\
+                 Version & 0.5.54-dev \\
+     Registries Surveyed &         24 \\
+      Registries Aligned &         23 \\
                 Prefixes &       1419 \\
-                Synonyms &        393 \\
- Cross-registry Mappings &       6812 \\
+                Synonyms &        394 \\
+ Cross-registry Mappings &       6936 \\
       Curated Mismatches &         25 \\
 Collections and Contexts &          7 \\
      Direct Contributors &         28 \\
-      Total Contributors &        167 \\
+      Total Contributors &        168 \\
 \bottomrule
 \end{tabular}
 \end{table}
diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
index 87f7560db..e68b7ebdb 100644
--- a/src/bioregistry/data/bioregistry.json
+++ b/src/bioregistry/data/bioregistry.json
@@ -507,7 +507,14 @@
       "description": "Addgene archives and distributes plasmids for researchers around the globe. They are working with thousands of laboratories to assemble a high-quality library of published plasmids for use in research and discovery. By linking plasmids with articles, scientists can always find data related to the materials they request.",
       "homepage": "https://www.addgene.org/",
       "name": "Addgene",
-      "prefix": "r3d100010741"
+      "prefix": "r3d100010741",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.8hcczk",
+        "miriam": "00000675",
+        "nif": "0000-11872",
+        "omics": "04712",
+        "scr": "002037"
+      }
     }
   },
   "ado": {
@@ -1423,7 +1430,12 @@
       "description": "AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.",
       "homepage": "https://amoebadb.org/amoeba/app",
       "name": "AmoebaDB",
-      "prefix": "r3d100012457"
+      "prefix": "r3d100012457",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.swbypy",
+        "miriam": "00000148",
+        "omics": "03152"
+      }
     }
   },
   "amphx": {
@@ -2151,7 +2163,12 @@
       "description": "ArachnoServer is a manually curated database containing information on the sequence, three-dimensional structure, and biological activity of protein toxins derived from spider venom. Spiders are the largest group of venomous animals and they are predicted to contain by far the largest number of pharmacologically active peptide toxins (Escoubas et al., 2006). ArachnoServer has been custom-built so that a wide range of biological scientists, including neuroscientists, pharmacologists, and toxinologists, can readily access key data relevant to their discipline without being overwhelmed by extraneous information.",
       "homepage": "http://www.arachnoserver.org/mainMenu.html",
       "name": "ArachnoServer",
-      "prefix": "r3d100012902"
+      "prefix": "r3d100012902",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.c54ywe",
+        "miriam": "00000193",
+        "omics": "03117"
+      }
     },
     "uniprot": {
       "category": "Organism-specific databases",
@@ -2410,7 +2427,17 @@
       "description": "ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.",
       "homepage": "https://www.ebi.ac.uk/arrayexpress/",
       "name": "ArrayExpress",
-      "prefix": "r3d100010222"
+      "prefix": "r3d100010222",
+      "synonyms": [
+        "functional genomics data"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.6k0kwd",
+        "miriam": "00000036",
+        "nif": "0000-30123",
+        "omics": "01023",
+        "scr": "002964"
+      }
     }
   },
   "arrayexpress.platform": {
@@ -2501,7 +2528,11 @@
       "description": "arrayMap is a repository of cancer genome profiling data. Original) from primary repositories (e.g. NCBI GEO, EBI ArrayExpress, TCGA) is re-processed and annotated for metadata. Unique visualization of the processed data allows critical evaluation of data quality and genome information. Structured metadata provides easy access to summary statistics, with a focus on copy number aberrations in cancer entities.",
       "homepage": "https://arraymap.progenetix.org/",
       "name": "arrayMap",
-      "prefix": "r3d100012630"
+      "prefix": "r3d100012630",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.1fbc5y",
+        "omics": "02596"
+      }
     }
   },
   "arxiv": {
@@ -2653,7 +2684,14 @@
       "description": "ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data collected by or in collaboration with researchers at the University of Wisconsin - Madison.\nASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments.",
       "homepage": "https://asap.ahabs.wisc.edu/asap/home.php",
       "name": "ASAP",
-      "prefix": "r3d100010666"
+      "prefix": "r3d100010666",
+      "synonyms": [
+        "A systematic annotation package for community analysis of genomes"
+      ],
+      "xrefs": {
+        "nif": "0000-02571",
+        "scr": "001849"
+      }
     }
   },
   "ascl": {
@@ -3268,7 +3306,15 @@
       "description": "BacDive is a bacterial metadatabase that provides strain-linked information about bacterial and archaeal biodiversity. The database is a resource for different kind of phenotypic data like taxonomy, morphology, physiology, environment and molecular-biology. The majority of data is manually annotated and curated. With the release in April 2019 BacDive offers information for 80,584 strains. The database is hosted by the Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH and is part of de.NBI the German Network for Bioinformatics Infrastructure.",
       "homepage": "https://bacdive.dsmz.de/",
       "name": "BacDive",
-      "prefix": "r3d100013060"
+      "prefix": "r3d100013060",
+      "synonyms": [
+        "Bacterial Diversity Metadatabase"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.aSszvY",
+        "miriam": "00000676",
+        "omics": "10161"
+      }
     }
   },
   "bacmap.biog": {
@@ -3383,7 +3429,16 @@
       "description": "BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. The information in this database is very easy to extract and allows rapid prediction of relationships structure/function and target organisms of these peptides and therefore better exploitation of their biological activity in both the medical and food sectors.",
       "homepage": "http://bactibase.hammamilab.org/main.php",
       "name": "BACTIBASE",
-      "prefix": "r3d100012755"
+      "prefix": "r3d100012755",
+      "synonyms": [
+        "a database dedicated to bacteriocins"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.5f5mfm",
+        "nlx": "54530",
+        "omics": "05726",
+        "scr": "006694"
+      }
     },
     "uri_format": "http://bactibase.hammamilab.org/$1"
   },
@@ -3936,7 +3991,12 @@
       "description": "!!!!!  This database doesn't exist anymore.  2017-09-05   !!!!!BeetleBase is a comprehensive sequence database and important community resource for Tribolium genetics, genomics and developmental biology. It provides genetic data on the Tribolium Castaneum, Red Flour Beetle, as gene maps, official gene set, reference sequences, predicted models, and whole-genome tiling array representing developmental stages.",
       "homepage": "http://beetlebase.org/",
       "name": "BeetleBase",
-      "prefix": "r3d100010921"
+      "prefix": "r3d100010921",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.h5f091",
+        "nif": "0000-02599",
+        "omics": "03118"
+      }
     }
   },
   "begdb": {
@@ -4559,7 +4619,16 @@
       "description": "BindingDB is a public, web-accessible knowledgebase of measured binding affinities, focusing chiefly on the interactions of proteins considered to be candidate drug-targets with ligands that are small, drug-like molecules. BindingDB supports medicinal chemistry and drug discovery via literature awareness and development of structure-activity relations (SAR and QSAR); validation of computational chemistry and molecular modeling approaches such as docking, scoring and free energy methods; chemical biology and chemical genomics; and basic studies of the physical chemistry of molecular recognition. BindingDB also includes a small collection of host-guest binding data of interest to chemists studying supramolecular systems.\n\nThe data collection derives from a variety of measurement techniques, including enzyme inhibition and kinetics, isothermal titration calorimetry, NMR, and radioligand and competition assays. BindingDB includes data extracted from the literature and from US Patents by the BindingDB project, selected PubChem confirmatory BioAssays, and ChEMBL entries for which a well defined protein target (\"TARGET_TYPE='PROTEIN'\") is provided.",
       "homepage": "http://bindingdb.org/bind/index.jsp",
       "name": "BindingDB",
-      "prefix": "r3d100012074"
+      "prefix": "r3d100012074",
+      "synonyms": [
+        "BDB",
+        "The Binding Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.3b36hk",
+        "nif": "0000-02603",
+        "scr": "000390"
+      }
     },
     "uniprot": {
       "category": "Chemistry databases",
@@ -4792,7 +4861,17 @@
       "description": "The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans. BioGRID is an online interaction repository with data compiled through comprehensive curation efforts. All interaction data are freely provided through our search index and available via download in a wide variety of standardized formats.",
       "homepage": "https://thebiogrid.org/",
       "name": "BioGRID",
-      "prefix": "r3d100010350"
+      "prefix": "r3d100010350",
+      "synonyms": [
+        "Biological General Repository for Interaction Datasets"
+      ],
+      "xrefs": {
+        "fairsharing": "fairsharing.9d5f5r",
+        "miriam": "00000058",
+        "nif": "0000-00432",
+        "omics": "01901",
+        "scr": "007393"
+      }
     },
     "twitter": "biogrid",
     "uniprot": {
@@ -5383,7 +5462,13 @@
       "description": "BioPortal is an open repository of biomedical ontologies, a service that provides access to those ontologies, and a set of tools for working with them. BioPortal provides a wide range of such tools, either directly via the BioPortal web site, or using the BioPortal web service REST API. BioPortal also includes community features for adding notes, reviews, and even mappings to specific ontologies.\nBioPortal has four major product components: the web application; the API services; widgets, or applets, that can be installed on your own site; and a Virtual Appliance version that is available for download or through Amazon Web Services machine instance (AMI). There is also a beta release SPARQL endpoint.",
       "homepage": "https://bioportal.bioontology.org/",
       "name": "BioPortal",
-      "prefix": "r3d100012344"
+      "prefix": "r3d100012344",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.4m97ah",
+        "miriam": "00000187",
+        "nif": "0000-23346",
+        "scr": "002713"
+      }
     }
   },
   "bioproject": {
@@ -5452,7 +5537,13 @@
       "description": "The BioProject database is a searcheable collection of complete and incomplete (in-progress) large-scale molecular projects including genome sequencing and assembly, transcriptome, metagenomic, annotation, expression and mapping projects. BioProject provides a central point to link to all data associated with a project in the NCBI molecular and literature databases.",
       "homepage": "https://www.ncbi.nlm.nih.gov/bioproject/",
       "name": "BioProject",
-      "prefix": "r3d100013330"
+      "prefix": "r3d100013330",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.aqhv1y",
+        "nlx": "143909",
+        "omics": "05338",
+        "scr": "004801"
+      }
     },
     "uri_format": "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"
   },
@@ -5646,7 +5737,16 @@
       "description": "The BioSample database contains descriptions of biological source materials used in experimental assays.",
       "homepage": "https://www.ncbi.nlm.nih.gov/biosample/",
       "name": "BioSample",
-      "prefix": "r3d100012828"
+      "prefix": "r3d100012828",
+      "synonyms": [
+        "BioSample at the NCBI"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.qr6pqk",
+        "nlx": "143929",
+        "omics": "01024",
+        "scr": "004854"
+      }
     },
     "synonyms": [
       "biosamples"
@@ -5673,7 +5773,10 @@
       "description": "BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.",
       "homepage": "https://www.biosimulations.org",
       "name": "BioSimulations",
-      "prefix": "r3d100013361"
+      "prefix": "r3d100013361",
+      "xrefs": {
+        "scr": "018733"
+      }
     }
   },
   "biosimulators": {
@@ -5709,7 +5812,10 @@
       "description": "BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (supported modeling frameworks, simulation algorithms, and modeling formats) needed for specific modeling projects.",
       "homepage": "https://biosimulators.org",
       "name": "BioSimulators",
-      "prefix": "r3d100013432"
+      "prefix": "r3d100013432",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.pwEima"
+      }
     }
   },
   "biostudies": {
@@ -5756,7 +5862,11 @@
       "description": "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.",
       "homepage": "https://www.ebi.ac.uk/biostudies/",
       "name": "BioStudies",
-      "prefix": "r3d100012627"
+      "prefix": "r3d100012627",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.mtjvme",
+        "omics": "23022"
+      }
     }
   },
   "biosystems": {
@@ -5877,7 +5987,10 @@
       "description": "bio.tools is a software registry for bioinformatics and the life sciences.",
       "homepage": "https://bio.tools",
       "name": "bio.tools",
-      "prefix": "r3d100013668"
+      "prefix": "r3d100013668",
+      "xrefs": {
+        "biodbcore": "001815"
+      }
     }
   },
   "biozil": {
@@ -5991,7 +6104,15 @@
       "description": "Bitbucket is a web-based version control repository hosting service owned by Atlassian, for source code and development projects that use either Mercurial or Git revision control systems.",
       "homepage": "https://bitbucket.org/",
       "name": "Bitbucket",
-      "prefix": "r3d100013478"
+      "prefix": "r3d100013478",
+      "synonyms": [
+        "Atlassian Bitbucket"
+      ],
+      "xrefs": {
+        "biodbcore": "001790",
+        "nlx": "158615",
+        "scr": "000502"
+      }
     }
   },
   "bitterdb.cpd": {
@@ -6308,7 +6429,17 @@
       "description": "BRENDA is the main collection of enzyme functional data available to the scientific community worldwide.  The enzymes are classified according to the Enzyme Commission list of enzymes. It is available free of charge for via the internet (http://www.brenda-enzymes.org/) and as an in-house database for commercial users (requests to our distributor Biobase). The enzymes are classified according to the Enzyme Commission list of enzymes. Some 5000 \"different\" enzymes are covered. Frequently enzymes with very different properties are included under the same EC number. BRENDA includes biochemical and molecular information on classification, nomenclature, reaction, specificity, functional parameters, occurrence, enzyme structure, application, engineering, stability, disease, isolation, and preparation. The database also provides additional information on ligands, which function as natural or in vitro substrates/products, inhibitors, activating compounds, cofactors, bound metals, and other attributes.",
       "homepage": "https://www.brenda-enzymes.info/",
       "name": "BRENDA",
-      "prefix": "r3d100010616"
+      "prefix": "r3d100010616",
+      "synonyms": [
+        "BRaunschweig ENzyme DAtabase",
+        "the comprehensive enzyme information system"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.etp533",
+        "nif": "0000-30222",
+        "omics": "02681",
+        "scr": "002997"
+      }
     },
     "uniprot": {
       "category": "Enzyme and pathway databases",
@@ -7331,7 +7462,17 @@
       "description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures.  There are four major levels in the CATH hierarchy; Class, Architecture, Topology and Homologous superfamily.",
       "homepage": "http://www.cathdb.info/",
       "name": "CATH",
-      "prefix": "r3d100012629"
+      "prefix": "r3d100012629",
+      "synonyms": [
+        "CATH-Gene3D",
+        "Class  Architecture Topology  Homologous superfamily"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.xgcyyn",
+        "miriam": "00000210",
+        "nif": "0000-02640",
+        "scr": "007583"
+      }
     }
   },
   "cath.domain": {
@@ -8326,7 +8467,14 @@
       "description": "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines, Naturally immortal cell lines (example: stem cell lines), Finite life cell lines when those are distributed and used widely, Vertebrate cell line with an emphasis on human, mouse and rat cell lines, Invertebrate (insects and ticks) cell lines. Its scope does not include: Primary cell lines (with the exception of the finite life cell lines described above), Plant cell lines.  Cellosaurus was initiated to be used as a cell line controlled vocabulary in the context of the neXtProt knowledgebase, but it quickly become apparent that there was a need for a cell line knowledge resource that would serve the needs of individual researchers, cell line distributors and bioinformatic resources. This leads to an increase of the scope and depth of the content of the Cellosaurus. The Cellosaurus is a participant of the Resource Identification Initiative and contributes actively to the work of the International Cell Line Authentication Committee (ICLAC).",
       "homepage": "https://web.expasy.org/cellosaurus/",
       "name": "Cellosaurus",
-      "prefix": "r3d100013293"
+      "prefix": "r3d100013293",
+      "synonyms": [
+        "The Cellosaurus On ExPASy"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.hkk309",
+        "scr": "013869"
+      }
     },
     "synonyms": [
       "CVCL"
@@ -8582,7 +8730,10 @@
       "description": "The sequencing of several bird genomes and the anticipated sequencing of many more provided the impetus to develop a model organism database devoted to the taxonomic class: Aves. Birds provide model organisms important to the study of neurobiology, immunology, genetics, development, oncology, virology, cardiovascular biology, evolution and a variety of other life sciences. Many bird species are also important to agriculture, providing an enormous worldwide food source worldwide. Genomic approaches are proving invaluable to studying traits that affect meat yield, disease resistance, behavior, and bone development along with many other factors affecting productivity. In this context, BirdBase will serve both biomedical and agricultural researchers.",
       "homepage": "http://birdbase.arizona.edu/birdbase/",
       "name": "Birdbase",
-      "prefix": "r3d100012429"
+      "prefix": "r3d100012429",
+      "synonyms": [
+        "A database of avian genes & genomes"
+      ]
     },
     "synonyms": [
       "BirdBase",
@@ -8905,7 +9056,17 @@
       "description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of 'small molecular entities'. The term 'molecular entity' encompasses any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms (either deliberately, as for drugs, or unintentionally', as for chemicals in the environment). The qualifier 'small' implies the exclusion of entities directly encoded by the genome, and thus as a rule nucleic acids, proteins and peptides derived from proteins by cleavage are not included.",
       "homepage": "https://www.ebi.ac.uk/chebi/",
       "name": "ChEBI",
-      "prefix": "r3d100012626"
+      "prefix": "r3d100012626",
+      "synonyms": [
+        "Chemical Entities of Biological Interest"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.62qk8w",
+        "miriam": "00000002",
+        "nif": "0000-02655",
+        "omics": "02752",
+        "scr": "002088"
+      }
     },
     "synonyms": [
       "CHEBI",
@@ -8983,7 +9144,12 @@
       "description": "ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data).\nThe data is abstracted and curated from the primary scientific literature, and cover a significant fraction of the SAR and discovery of modern drugs\nWe attempt to normalise the bioactivities into a uniform set of end-points and units where possible, and also to tag the links between a molecular target and a published assay with a set of varying confidence levels. Additional data on clinical progress of compounds is being integrated into ChEMBL at the current time.",
       "homepage": "https://www.ebi.ac.uk/chembl/",
       "name": "ChEMBL",
-      "prefix": "r3d100010539"
+      "prefix": "r3d100010539",
+      "xrefs": {
+        "fairsharing": "fairsharing.m3jtpg",
+        "omics": "02731",
+        "scr": "014042"
+      }
     },
     "synonyms": [
       "ChEMBL",
@@ -9466,7 +9632,14 @@
       "description": "ChemSpider is a free chemical structure database providing fast access to over 58 million structures, properties and associated information. By integrating and linking compounds from more than 400 data sources, ChemSpider enables researchers to discover the most comprehensive view of freely available chemical data from a single online search. It is owned by the Royal Society of Chemistry.\nChemSpider builds on the collected sources by adding additional properties, related information and links back to original data sources. ChemSpider offers text and structure searching to find compounds of interest and provides unique services to improve this data by curation and annotation and to integrate it with users’ applications.",
       "homepage": "http://www.chemspider.com/",
       "name": "ChemSpider",
-      "prefix": "r3d100010205"
+      "prefix": "r3d100010205",
+      "synonyms": [
+        "Search and share chemistry"
+      ],
+      "xrefs": {
+        "nlx": "152101",
+        "scr": "006360"
+      }
     },
     "synonyms": [
       "ChemSpiderID",
@@ -10391,7 +10564,12 @@
       "description": "ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. ClinVar thus facilitates access to and communication about the relationships asserted between human variation and observed health status, and the history of that interpretation. ClinVar processes submissions reporting variants found in patient samples, assertions made regarding their clinical significance, information about the submitter, and other supporting data. The alleles described in submissions are mapped to reference sequences, and reported according to the HGVS standard. ClinVar then presents the data for interactive users as well as those wishing to use ClinVar in daily workflows and other local applications. ClinVar works in collaboration with interested organizations to meet the needs of the medical genetics community as efficiently and effectively as possible",
       "homepage": "https://www.ncbi.nlm.nih.gov/clinvar/",
       "name": "ClinVar",
-      "prefix": "r3d100013331"
+      "prefix": "r3d100013331",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.wx5r6f",
+        "nlx": "151671",
+        "scr": "006169"
+      }
     },
     "wikidata": {
       "database": "Q20023123",
@@ -12632,7 +12810,13 @@
       "description": "The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms, entered into the IntAct molecular interaction database (https://www.ebi.ac.uk/intact/). Data includes protein-only complexes as well as protein-small molecule and protein-nucleic acid complexes. All complexes are derived from physical molecular interaction evidences extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background. All complexes are tagged with Evidence and Conclusion Ontology codes to indicate the type of evidence available for each entry.",
       "homepage": "https://www.ebi.ac.uk/complexportal/",
       "name": "Complex Portal",
-      "prefix": "r3d100013295"
+      "prefix": "r3d100013295",
+      "synonyms": [
+        "CP"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.wP3t2"
+      }
     },
     "synonyms": [
       "ComplexPortal"
@@ -12936,7 +13120,10 @@
       "description": "CorrDB has data of cattle, relating to meat production, milk production, growth, health, and others. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.",
       "homepage": "https://www.animalgenome.org/cgi-bin/CorrDB/index",
       "name": "CorrDB",
-      "prefix": "r3d100011496"
+      "prefix": "r3d100011496",
+      "synonyms": [
+        "Animal Trait Correlation Database"
+      ]
     }
   },
   "corum": {
@@ -13538,7 +13725,12 @@
       "description": "CryptoDB is an integrated genomic and functional genomic database for the parasite Cryptosporidium and other related genera. CryptoDB integrates whole genome sequence and annotation along with experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.",
       "homepage": "https://cryptodb.org/cryptodb/app",
       "name": "CryptoDB",
-      "prefix": "r3d100012265"
+      "prefix": "r3d100012265",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.t3nprm",
+        "miriam": "00000149",
+        "scr": "013455"
+      }
     }
   },
   "csa": {
@@ -14249,7 +14441,16 @@
       "description": "The US BRAIN Initiative archive for publishing and sharing neurophysiology data including electrophysiology, optophysiology, and behavioral time-series, and images from immunostaining experiments.",
       "homepage": "https://dandiarchive.org/",
       "name": "DANDI",
-      "prefix": "r3d100013638"
+      "prefix": "r3d100013638",
+      "synonyms": [
+        "DANDI Archive",
+        "Distributed Archives for Neurophysiology Data Integration"
+      ],
+      "xrefs": {
+        "biodbcore": "001838",
+        "fairsharing.legacy": "3322",
+        "scr": "017571"
+      }
     }
   },
   "darc": {
@@ -14943,7 +15144,16 @@
       "description": "The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events.\n***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***",
       "homepage": "https://www.ncbi.nlm.nih.gov/snp/",
       "name": "dbSNP",
-      "prefix": "r3d100010652"
+      "prefix": "r3d100010652",
+      "synonyms": [
+        "Database for short genetic variations",
+        "SNV"
+      ],
+      "xrefs": {
+        "nif": "0000-02734",
+        "omics": "00264",
+        "scr": "002338"
+      }
     },
     "uniprot": {
       "category": "Genetic variation databases",
@@ -15562,7 +15772,14 @@
       "description": "DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active phosphatases, their experimentally verified protein and non-protein substrates and dephosphorylation site information, and pathways in which they are involved. It also provides links to popular kinase databases and protein-protein interaction databases for these phosphatases and substrates. DEPOD aims to be a valuable resource for studying human phosphatases and their substrate specificities and molecular mechanisms; phosphatase-targeted drug discovery and development; connecting phosphatases with kinases through their common substrates; completing the human phosphorylation/dephosphorylation network.",
       "homepage": "http://depod.bioss.uni-freiburg.de/",
       "name": "DEPOD",
-      "prefix": "r3d100011936"
+      "prefix": "r3d100011936",
+      "synonyms": [
+        "DEPhOsphorylation Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.q9j2e3",
+        "miriam": "00000428"
+      }
     },
     "uniprot": {
       "category": "PTM databases",
@@ -15866,7 +16083,17 @@
       "description": "dictyBase is an integrated genetic and literature database that contains published Dictyostelium discoideum literature, genes, expressed sequence tags (ESTs), as well as the chromosomal and mitochondrial genome sequences. Direct access to the genome browser, a Blast search tool, the Dictyostelium Stock Center, research tools, colleague databases, and much much more are just a mouse click away. Dictybase is a genome portal for the Amoebozoa. dictyBase is funded by a grant from the National Institute for General Medical Sciences.",
       "homepage": "http://dictybase.org/",
       "name": "dictybase",
-      "prefix": "r3d100010586"
+      "prefix": "r3d100010586",
+      "synonyms": [
+        "Dictyostelium discoideum"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.4shj9c",
+        "miriam": "00100367",
+        "nif": "0000-02751",
+        "omics": "03158",
+        "scr": "006643"
+      }
     },
     "synonyms": [
       "dictyBase"
@@ -16364,7 +16591,14 @@
       "description": "The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part.  DisProt is a community resource annotating protein sequences for intrinsically disorder regions from the literature.\nIt classifies intrinsic disorder based on experimental methods and three ontologies for molecular function, transition and binding partner.",
       "homepage": "http://www.disprot.org/",
       "name": "DisProt",
-      "prefix": "r3d100010561"
+      "prefix": "r3d100010561",
+      "synonyms": [
+        "Database of Protein Disorder"
+      ],
+      "xrefs": {
+        "nif": "0000-02754",
+        "scr": "007097"
+      }
     },
     "uniprot": {
       "category": "Family and domain databases",
@@ -17514,7 +17748,17 @@
       "description": "The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The latest release of DrugBank (version 5.1.1, released 2018-07-03) contains 11,881 drug entries including 2,526 approved small molecule drugs, 1,184 approved biotech (protein/peptide) drugs, 129 nutraceuticals and over 5,751 experimental drugs. Additionally, 5,132 non-redundant protein (i.e. drug target/enzyme/transporter/carrier) sequences are linked to these drug entries. Each DrugCard entry contains more than 200 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data.",
       "homepage": "https://go.drugbank.com/",
       "name": "DrugBank",
-      "prefix": "r3d100010544"
+      "prefix": "r3d100010544",
+      "synonyms": [
+        "DrugBank Online",
+        "Open Data Drug & Drug Target Database"
+      ],
+      "xrefs": {
+        "fairsharing": "fairsharing.353yat",
+        "miriam": "00000102",
+        "nif": "0000-00417",
+        "scr": "002700"
+      }
     },
     "synonyms": [
       "DRUGBANK_ID",
@@ -17683,7 +17927,16 @@
       "description": "The DSMZ is the most comprehensive biological resource center worldwide. Being one of the world's largest collections, the DSMZ currently comprises more than 73,700 items, including about 31,900 different bacterial and 6,600 fungal strains, 840 human and animal cell lines, 1,500 plant viruses and antisera, 700 bacteriophages and 19,000 different types of bacterial genomic DNA. All biological materials accepted in the DSMZ collection are subject to extensive quality control and physiological and molecular characterization by our central services. In addition, DSMZ provides an extensive documentation and detailed diagnostic information on the biological materials. The unprecedented diversity and quality management of its bioresources render the DSMZ an internationally renowned supplier for science, diagnostic laboratories, national reference centers, as well as industrial partners.",
       "homepage": "https://www.dsmz.de/",
       "name": "DSMZ",
-      "prefix": "r3d100010219"
+      "prefix": "r3d100010219",
+      "synonyms": [
+        "Deutsche Sammlung von Mikroorganismen und Zellkulturen",
+        "Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures",
+        "Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen"
+      ],
+      "xrefs": {
+        "nif": "0000-10209",
+        "scr": "001711"
+      }
     },
     "uri_format": "https://www.dsmz.de/collection/catalogue/details/culture/$1"
   },
@@ -17836,7 +18089,11 @@
       "description": "Groundbreaking biomedical research requires access to cutting edge scientific resources; however such resources are often invisible beyond the laboratories or universities where they were developed. eagle-i is a discovery platform that helps biomedical scientists find previously invisible, but highly valuable, resources.",
       "homepage": "https://www.eagle-i.net/",
       "name": "eagle-i",
-      "prefix": "r3d100011564"
+      "prefix": "r3d100011564",
+      "xrefs": {
+        "nlx": "143592",
+        "scr": "013153"
+      }
     },
     "uri_format": "http://hawaii.eagle-i.net/i/$1"
   },
@@ -18202,7 +18459,15 @@
       "description": "EchoBase is a database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655.",
       "homepage": "https://www.york.ac.uk/res/thomas/index.cfm",
       "name": "EchoBase",
-      "prefix": "r3d100011646"
+      "prefix": "r3d100011646",
+      "synonyms": [
+        "an integrated post-genomic database for E.coli"
+      ],
+      "xrefs": {
+        "miriam": "00000200",
+        "nif": "0000-02781",
+        "scr": "002430"
+      }
     },
     "uniprot": {
       "category": "Organism-specific databases",
@@ -18554,7 +18819,17 @@
       "description": "The repository is no longer available. >>>!!!<<< 2019-12-02: no more access to EcoGene >>>!!!<<<",
       "homepage": "http://ecogene.org/",
       "name": "EcoGene",
-      "prefix": "r3d100010546"
+      "prefix": "r3d100010546",
+      "synonyms": [
+        "Escherichia coli strain K12 genome database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.3q3kvn",
+        "miriam": "00000163",
+        "nif": "0000-02784",
+        "omics": "03184",
+        "scr": "002437"
+      }
     }
   },
   "ecolexicon": {
@@ -20005,7 +20280,17 @@
       "description": "The ENCODE Encyclopedia organizes the most salient analysis products into annotations, and provides tools to search and visualize them. The Encyclopedia has two levels of annotations:\nIntegrative-level annotations integrate multiple types of experimental data and ground level annotations. \nGround-level annotations are derived directly from the experimental data, typically produced by uniform processing pipelines.",
       "homepage": "https://www.encodeproject.org/",
       "name": "ENCODE",
-      "prefix": "r3d100013051"
+      "prefix": "r3d100013051",
+      "synonyms": [
+        "ENCODE  Encyclopedia",
+        "Encyclopedia of DNA Elements"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.7ykpy5",
+        "miriam": "00000662",
+        "omics": "00532",
+        "scr": "015482"
+      }
     }
   },
   "enm": {
@@ -20202,7 +20487,17 @@
       "description": "The Ensembl project produces genome databases for vertebrates and other eukaryotic species. Ensembl is a joint project between the European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system that produces and maintains automatic annotation on selected genomes.The Ensembl project was started in 1999, some years before the draft human genome was completed. Even at that early stage it was clear that manual annotation of 3 billion base pairs of sequence would not be able to offer researchers timely access to the latest data. The goal of Ensembl was therefore to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data. Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom.",
       "homepage": "https://www.ensembl.org/index.html",
       "name": "Ensembl",
-      "prefix": "r3d100010228"
+      "prefix": "r3d100010228",
+      "synonyms": [
+        "e!"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.fx0mw7",
+        "miriam": "00100011",
+        "nif": "0000-21145",
+        "omics": "01647",
+        "scr": "002344"
+      }
     },
     "synonyms": [
       "Ensembl"
@@ -20296,7 +20591,16 @@
       "description": "This site provides access to complete, annotated genomes from bacteria and archaea (present in the European Nucleotide Archive) through the Ensembl graphical user interface (genome browser). Ensembl Bacteria contains genomes from annotated INSDC records that are loaded into Ensembl multi-species databases, using the INSDC annotation import pipeline.",
       "homepage": "http://bacteria.ensembl.org/index.html",
       "name": "Ensembl Bacteria",
-      "prefix": "r3d100011195"
+      "prefix": "r3d100011195",
+      "synonyms": [
+        "e!EnsemblBacteria"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.zsgmvd",
+        "miriam": "00000202",
+        "nif": "0000-33711",
+        "scr": "008679"
+      }
     },
     "uniprot": {
       "category": "Genome annotation databases",
@@ -20379,7 +20683,16 @@
       "description": "EnsemblFungi is a genome-centric portal for fungal species. It is a project to maintain annotation on selected genomes.",
       "homepage": "http://fungi.ensembl.org/index.html",
       "name": "Ensembl Fungi",
-      "prefix": "r3d100011196"
+      "prefix": "r3d100011196",
+      "synonyms": [
+        "e!EnsemblFungi"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.bg5xqs",
+        "miriam": "00000206",
+        "nif": "0000-33718",
+        "scr": "008681"
+      }
     },
     "uniprot": {
       "category": "Genome annotation databases",
@@ -20462,7 +20775,16 @@
       "description": "Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest.",
       "homepage": "http://metazoa.ensembl.org/index.html",
       "name": "Ensembl Metazoa",
-      "prefix": "r3d100011198"
+      "prefix": "r3d100011198",
+      "synonyms": [
+        "e!EnsemblMetazoa"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.c23cqq",
+        "miriam": "00000204",
+        "nif": "0000-33714",
+        "scr": "000800"
+      }
     },
     "uniprot": {
       "category": "Genome annotation databases",
@@ -20617,7 +20939,15 @@
       "description": "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.",
       "homepage": "https://envipath.org/",
       "name": "enviPath",
-      "prefix": "r3d100012715"
+      "prefix": "r3d100012715",
+      "synonyms": [
+        "The enironmental contaminant biotransormation pathway resource",
+        "including: Biocatalysis/Biodegradation Database EAWAG PPS Rules"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.g0c5qn",
+        "omics": "11129"
+      }
     }
   },
   "envo": {
@@ -20943,7 +21273,10 @@
       "description": "EOL’s platforms and instruments collect large and often unique data sets that must be validated, archived and made available to the research community. The goal of EOL data services is to advance science through delivering high-quality project data and metadata in ways that are as transparent, secure, and easily accessible as possible - today and into the future. By adhering to accepted standards in data formats and data services, EOL provides infrastructure to facilitate discovery and direct access to data and software from state-of-the-art commercial and locally-developed applications. EOL’s data services are committed to the highest standard of data stewardship from collection to validation to archival.",
       "homepage": "http://www.eol.ucar.edu/",
       "name": "EOL",
-      "prefix": "r3d100011663"
+      "prefix": "r3d100011663",
+      "synonyms": [
+        "Earth Observing Laboratory"
+      ]
     }
   },
   "eolife": {
@@ -21875,7 +22208,12 @@
       "description": "FaceBase is a collaborative NIDCR-funded project that houses comprehensive data in support of advancing research into craniofacial development and malformation. It serves as a community resource by curating large datasets of a variety of types from the craniofacial research community and sharing them via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this project is to facilitate cooperation and collaboration between the central coordinating center (ie, the Hub) and the craniofacial research community.",
       "homepage": "https://www.facebase.org",
       "name": "FaceBase",
-      "prefix": "r3d100013263"
+      "prefix": "r3d100013263",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.mqvqde",
+        "nlx": "151372",
+        "scr": "005998"
+      }
     }
   },
   "fairsharing": {
@@ -21934,7 +22272,17 @@
       "description": "FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on FAIRsharing, you not only gain credit for your work, but you increase its visibility outside of your direct domain, so reducing the potential for unnecessary reinvention and proliferation of standards and databases.",
       "homepage": "https://fairsharing.org/",
       "name": "FAIRsharing",
-      "prefix": "r3d100010142"
+      "prefix": "r3d100010142",
+      "synonyms": [
+        "formerly: biosharing"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.2abjs5",
+        "miriam": "00100463",
+        "nlx": "143602",
+        "omics": "17902",
+        "scr": "004177"
+      }
     }
   },
   "faldo": {
@@ -22736,7 +23084,12 @@
       "description": "Fishbase is a global species database and encyclopedia of over 30,000 species and subspecies of fishes that is searchable by common name, genus, species, geography, family, ecosystem, references literature, tools, etc. Links to other, related databases such as the Catalog of Fishes, GenBack, and LarvalBase. Associated with a partner journal, Acta Ichthyologica et Piscatoria. With mirror sites in English, German, French Spanish, Portuguese, French, Swedish, Chinese and Arabian language.",
       "homepage": "https://www.fishbase.org/home.htm",
       "name": "Fishbase",
-      "prefix": "r3d100010912"
+      "prefix": "r3d100010912",
+      "xrefs": {
+        "nlx": "39009",
+        "omics": "14884",
+        "scr": "004376"
+      }
     },
     "synonyms": [
       "fishbase"
@@ -22999,7 +23352,11 @@
       "description": "FlowRepository is a web-based application accessible from a web browser that serves as an online database of flow cytometry experiments where users can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field. FlowRepository is funded by the International Society for Advancement of Cytometry (ISAC) and powered by the Cytobank engine specifically extended for the purposes of this repository. FlowRepository has been developed by forking and extending Cytobank in 2011.",
       "homepage": "http://flowrepository.org/",
       "name": "FlowRepository",
-      "prefix": "r3d100011280"
+      "prefix": "r3d100011280",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.veg2d6",
+        "scr": "013779"
+      }
     }
   },
   "flu": {
@@ -23166,7 +23523,17 @@
       "description": "FlyBase is a database of genetic, genomic and functional data for Drosophila species, with a focus on the model organism Drosophila melanogaster.FlyBase contains a complete annotation of the Drosophila melanogaster genome that is updated several times per year.It also includes a searchable bibliography of research on Drosophila genetics in the last century. The site also provides a large database of images illustrating the full genome, and several movies detailing embryogenesis.",
       "homepage": "http://flybase.org/",
       "name": "FlyBase",
-      "prefix": "r3d100010591"
+      "prefix": "r3d100010591",
+      "synonyms": [
+        "A Database of Drosophila Genes and Genomes"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.wrvze3",
+        "miriam": "00000030",
+        "nif": "0000-00558",
+        "omics": "01649",
+        "scr": "006549"
+      }
     },
     "synonyms": [
       "FB",
@@ -23520,7 +23887,10 @@
       "description": "FooDB is the world’s largest and most comprehensive resource on food constituents, chemistry and biology. It provides information on both macronutrients and micronutrients, including many of the constituents that give foods their flavor, color, taste, texture and aroma.",
       "homepage": "https://foodb.ca/",
       "name": "FooDB",
-      "prefix": "r3d100012152"
+      "prefix": "r3d100012152",
+      "synonyms": [
+        "Food Database"
+      ]
     },
     "synonyms": [
       "foodb"
@@ -24239,7 +24609,16 @@
       "description": "FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.",
       "homepage": "http://www.fungidb.org/fungidb/",
       "name": "FungiDB",
-      "prefix": "r3d100011906"
+      "prefix": "r3d100011906",
+      "synonyms": [
+        "The Fungal and Oomycete Genomics Resource"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.xf30yc",
+        "nlx": "151401",
+        "omics": "03103",
+        "scr": "006013"
+      }
     }
   },
   "fungorum": {
@@ -25047,7 +25426,13 @@
       "description": "GenBank® is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.",
       "homepage": "https://www.ncbi.nlm.nih.gov/genbank/",
       "name": "GenBank",
-      "prefix": "r3d100010528"
+      "prefix": "r3d100010528",
+      "xrefs": {
+        "fairsharing": "fairsharing.9kahy4",
+        "nif": "0000-02873",
+        "omics": "01650",
+        "scr": "002760"
+      }
     },
     "uniprot": {
       "category": "Sequence databases",
@@ -25127,7 +25512,16 @@
       "description": "GeneCards is a searchable, integrative database that provides comprehensive, user-friendly information on all annotated and predicted human genes. It automatically integrates gene-centric data from ~125 web sources, including genomic, transcriptomic, proteomic, genetic, clinical and functional information.",
       "homepage": "https://www.genecards.org/",
       "name": "GeneCards",
-      "prefix": "r3d100012015"
+      "prefix": "r3d100012015",
+      "synonyms": [
+        "The Human Gene Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.g7jbvn",
+        "nif": "0000-02879",
+        "omics": "01652",
+        "scr": "002773"
+      }
     },
     "uniprot": {
       "category": "Organism-specific databases",
@@ -25230,7 +25624,13 @@
       "description": ">>>!!!<<< GeneDB will be taken offline 1st of August 2021, as none of the genomes are curated at Sanger anymore. All genomes on GeneDB can now be found on PlasmoDB, FungiDB, TriTrypDB and Wormbase Parasite.   >>>!!!<<<",
       "homepage": "https://www.genedb.org/",
       "name": "GeneDB",
-      "prefix": "r3d100010626"
+      "prefix": "r3d100010626",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.j7esqq",
+        "miriam": "00100139",
+        "nif": "0000-02880",
+        "scr": "002774"
+      }
     },
     "uniprot": {
       "category": "Genome annotation databases",
@@ -25843,7 +26243,10 @@
       "description": "The GeoNames geographical database covers all countries and contains over eight million placenames that are available for download free of charge.",
       "homepage": "https://www.geonames.org/",
       "name": "GeoNames",
-      "prefix": "r3d100010245"
+      "prefix": "r3d100010245",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.56a0Uj"
+      }
     },
     "synonyms": [
       "Geomames",
@@ -25993,7 +26396,14 @@
       "description": "Giardia lamblia is a significant, environmentally transmitted, human pathogen and an amitochondriate protist. It is a major contributor to the enormous worldwide burden of human diarrheal diseases, yet the basic biology of this parasite is not well understood. No virulence factor has been identified. The Giardia lamblia genome contains only 12 million base pairs distributed onto five chromosomes. Its analysis promises to provide insights about the origins of nuclear genome organization, the metabolic pathways used by parasitic protists, and the cellular biology of host interaction and avoidance of host immune systems.\n\nSince the divergence of Giardia lamblia lies close to the transition between eukaryotes and prokaryotes in universal ribosomal RNA phylogenies, it is a valuable, if not unique, model for gaining basic insights into genetic innovations that led to formation of eukaryotic cells. In evolutionary terms, the divergence of this organism is at least twice as ancient as the common ancestor for yeast and man. A detailed study of its genome will provide insights into an early evolutionary stage of eukaryotic chromosome organization as well as other aspects of the prokaryotic / eukaryotic divergence.",
       "homepage": "http://giardiadb.org/giardiadb/",
       "name": "GiardiaDB",
-      "prefix": "r3d100012458"
+      "prefix": "r3d100012458",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.e7skwg",
+        "miriam": "00000151",
+        "nif": "0000-02908",
+        "omics": "03161",
+        "scr": "013377"
+      }
     }
   },
   "github": {
@@ -26036,7 +26446,12 @@
       "description": "GitHub is the best place to share code with friends, co-workers, classmates, and complete strangers. Over three million people use GitHub to build amazing things together. With the collaborative features of GitHub.com, our desktop and mobile apps, and GitHub Enterprise, it has never been easier for individuals and teams to write better code, faster. Originally founded by Tom Preston-Werner, Chris Wanstrath, and PJ Hyett to simplify sharing code, GitHub has grown into the largest code host in the world.",
       "homepage": "https://github.com",
       "name": "GitHub",
-      "prefix": "r3d100010375"
+      "prefix": "r3d100010375",
+      "xrefs": {
+        "biodbcore": "001160",
+        "nlx": "156051",
+        "scr": "002630"
+      }
     }
   },
   "github.issue": {
@@ -26278,7 +26693,14 @@
       "description": "<<<<<!!! With the implementation of GlyTouCan (https://glytoucan.org/) the mission of GlycomeDB comes to an end. !!!>>>>>\nWith the new database, GlycomeDB, it is possible to get an overview of all carbohydrate structures in the different databases and to crosslink common structures in the different databases. Scientists are now able to search for a particular structure in the meta database and get information about the occurrence of this structure in the five carbohydrate structure databases.",
       "homepage": "http://www.glycome-db.org/",
       "name": "GlycomeDB",
-      "prefix": "r3d100011527"
+      "prefix": "r3d100011527",
+      "synonyms": [
+        "A carbohydrate structure metadatabase"
+      ],
+      "xrefs": {
+        "nlx": "149174",
+        "scr": "005717"
+      }
     }
   },
   "glyconavi": {
@@ -26414,7 +26836,13 @@
       "description": "GlyTouCan is the international glycan structure repository. This repository is a freely available, uncurated registry for glycan structures that assigns globally unique accession numbers to any glycan independent of the level of information provided by the experimental method used to identify the structure(s). Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered as long as there are no inconsistencies in the structure.",
       "homepage": "https://glytoucan.org/",
       "name": "GlyTouCan",
-      "prefix": "r3d100012388"
+      "prefix": "r3d100012388",
+      "synonyms": [
+        "International Glycan Repository"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.5Pze7l"
+      }
     }
   },
   "gmd": {
@@ -26738,7 +27166,15 @@
       "description": "GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Research Institute for Agriculture, Food and Environment. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.",
       "homepage": "https://urgi.versailles.inrae.fr/gnpis",
       "name": "GnpIS",
-      "prefix": "r3d100012647"
+      "prefix": "r3d100012647",
+      "synonyms": [
+        "Genetic and Genomic Information System"
+      ],
+      "xrefs": {
+        "fairsharing": "fairsharing.dw22y3",
+        "miriam": "00100831",
+        "omics": "11988"
+      }
     }
   },
   "go": {
@@ -27891,7 +28327,16 @@
       "description": "Greengenes is an Earth Sciences website that assists clinical and environmental microbiologists from around the globe in classifying microorganisms from their local environments. A 16S rRNA gene database addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.",
       "homepage": "https://greengenes.secondgenome.com/",
       "name": "Greengenes",
-      "prefix": "r3d100010549"
+      "prefix": "r3d100010549",
+      "synonyms": [
+        "The Greengenes Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.bpxgb6",
+        "miriam": "00000165",
+        "nif": "0000-02927",
+        "scr": "002830"
+      }
     }
   },
   "grid": {
@@ -28267,7 +28712,15 @@
       "description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research. The key components are: (1) a molecular atlas of gene expression for the developing organs of the GenitoUrinary (GU) tract; (2) a high resolution molecular anatomy that highlights development of the GU system; (3) mouse strains to facilitate developmental and functional studies within the GU system; (4) tutorials describing GU organogenesis; and (5) rapid access to primary data via the GUDMAP database.",
       "homepage": "https://www.gudmap.org/index.html",
       "name": "GUDMAP",
-      "prefix": "r3d100012193"
+      "prefix": "r3d100012193",
+      "synonyms": [
+        "GenitoUrinary Development Molecular Anatomy Project"
+      ],
+      "xrefs": {
+        "nif": "0000-33426",
+        "nlx": "152871",
+        "scr": "001554"
+      }
     }
   },
   "gwascentral.marker": {
@@ -30327,7 +30780,14 @@
       "description": "The human pluripotent stem cell registry (hPSCreg) is a public registry and data portal for human embryonic and induced pluripotent stem cell lines (hESC and hiPSC). The Registry provides comprehensive and standardized biological and legal information as well as tools to search and compare information from multiple hPSC sources and hence addresses a translational research need. To facilitate unambiguous identification over different resources, hPSCreg automatically creates a unique standardized name (identifier) for each cell line registered. In addition to biological information, hPSCreg stores extensive data about ethical standards regarding cell sourcing and conditions for application and privacy protection. hPSCreg is the first global registry that holds both, manually validated scientific and ethical information on hPSC lines, and provides access by means of a user-friendly, mobile-ready web application.",
       "homepage": "https://hpscreg.eu/",
       "name": "hPSCreg",
-      "prefix": "r3d100012863"
+      "prefix": "r3d100012863",
+      "synonyms": [
+        "human Pluripotent Stem Cell registry"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.7C0aVE",
+        "miriam": "00100898"
+      }
     }
   },
   "hsapdv": {
@@ -32097,7 +32557,14 @@
       "description": "The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License",
       "homepage": "https://www.imexconsortium.org/",
       "name": "IMEx",
-      "prefix": "r3d100010669"
+      "prefix": "r3d100010669",
+      "synonyms": [
+        "The International Molecular Exchange Consortium"
+      ],
+      "xrefs": {
+        "nif": "0000-00447",
+        "scr": "002805"
+      }
     }
   },
   "img.gene": {
@@ -33019,7 +33486,12 @@
       "description": "IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.",
       "homepage": "https://www.ebi.ac.uk/intact/",
       "name": "IntAct",
-      "prefix": "r3d100010671"
+      "prefix": "r3d100010671",
+      "xrefs": {
+        "nif": "0000-03026",
+        "omics": "01918",
+        "scr": "006944"
+      }
     },
     "uniprot": {
       "category": "Protein-protein interaction databases",
@@ -33233,7 +33705,17 @@
       "description": "InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.",
       "homepage": "http://www.ebi.ac.uk/interpro/beta/",
       "name": "InterPro",
-      "prefix": "r3d100010798"
+      "prefix": "r3d100010798",
+      "synonyms": [
+        "protein sequence analysis & classification"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.pda11d",
+        "miriam": "00000011",
+        "nif": "0000-03035",
+        "omics": "01694",
+        "scr": "006695"
+      }
     },
     "synonyms": [
       "IP",
@@ -33367,7 +33849,16 @@
       "description": "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID.",
       "homepage": "https://wodaklab.org/iRefWeb/",
       "name": "iRefWeb",
-      "prefix": "r3d100012725"
+      "prefix": "r3d100012725",
+      "synonyms": [
+        "Interaction Reference Index Web Interface"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.t31wcb",
+        "nif": "0000-20861",
+        "omics": "02922",
+        "scr": "008118"
+      }
     }
   },
   "iro": {
@@ -33654,7 +34145,10 @@
       "description": "Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world.",
       "homepage": "https://www.itis.gov/",
       "name": "ITIS",
-      "prefix": "r3d100011213"
+      "prefix": "r3d100011213",
+      "synonyms": [
+        "Integrated Taxonomic Information System"
+      ]
     },
     "uri_format": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1",
     "wikidata": {
@@ -34241,7 +34735,10 @@
       "description": "Kaggle is a platform for predictive modelling and analytics competitions in which statisticians and data miners compete to produce the best models for predicting and describing the datasets uploaded by companies and users. This crowdsourcing approach relies on the fact that there are countless strategies that can be applied to any predictive modelling task and it is impossible to know beforehand which technique or analyst will be most effective.",
       "homepage": "https://www.kaggle.com/datasets",
       "name": "Kaggle",
-      "prefix": "r3d100012705"
+      "prefix": "r3d100012705",
+      "synonyms": [
+        "Your home for data science"
+      ]
     }
   },
   "kclb": {
@@ -35520,7 +36017,10 @@
       "description": "LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data.",
       "homepage": "https://licebase.org/",
       "name": "LiceBase",
-      "prefix": "r3d100013547"
+      "prefix": "r3d100013547",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.c7w81a"
+      }
     }
   },
   "ligandbook": {
@@ -36670,7 +37170,15 @@
       "description": "The Maize Genetics and Genomics Database focuses on collecting data related to the crop plant and model organism Zea mays. The project's goals are to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models. MaizeGDB also aims to make the Maize Newsletter available, and provide support services to the community of maize researchers.\nMaizeGDB is working with the Schnable lab, the Panzea project, The Genome Reference Consortium, and iPlant Collaborative to create a plan for archiving, dessiminating, visualizing, and analyzing diversity data.\nMMaizeGDB is short for Maize Genetics/Genomics Database. It is a USDA/ARS funded project to integrate the data found in MaizeDB and ZmDB into a single schema, develop an effective interface to access this data, and develop additional tools to make data analysis easier. Our goal in the long term is a true next-generation online maize database.aize genetics and genomics database.",
       "homepage": "http://www.maizegdb.org/",
       "name": "MaizeGDB",
-      "prefix": "r3d100010795"
+      "prefix": "r3d100010795",
+      "synonyms": [
+        "Maize Genetics and Genomics Database"
+      ],
+      "xrefs": {
+        "nif": "0000-03096",
+        "omics": "01655",
+        "scr": "006600"
+      }
     },
     "synonyms": [
       "MaizeGDB"
@@ -37026,7 +37534,16 @@
       "description": "MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.\nMatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009",
       "homepage": "http://matrixdb.univ-lyon1.fr/",
       "name": "MatrixDB",
-      "prefix": "r3d100010672"
+      "prefix": "r3d100010672",
+      "synonyms": [
+        "Extracellular Matrix interactions DataBase"
+      ],
+      "xrefs": {
+        "issn": "2426-6949",
+        "nif": "0000-10226",
+        "omics": "01918",
+        "scr": "001727"
+      }
     },
     "uri_format": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"
   },
@@ -37922,7 +38439,13 @@
       "description": "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments.",
       "homepage": "https://www.ebi.ac.uk/metabolights/",
       "name": "MetaboLights",
-      "prefix": "r3d100011556"
+      "prefix": "r3d100011556",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.kkdpxe",
+        "miriam": "00000380",
+        "omics": "02535",
+        "scr": "014663"
+      }
     },
     "wikidata": {
       "database": "Q24174701",
@@ -38004,7 +38527,17 @@
       "description": "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. \nMetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.\nMetaCyc applications include: Online encyclopedia of metabolism, Prediction of metabolic pathways in sequenced genomes, Support metabolic engineering via enzyme database, Metabolite database aids. metabolomics research.",
       "homepage": "https://metacyc.org/",
       "name": "MetaCyc",
-      "prefix": "r3d100011294"
+      "prefix": "r3d100011294",
+      "synonyms": [
+        "Metabolic Pathway Database",
+        "a member of the BioCyc database collection"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.yytevr",
+        "nif": "0000-03114",
+        "omics": "02718",
+        "scr": "007778"
+      }
     },
     "synonyms": [
       "MetaCyc"
@@ -38204,7 +38737,15 @@
       "description": "METLIN represents the largest MS/MS collection of data with the database generated at multiple collision energies and in positive and negative ionization modes. The data is generated on multiple instrument types including SCIEX, Agilent, Bruker and Waters QTOF mass spectrometers.",
       "homepage": "https://metlin.scripps.edu/landing_page.php?pgcontent=mainPage",
       "name": "Metlin",
-      "prefix": "r3d100012311"
+      "prefix": "r3d100012311",
+      "synonyms": [
+        "The original and most comprehensive MS/MS metabolite database"
+      ],
+      "xrefs": {
+        "nlx": "158116",
+        "omics": "02633",
+        "scr": "010500"
+      }
     }
   },
   "mex": {
@@ -39158,7 +39699,13 @@
       "description": "The MicroScope platform is an informatics infrastructure dedicated to the annotation and comparative analysis of microbial genomes and metagenomes.",
       "homepage": "http://www.genoscope.cns.fr/agc/microscope/home/index.php",
       "name": "MicroScope",
-      "prefix": "r3d100012928"
+      "prefix": "r3d100012928",
+      "synonyms": [
+        "Microbial Genome Annotation & Analysis Platform"
+      ],
+      "xrefs": {
+        "fairsharing": "/FAIRsharing.3t5qc3"
+      }
     }
   },
   "microsporidia": {
@@ -39612,7 +40159,11 @@
       "description": "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download. The miRBase Registry provides miRNA gene hunters with unique names for novel miRNA genes prior to publication of results.",
       "homepage": "http://www.mirbase.org/",
       "name": "miRBase",
-      "prefix": "r3d100010566"
+      "prefix": "r3d100010566",
+      "xrefs": {
+        "nif": "0000-03134",
+        "scr": "003152"
+      }
     },
     "uri_format": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1",
     "wikidata": {
@@ -40951,7 +41502,13 @@
       "description": "ModelDB is a curated database of published models in the broad domain of computational neuroscience. It addresses the need for access to such models in order to evaluate their validity and extend their use. It can handle computational models expressed in any textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment. The model source code doesn't even have to reside inside ModelDB; it just has to be available from some publicly accessible online repository or WWW site.",
       "homepage": "https://senselab.med.yale.edu/ModelDB/default.cshtml",
       "name": "ModelDB",
-      "prefix": "r3d100011330"
+      "prefix": "r3d100011330",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.5rb3fk",
+        "miriam": "00000131",
+        "nif": "0000-00004",
+        "scr": "007271"
+      }
     }
   },
   "molbase": {
@@ -42282,7 +42839,15 @@
       "description": "MycoBank is an on-line database aimed as a service to the mycological and scientific society by documenting mycological nomenclatural novelties (new names and combinations) and associated data, for example descriptions and illustrations. The nomenclatural novelties will each be allocated a unique MycoBank number that can be cited in the publication where the nomenclatural novelty is introduced. These numbers will also be used by the nomenclatural database Index Fungorum, with which MycoBank is associated.",
       "homepage": "http://www.mycobank.org/",
       "name": "MycoBank",
-      "prefix": "r3d100011222"
+      "prefix": "r3d100011222",
+      "synonyms": [
+        "Fungal databases, nomenclature and species banks"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.v8se8r",
+        "nlx": "91803",
+        "scr": "004950"
+      }
     }
   },
   "mzspec": {
@@ -42582,7 +43147,17 @@
       "description": "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to Europe researchers.",
       "homepage": "http://arabidopsis.info/",
       "name": "NASC",
-      "prefix": "r3d100010906"
+      "prefix": "r3d100010906",
+      "synonyms": [
+        "Nottingham Arabidopsis Stock Centre",
+        "The European Arabidopsis Stock Centre"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.2sqcxs",
+        "nlx": "56885",
+        "omics": "28815",
+        "scr": "004576"
+      }
     }
   },
   "nbn": {
@@ -42888,7 +43463,10 @@
       "description": "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.",
       "homepage": "https://www.ncbi.nlm.nih.gov/assembly",
       "name": "NCBI Assembly",
-      "prefix": "r3d100012688"
+      "prefix": "r3d100012688",
+      "xrefs": {
+        "omics": "10736"
+      }
     }
   },
   "ncbi.genome": {
@@ -42924,7 +43502,11 @@
       "description": "The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.",
       "homepage": "https://www.ncbi.nlm.nih.gov/genome",
       "name": "NCBI Genome",
-      "prefix": "r3d100010785"
+      "prefix": "r3d100010785",
+      "xrefs": {
+        "nif": "0000-02802",
+        "scr": "002474"
+      }
     },
     "uri_format": "https://www.ncbi.nlm.nih.gov/genome/$1"
   },
@@ -43085,7 +43667,17 @@
       "description": "The Gene database provides detailed information for known and predicted genes defined by nucleotide sequence or map position. Gene supplies gene-specific connections in the nexus of map, sequence, expression, structure, function, citation, and homology data. Unique identifiers are assigned to genes with defining sequences, genes with known map positions, and genes inferred from phenotypic information. These gene identifiers are used throughout NCBI's databases and tracked through updates of annotation. Gene includes genomes represented by NCBI Reference Sequences (or RefSeqs) and is integrated for indexing and query and retrieval from NCBI's Entrez and E-Utilities systems.",
       "homepage": "https://www.ncbi.nlm.nih.gov/gene?db=gene",
       "name": "NCBI Gene",
-      "prefix": "r3d100010650"
+      "prefix": "r3d100010650",
+      "synonyms": [
+        "Entrez Gene",
+        "Gene"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.5h3maw",
+        "nif": "0000-02801",
+        "omics": "01651",
+        "scr": "002473"
+      }
     },
     "synonyms": [
       "EGID",
@@ -43165,7 +43757,11 @@
       "description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.",
       "homepage": "http://www.ncbi.nlm.nih.gov/protein",
       "name": "NCBI Protein",
-      "prefix": "r3d100010776"
+      "prefix": "r3d100010776",
+      "xrefs": {
+        "nif": "0000-03178",
+        "scr": "003257"
+      }
     }
   },
   "ncbitaxon": {
@@ -43391,7 +43987,15 @@
       "description": "The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. The EMBL and DDBJ databases, as well as GenBank, now use the NCBI Taxonomy as the standard classification for nucleotide sequences. Taxonomy Contains the names and phylogenetic lineages of more than 160,000 organisms that have molecular data in the NCBI databases. New taxa are added to the Taxonomy database as data are deposited for them. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database.",
       "homepage": "https://www.ncbi.nlm.nih.gov/taxonomy",
       "name": "NCBI Taxonomy",
-      "prefix": "r3d100010415"
+      "prefix": "r3d100010415",
+      "synonyms": [
+        "Entrez Taxonomy"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.fj07xj",
+        "nif": "0000-03179",
+        "scr": "003256"
+      }
     },
     "synonyms": [
       "NCBI Taxonomy",
@@ -50023,7 +50627,13 @@
       "description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.",
       "homepage": "https://www.pathwaycommons.org/",
       "name": "Pathway Commons",
-      "prefix": "r3d100012731"
+      "prefix": "r3d100012731",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.5y3gdd",
+        "nif": "0000-20884",
+        "omics": "02761",
+        "scr": "002103"
+      }
     },
     "uniprot": {
       "category": "Enzyme and pathway databases",
@@ -50736,7 +51346,16 @@
       "description": "PDBj (Protein Data Bank Japan) provides a centralized PDB archive of macromolecular structures, integrated tools for data retrieval, visualization, and functional characterization. PDBj is supported by JST-NBDC and Osaka University.",
       "homepage": "https://pdbj.org/",
       "name": "PDBj",
-      "prefix": "r3d100010910"
+      "prefix": "r3d100010910",
+      "synonyms": [
+        "Protein Data Bank Japan"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.rs2815",
+        "nlx": "151484",
+        "omics": "07430",
+        "scr": "008912"
+      }
     },
     "synonyms": [
       "RCSB_PDB",
@@ -51289,7 +51908,14 @@
       "description": "The PeptideAtlas validates expressed proteins to provide eukaryotic genome data.  Peptide Atlas provides data to advance biological discoveries in humans.  The PeptideAtlas accepts proteomic data from high-throughput processes and encourages data submission.",
       "homepage": "http://www.peptideatlas.org/",
       "name": "PeptideAtlas",
-      "prefix": "r3d100010889"
+      "prefix": "r3d100010889",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.dvyrsz",
+        "miriam": "00000053",
+        "nif": "0000-03266",
+        "omics": "02454",
+        "scr": "006783"
+      }
     },
     "uniprot": {
       "category": "Proteomic databases",
@@ -51693,7 +52319,12 @@
       "description": "The Progenetix database provides an overview of copy number abnormalities in human cancer from currently 32548 array and chromosomal Comparative Genomic Hybridization (CGH) experiments, as well as Whole Genome or Whole Exome Sequencing (WGS, WES) studies. The cancer profile data in Progenetix was curated from 1031 articles  and represents 366 different cancer types, according to the International classification of Diseases in Oncology (ICD-O).",
       "homepage": "https://www.progenetix.org/",
       "name": "Progenetix",
-      "prefix": "r3d100012820"
+      "prefix": "r3d100012820",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.65tdnz",
+        "miriam": "00000600",
+        "omics": "02591"
+      }
     },
     "synonyms": [
       "Progenetix"
@@ -52038,7 +52669,14 @@
       "description": "Phenol-Explorer is the first comprehensive database on polyphenol content in foods",
       "homepage": "http://phenol-explorer.eu/",
       "name": "Phenol-Explorer",
-      "prefix": "r3d100012197"
+      "prefix": "r3d100012197",
+      "synonyms": [
+        "Database on Polyphenol Content in Foods"
+      ],
+      "xrefs": {
+        "nif": "0000-32996",
+        "scr": "008647"
+      }
     }
   },
   "phenx": {
@@ -53074,7 +53712,17 @@
       "description": "PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.",
       "homepage": "https://plasmodb.org/plasmo/app/",
       "name": "PlasmoDB",
-      "prefix": "r3d100011569"
+      "prefix": "r3d100011569",
+      "synonyms": [
+        "Plasmodium Genomics Resource"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.g4n8sw",
+        "miriam": "00000150",
+        "nif": "0000-03314",
+        "omics": "02765",
+        "scr": "013331"
+      }
     },
     "synonyms": [
       "ApiDB_PlasmoDB"
@@ -53815,7 +54463,17 @@
       "description": "PomBase is a comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets.",
       "homepage": "https://www.pombase.org/",
       "name": "Pombase",
-      "prefix": "r3d100011478"
+      "prefix": "r3d100011478",
+      "synonyms": [
+        "The scientific resource for fission yeast"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.8jsya3",
+        "miriam": "00000335",
+        "nlx": "144356",
+        "omics": "06183",
+        "scr": "006586"
+      }
     },
     "synonyms": [
       "PomBase"
@@ -55583,7 +56241,13 @@
       "description": "Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.",
       "homepage": "https://pubchem.ncbi.nlm.nih.gov/",
       "name": "PubChem",
-      "prefix": "r3d100010129"
+      "prefix": "r3d100010129",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.qt3w7z",
+        "nlx": "42691",
+        "omics": "02734",
+        "scr": "010578"
+      }
     },
     "synonyms": [
       "CID",
@@ -56596,7 +57260,17 @@
       "description": "Reactome is a manually curated, peer-reviewed pathway database, annotated by expert biologists and cross-referenced to bioinformatics databases. Its aim is to share information in the visual representations of biological pathways in a computationally accessible format. Pathway annotations are authored by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. These include NCBI Gene, Ensembl and UniProt databases, the UCSC and HapMap Genome Browsers, the KEGG Compound and ChEBI small molecule databases, PubMed, and Gene Ontology.",
       "homepage": "https://reactome.org/",
       "name": "Reactome",
-      "prefix": "r3d100010861"
+      "prefix": "r3d100010861",
+      "synonyms": [
+        "a curated pathway database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.tf6kj8",
+        "miriam": "00000018",
+        "nif": "0000-03390",
+        "omics": "02771",
+        "scr": "003485"
+      }
     },
     "synonyms": [
       "RE",
@@ -56733,7 +57407,14 @@
       "description": "The Restriction Enzyme Database is a collection of information about restriction enzymes, methylases, the microorganisms from which they have been isolated, recognition sequences, cleavage sites, methylation specificity, the commercial availability of the enzymes, and references - both published and unpublished observations (dating back to 1952).  REBASE is updated daily and is constantly expanding.",
       "homepage": "http://rebase.neb.com/rebase/rebase.html",
       "name": "REBASE",
-      "prefix": "r3d100012171"
+      "prefix": "r3d100012171",
+      "synonyms": [
+        "The Restriction Enzyme Database"
+      ],
+      "xrefs": {
+        "nif": "0000-03391",
+        "scr": "007886"
+      }
     },
     "uniprot": {
       "category": "Protein family/group databases",
@@ -57560,7 +58241,13 @@
       "description": "Rhea is a freely available and comprehensive resource of expert-curated biochemical reactions. It has been designed to provide a non-redundant set of chemical transformations for applications such as the functional annotation of enzymes, pathway inference and metabolic network reconstruction. There are three types of reaction participants (reactants and products): Small molecules,  Rhea polymers, Generic compounds.\nAll three types of reaction participants are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both mass and charge balance of the reactions. We have populated the database with the reactions found in the enzyme classification (i.e. in the IntEnz and ENZYME databases), extending it with additional known reactions of biological interest. While the main focus of Rhea is enzyme-catalysed reactions, other biochemical reactions (including those that are often termed \"spontaneous\") also are included.",
       "homepage": "https://www.rhea-db.org/",
       "name": "Rhea",
-      "prefix": "r3d100010891"
+      "prefix": "r3d100010891",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.pn1sr5",
+        "miriam": "00000082",
+        "nlx": "70986",
+        "omics": "06093"
+      }
     },
     "synonyms": [
       "RHEA"
@@ -58797,7 +59484,16 @@
       "description": "The SABIO-RK is a web-based application based on the SABIO relational database that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. It aims to support modellers in the setting-up of models of biochemical networks, but it is also useful for experimentalists or researchers with interest in biochemical reactions and their kinetics. All the data are manually curated and annotated by biological experts, supported by automated consistency checks.",
       "homepage": "http://sabiork.h-its.org/",
       "name": "SABIO-RK",
-      "prefix": "r3d100011052"
+      "prefix": "r3d100011052",
+      "synonyms": [
+        "Biochemical reation kinetics database",
+        "System for the Analysis of Biochemical Pathways - Reaction Kinetics"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.cwx04e",
+        "nif": "0000-20912",
+        "scr": "002122"
+      }
     },
     "synonyms": [
       "SABIO-RK"
@@ -58951,7 +59647,13 @@
       "description": "Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.\nSASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.",
       "homepage": "https://www.sasbdb.org/",
       "name": "SASBDB",
-      "prefix": "r3d100012273"
+      "prefix": "r3d100012273",
+      "synonyms": [
+        "Small Angle Scattering Biological Data Bank"
+      ],
+      "xrefs": {
+        "omics": "10449"
+      }
     },
     "uniprot": {
       "category": "3D structure databases",
@@ -61372,7 +62074,17 @@
       "description": "SoyBase is a professionally curated repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. SoyBase includes annotated \"Williams 82\" genomic sequence and associated data mining tools. The repository maintains controlled vocabularies for soybean growth, development, and traits that are linked to more general plant ontologies.",
       "homepage": "https://soybase.org/",
       "name": "SoyBase",
-      "prefix": "r3d100010846"
+      "prefix": "r3d100010846",
+      "synonyms": [
+        "SoyBase and the Soybean Breeder's Toolbox"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.z4agsr",
+        "miriam": "00000291",
+        "nif": "0000-03483",
+        "omics": "02778",
+        "scr": "005096"
+      }
     }
   },
   "span": {
@@ -61976,7 +62688,15 @@
       "description": "STOREDB is a platform for the archiving and sharing of primary data and outputs of all kinds, including epidemiological and experimental data, from research on the effects of radiation. It also provides a directory of bioresources and databases containing information and materials that investigators are willing to share. STORE supports the creation of a radiation research commons.",
       "homepage": "https://www.storedb.org/store_v3/",
       "name": "STOREDB",
-      "prefix": "r3d100011049"
+      "prefix": "r3d100011049",
+      "synonyms": [
+        "STORE",
+        "Sustaining access to Tissues and data frOm Radiobiological Experiments"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.6h8d2r",
+        "miriam": "00000577"
+      }
     },
     "uri_format": "https://www.storedb.org/?$1"
   },
@@ -62122,7 +62842,17 @@
       "description": "STRING is a database of known and predicted protein interactions.\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:\n- Genomic Context\n- High-throughput Experiments\n- (Conserved) Coexpression\n- Previous Knowledge\nSTRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.",
       "homepage": "https://string-db.org/",
       "name": "STRING",
-      "prefix": "r3d100010604"
+      "prefix": "r3d100010604",
+      "synonyms": [
+        "Known and Predicted Protein-Protein Interactions"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.9b7wvk",
+        "miriam": "00000265",
+        "nif": "0000-03503",
+        "omics": "29032",
+        "scr": "005223"
+      }
     },
     "uniprot": {
       "category": "Protein-protein interaction databases",
@@ -62569,7 +63299,16 @@
       "description": "SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.",
       "homepage": "http://www.swisslipids.org/#/",
       "name": "SwissLipids",
-      "prefix": "r3d100012603"
+      "prefix": "r3d100012603",
+      "synonyms": [
+        "A knowledge resource for lipids and their biology",
+        "Swiss+Lipids"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.pxr7x2",
+        "miriam": "00100727",
+        "omics": "08652"
+      }
     },
     "synonyms": [
       "slm",
@@ -62915,7 +63654,16 @@
       "description": "The Toxin and Toxin Target Database is a unique bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. The focus of the T3DB is on providing mechanisms of toxicity and target proteins for each toxin. This dual nature of the T3DB, in which toxin and toxin target records are interactively linked in both directions, makes it unique from existing databases.",
       "homepage": "http://www.t3db.ca/",
       "name": "T3DB",
-      "prefix": "r3d100012189"
+      "prefix": "r3d100012189",
+      "synonyms": [
+        "Toxic Exposome Database",
+        "Toxin and Toxin Target Database"
+      ],
+      "xrefs": {
+        "nif": "0000-22933",
+        "omics": "01592",
+        "scr": "002672"
+      }
     }
   },
   "tads": {
@@ -64160,7 +64908,16 @@
       "description": "TopFIND is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alternative splicing and alternative translation initiation or post-translational protein processing by proteases that cleave proteases as part of protein maturation or as a regulatory modification. Accordingly, protein termini evidence in TopFIND is inferred from other databases such as ENSEMBL transcripts, TISdb for alternative translation initiation, MEROPS for protein cleavage by proteases, and UniProt for canonical and protein isoform start sites.",
       "homepage": "http://clipserve.clip.ubc.ca/topfind/",
       "name": "TopFIND",
-      "prefix": "r3d100012721"
+      "prefix": "r3d100012721",
+      "synonyms": [
+        "Termini oriented protein Function Inferred Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.rkpmhn",
+        "nlx": "151607",
+        "omics": "10578",
+        "scr": "008918"
+      }
     }
   },
   "toxoplasma": {
@@ -64360,7 +65117,15 @@
       "description": "<<< !!!The website use an authentication. Repository isn't accessible!!! >>> TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the authors, publication editors, or reviewers using a special access code.",
       "homepage": "https://www.treebase.org",
       "name": "TreeBASE",
-      "prefix": "r3d100010170"
+      "prefix": "r3d100010170",
+      "synonyms": [
+        "a database of phylogenetic knowledge"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.zcn4w4",
+        "nif": "0000-03587",
+        "scr": "005688"
+      }
     }
   },
   "treefam": {
@@ -64471,7 +65236,15 @@
       "description": "TrichDB integrated genomic resources for the eukaryotic protist pathogens Trichomonas vaginalis.",
       "homepage": "http://trichdb.org/trichdb/",
       "name": "TrichDB",
-      "prefix": "r3d100012461"
+      "prefix": "r3d100012461",
+      "synonyms": [
+        "Trichomonas vaginalis Sequence Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.pv0ezt",
+        "miriam": "00100199",
+        "omics": "03162"
+      }
     }
   },
   "tritrypdb": {
@@ -64533,7 +65306,17 @@
       "description": "TriTrypDB is an integrated genomic and functional genomic database for pathogens of the family Trypanosomatidae, including organisms in both Leishmania and Trypanosoma genera. TriTrypDB and its continued development are possible through the collaborative efforts between EuPathDB, GeneDB and colleagues at the Seattle Biomedical Research Institute (SBRI).",
       "homepage": "https://tritrypdb.org/tritrypdb/app",
       "name": "TriTrypDB",
-      "prefix": "r3d100011479"
+      "prefix": "r3d100011479",
+      "synonyms": [
+        "kinetoplastid genomics resource"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.fs1z27",
+        "miriam": "00000155",
+        "nlx": "152064",
+        "omics": "03144",
+        "scr": "007043"
+      }
     }
   },
   "ttd.drug": {
@@ -65400,7 +66183,11 @@
       "description": "UniGene collects entries of transcript sequences from transcription loci from genes or expressed pseudogenes. Entries also contain information on the protein similarities, gene expressions, cDNA clone reagents, and genomic locations.",
       "homepage": "https://www.ncbi.nlm.nih.gov/unigene",
       "name": "UniGene",
-      "prefix": "r3d100010774"
+      "prefix": "r3d100010774",
+      "xrefs": {
+        "nlx": "41571",
+        "scr": "004405"
+      }
     }
   },
   "unii": {
@@ -65592,7 +66379,15 @@
       "description": "The UniProt Archive (UniParc) is a comprehensive and non-redundant database that contains most of the publicly available protein sequences in the world.",
       "homepage": "https://www.uniprot.org/help/uniparc",
       "name": "UniParc",
-      "prefix": "r3d100011519"
+      "prefix": "r3d100011519",
+      "synonyms": [
+        "UniProt Archive"
+      ],
+      "xrefs": {
+        "nlx": "76940",
+        "omics": "03880",
+        "scr": "004769"
+      }
     }
   },
   "unipathway.compound": {
@@ -65811,7 +66606,17 @@
       "description": "The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.",
       "homepage": "https://www.uniprot.org/uniprot/",
       "name": "UniProtKB",
-      "prefix": "r3d100011521"
+      "prefix": "r3d100011521",
+      "synonyms": [
+        "UniProtKnowledgebase",
+        "Universal Protein Knowledgebase"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.s1ne3g",
+        "nlx": "53981",
+        "omics": "03878",
+        "scr": "004426"
+      }
     },
     "synonyms": [
       "SwissProt",
@@ -66155,7 +66960,15 @@
       "description": "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.",
       "homepage": "https://www.uniprot.org/help/uniref",
       "name": "UniRef",
-      "prefix": "r3d100011518"
+      "prefix": "r3d100011518",
+      "synonyms": [
+        "UniProt Reference Clusters"
+      ],
+      "xrefs": {
+        "nlx": "66133",
+        "omics": "03879",
+        "scr": "010646"
+      }
     }
   },
   "unirule": {
@@ -66321,7 +67134,17 @@
       "description": "UNITE provides unified way how you delimit, identify, communicate and work with DNA based Species Hypotheses (SH).",
       "homepage": "https://unite.ut.ee/index.php",
       "name": "UNITE",
-      "prefix": "r3d100011316"
+      "prefix": "r3d100011316",
+      "synonyms": [
+        "Communication and identification of DNA based fungal species",
+        "Unified system for the DNA based fungal species linked to the classification"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.cnwx8c",
+        "nlx": "61947",
+        "omics": "23522",
+        "scr": "006518"
+      }
     }
   },
   "unpd": {
@@ -67148,7 +67971,16 @@
       "description": "VectorBase provides data on arthropod vectors of human pathogens. Sequence data, gene expression data, images, population data, and insecticide resistance data for arthropod vectors are available for download.  VectorBase also offers genome browser, gene expression and microarray repository,  and BLAST searches for all VectorBase genomes.  VectorBase Genomes include Aedes aegypti, Anopheles gambiae, Culex quinquefasciatus, Ixodes scapularis, Pediculus humanus, Rhodnius prolixus.  VectorBase is one the Bioinformatics Resource Centers (BRC) projects which is funded by National Institute of Allergy and Infectious Diseases (NAID).",
       "homepage": "https://www.vectorbase.org/",
       "name": "VectorBase",
-      "prefix": "r3d100010880"
+      "prefix": "r3d100010880",
+      "synonyms": [
+        "Bioinformatics Resource for Invertebrate Vectors of Human Pathogens"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.3etvdn",
+        "miriam": "00000232",
+        "nif": "0000-03624",
+        "omics": "03146"
+      }
     },
     "uri_format": "https://vectorbase.org/vectorbase/app/record/gene/$1"
   },
@@ -67194,7 +68026,16 @@
       "description": "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes. The final update of Vega, version 68, was released in February 2017 and is now archived at vega.archive.ensembl.org. We plan to maintain this resource until Feb 2020.",
       "homepage": "http://vega.archive.ensembl.org/index.html",
       "name": "Vega",
-      "prefix": "r3d100012575"
+      "prefix": "r3d100012575",
+      "synonyms": [
+        "Vertebrate Genome Annotation database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.mr293q",
+        "nif": "0000-03626",
+        "omics": "19068",
+        "scr": "007907"
+      }
     },
     "synonyms": [
       "VEGA"
@@ -67221,7 +68062,10 @@
       "description": "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain  the actual plot records,  vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and  all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. VegBank receives its data from the VegBank community of users.",
       "homepage": "http://vegbank.org/vegbank/index.jsp",
       "name": "VegBank",
-      "prefix": "r3d100010153"
+      "prefix": "r3d100010153",
+      "synonyms": [
+        "The Vegetation Plot Archive Project"
+      ]
     }
   },
   "vfb": {
@@ -67634,7 +68478,12 @@
       "description": "ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries.",
       "homepage": "https://viralzone.expasy.org/",
       "name": "ViralZone",
-      "prefix": "r3d100013314"
+      "prefix": "r3d100013314",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.tppk10",
+        "nlx": "144372",
+        "scr": "006563"
+      }
     }
   },
   "virsirna": {
@@ -68897,7 +69746,12 @@
       "description": "WikiPathways was established to facilitate the contribution and maintenance of pathway information by the biology community. WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. WikiPathways thus presents a new model for pathway databases that enhances and complements ongoing efforts, such as KEGG, Reactome and Pathway Commons. Building on the same MediaWiki software that powers Wikipedia, we added a custom graphical pathway editing tool and integrated databases covering major gene, protein, and small-molecule systems. The familiar web-based format of WikiPathways greatly reduces the barrier to participate in pathway curation. More importantly, the open, public approach of WikiPathways allows for broader participation by the entire community, ranging from students to senior experts in each field. This approach also shifts the bulk of peer review, editorial curation, and maintenance to the community.",
       "homepage": "http://wikipathways.org",
       "name": "WikiPathways",
-      "prefix": "r3d100013316"
+      "prefix": "r3d100013316",
+      "xrefs": {
+        "fairsharing": "FAIRsharing.1x53qk",
+        "nif": "0000-20925",
+        "scr": "002134"
+      }
     },
     "wikidata": {
       "database": "Q7999828",
@@ -69147,7 +70001,16 @@
       "description": "Launched in 2000, WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and some related nematodes. In addition to their curation work, all sites have ongoing programs in bioinformatics research to develop the next generations of WormBase structure, content and accessibility",
       "homepage": "https://www.wormbase.org/",
       "name": "WormBase",
-      "prefix": "r3d100010424"
+      "prefix": "r3d100010424",
+      "synonyms": [
+        "facilitating insights into nematode biology"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.zx1td8",
+        "nif": "0000-00053",
+        "omics": "01664",
+        "scr": "003098"
+      }
     },
     "synonyms": [
       "WB_REF",
@@ -69623,7 +70486,16 @@
       "description": "Xenbase's mission is to provide the international research community with a comprehensive, integrated and easy to use web based resource that gives access the diverse and rich genomic, expression and functional data available from Xenopus research. Xenbase also provides a critical data sharing infrastructure for many other NIH-funded projects, and is a focal point for the Xenopus community. In addition to our primary goal of supporting Xenopus researchers, Xenbase enhances the availability and visibility of Xenopus data to the broader biomedical research community.",
       "homepage": "https://www.xenbase.org/entry/",
       "name": "Xenbase",
-      "prefix": "r3d100011331"
+      "prefix": "r3d100011331",
+      "synonyms": [
+        "Xenopus Genomics Database"
+      ],
+      "xrefs": {
+        "fairsharing": "FAIRsharing.jrv6wj",
+        "miriam": "00000186",
+        "nif": "0000-01286",
+        "scr": "003280"
+      }
     },
     "synonyms": [
       "Xenbase"
@@ -70278,7 +71150,14 @@
       "description": "ZENODO builds and operates a simple and innovative service that enables researchers, scientists, EU projects and institutions to share and showcase multidisciplinary research results (data and publications) that are not part of the existing institutional or subject-based repositories of the research communities.\nZENODO enables researchers, scientists, EU projects and institutions to:\neasily share the long tail of small research results in a wide variety of formats including text, spreadsheets, audio, video, and images across all fields of science.\ndisplay their research results and get credited by making the research results citable and integrate them into existing reporting lines to funding agencies like the European Commission.\neasily access and reuse shared research results.",
       "homepage": "https://zenodo.org/",
       "name": "Zenodo",
-      "prefix": "r3d100010468"
+      "prefix": "r3d100010468",
+      "synonyms": [
+        "Research. Shared"
+      ],
+      "xrefs": {
+        "nlx": "158614",
+        "scr": "004129"
+      }
     },
     "reviewer": {
       "email": "cthoyt@gmail.com",
@@ -70633,7 +71512,11 @@
       "description": "The ZINC Database contains commercially available compounds for structure based virtual screening. It currently has about 21 million compounds that can simply be purchased. It is provided in ready-to-dock, 3D formats with molecules represented in biologically relevant forms. It is available in subsets for general screening as well as target-, chemotype- and vendor-focused subsets. ZINC is free for everyone to use and download at the website zinc.docking.org.",
       "homepage": "http://zinc15.docking.org/",
       "name": "ZINC",
-      "prefix": "r3d100010372"
+      "prefix": "r3d100010372",
+      "xrefs": {
+        "nif": "0000-31930",
+        "scr": "008596"
+      }
     },
     "wikidata": {
       "prefix": "P2084"
diff --git a/src/bioregistry/data/external/agroportal/raw.json b/src/bioregistry/data/external/agroportal/raw.json
index 4203734c0..499c74e1e 100644
--- a/src/bioregistry/data/external/agroportal/raw.json
+++ b/src/bioregistry/data/external/agroportal/raw.json
@@ -2453,7 +2453,32 @@
   },
   {
     "@context": {
-      "@vocab": "http://data.bioontology.org/metadata/"
+      "@vocab": "http://data.bioontology.org/metadata/",
+      "acronym": "http://omv.ontoware.org/2005/05/ontology#acronym",
+      "administeredBy": {
+        "@id": "http://data.bioontology.org/metadata/User",
+        "@type": "@id"
+      },
+      "flat": "http://data.bioontology.org/metadata/flat",
+      "group": {
+        "@id": "http://data.bioontology.org/metadata/Group",
+        "@type": "@id"
+      },
+      "hasDomain": {
+        "@id": "http://data.bioontology.org/metadata/Category",
+        "@type": "@id"
+      },
+      "name": "http://omv.ontoware.org/2005/05/ontology#name",
+      "ontologyType": {
+        "@id": "http://data.bioontology.org/metadata/OntologyType",
+        "@type": "@id"
+      },
+      "summaryOnly": "http://data.bioontology.org/metadata/summaryOnly",
+      "viewOf": {
+        "@id": "http://data.bioontology.org/metadata/Ontology",
+        "@type": "@id"
+      },
+      "viewingRestriction": "http://data.bioontology.org/metadata/viewingRestriction"
     },
     "@id": "http://data.agroportal.lirmm.fr/ontologies/PR",
     "@type": "http://data.bioontology.org/metadata/Ontology",
diff --git a/src/bioregistry/data/external/re3data/curation.tsv b/src/bioregistry/data/external/re3data/curation.tsv
index 419e36373..15da891b2 100644
--- a/src/bioregistry/data/external/re3data/curation.tsv
+++ b/src/bioregistry/data/external/re3data/curation.tsv
@@ -16,7 +16,7 @@ r3d100000011	The CEDA Archive	http://archive.ceda.ac.uk/	The Natural Environment
 We aim to support environmental science, further environmental data archival practices, and develop and deploy new technologies to enhance access to data. Additionally we provide services to aid large scale data analysis.
 r3d100000012	Biological and Chemical Oceanography Data Management Office	https://www.bco-dmo.org/	The Biological and Chemical Oceanography Data Management Office (BCO-DMO) is a publicly accessible earth science data repository created to curate, publicly serve (publish), and archive digital data and information from biological, chemical and biogeochemical research conducted in coastal, marine, great lakes and laboratory environments. The BCO-DMO repository works closely with investigators funded through the NSF OCE Division’s Biological and Chemical Sections and the Division of Polar Programs Antarctic Organisms & Ecosystems. The office provides services that span the full data life cycle, from data management planning support and DOI creation, to archive with appropriate national facilities.
 r3d100000013	Blue Obelisk Data Repository	https://sourceforge.net/projects/blueobelisk/	The Blue Obelisk Data Repository lists many important chemoinformatics data such as element and isotope properties, atomic radii, etc. including references to original literature. Developers can use this repository to make their software interoperable.
-r3d100000015	California Water CyberInfrastructure	None	The repository is no longer available. >>>!!!<<< 2021-01-25: no more access to California Water CyberInfrastructure >>>!!!<<<
+r3d100000015	California Water CyberInfrastructure		The repository is no longer available. >>>!!!<<< 2021-01-25: no more access to California Water CyberInfrastructure >>>!!!<<<
 r3d100000016	Canadian Astronomy Data Centre	http://www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/en/	The Canadian Astronomy Data Centre (CADC) was established in 1986 by the National Research Council of Canada (NRC), through a grant provided by the Canadian Space Agency (CSA). Over the past 30 years the CADC has evolved from an archiving centre---hosting data from Hubble Space Telescope, Canada-France-Hawaii Telescope, the Gemini observatories, and the James Clerk Maxwell Telescope---into a Science Platform for data-intensive astronomy. The CADC, in partnership with Shared Services Canada, Compute Canada, CANARIE and the university community (funded through the Canadian Foundation for Innovation), offers cloud computing, user-managed storage, group management, and data publication services, in addition to its ongoing mission to provide permanent storage for major data collections.
 
 Located at NRC Herzberg Astronomy and Astrophysics Research Centre in Victoria, BC, the CADC staff consists of professional astronomers, software developers, and operations staff who work with the community to develop and deliver leading-edge services to advance Canadian research. The CADC plays a leading role in international efforts to improve the scientific/technical landscape that supports data intensive science. This includes leadership roles in the International Virtual Observatory Alliance and participation in organizations like the Research Data Alliance, CODATA, and the World Data Systems. CADC also contributes significantly to future Canadian projects like the Square Kilometre Array and TMT. 
@@ -231,7 +231,7 @@ We thrive on community collaboration to help us create the leading resource for
 IT professionals come to Sourceforge to develop, download, review, and publish open source software. Sourceforge is the largest, most trusted destination for Open Source Software discovery and development on the web.
 r3d100010168	Space Physics Data Facility	https://spdf.gsfc.nasa.gov/	The Space Physics Data Facility (SPDF) leads in the design and implementation of unique multi-mission and multi-disciplinary data services and software to strategically advance NASA's solar-terrestrial program, to extend our science understanding of the structure, physics and dynamics of the Heliosphere of our Sun and to support the science missions of NASA's Heliophysics Great Observatory.
 Major SPDF efforts include multi-mission data services such as Heliophysics Data Portal (formerly VSPO), CDAWeb and CDAWeb Inside IDL,and OMNIWeb Plus (including COHOWeb, ATMOWeb, HelioWeb and CGM) , science planning and orbit services such as SSCWeb, data tools such as the CDF software and tools, and a range of other science and technology research efforts. The staff supporting SPDF includes scientists and information technology experts.
-r3d100010169	SumsDB	None	<<!! checked 20.03.2017 SumsDB was offline; for more information and archive see http://brainvis.wustl.edu/sumsdb/ >>
+r3d100010169	SumsDB		<<!! checked 20.03.2017 SumsDB was offline; for more information and archive see http://brainvis.wustl.edu/sumsdb/ >>
              SumsDB (the Surface Management System DataBase) is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.
 r3d100010171	SDAC	https://umbra.nascom.nasa.gov/index.html/index.html	The Solar Data Analysis Center serves data from recent and current space-based solar-physics missions, funds and hosts much of the SolarSoft library, and leads the Virtual Solar Observatory (VSO) effort. SDAC is the active archive, providing network access to data from such missions as SOHO, Yohkoh, and TRACE.
 r3d100010172	World Data Center for Aerosols	https://www.gaw-wdca.org/	The World Data Centre for Aerosols (WDCA) is the data repository and archive for microphysical, optical, and chemical properties of atmospheric aerosol of the World Meteorological Organisation's (WMO) Global Atmosphere Watch (GAW) programme. The goal of the Global Atmosphere Watch (GAW) programme is to ensure long-term measurements in order to detect trends in global distributions of chemical constituents in air and the reasons for them. With respect to aerosols, the objective of GAW is to determine the spatio-temporal distribution of aerosol properties related to climate forcing and air quality on multi-decadal time scales and on regional, hemispheric and global spatial scales.
@@ -337,7 +337,7 @@ r3d100010238	Flora von Frankfurt am Main	http://www.flora-frankfurt.de/	Here you
 r3d100010239	Forestry Images	https://www.forestryimages.org/	Forestry Images provides an accessible and easy to use archive of high quality images related to forest health and silviculture
 r3d100010241	RES³T	https://www.hzdr.de/db/res3t.login	RES³T is a digitized version of a thermodynamic sorption database as required for the parametrization of Surface Complexation Models (SCM). It is mineral-specific and can therefore also be used for additive models of more complex solid phases such as rocks or soils. A user interface helps to access selected mineral and sorption data, to convert parameter units, to extract internally consistent data sets for sorption modeling. Data records comprise of mineral properties, specific surface area values, characteristics of surface binding sites and their protolysis, sorption ligand information, and surface complexation reactions
 r3d100010243	UCSC Genome Browser	https://genome.ucsc.edu/	It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels.
-r3d100010246	GEON	None	-----<<<<<   The repository is no longer available. This record is out-dated.     >>>>>-----    GEON is an open collaborative project that is developing cyberinfrastructure for integration of 3 and 4 dimensional earth science data. GEON will develop services for data integration and model integration, and associated model execution and visualization. Mid-Atlantic test bed will focus on tectonothermal, paleogeographic, and biotic history from the late-Proterozoicto mid-Paleozoic. Rockies test bed will focus on integration of data with dynamic models, to better understand deformation history. GEON will develop the most comprehensive regional datasets in test bed areas.
+r3d100010246	GEON		-----<<<<<   The repository is no longer available. This record is out-dated.     >>>>>-----    GEON is an open collaborative project that is developing cyberinfrastructure for integration of 3 and 4 dimensional earth science data. GEON will develop services for data integration and model integration, and associated model execution and visualization. Mid-Atlantic test bed will focus on tectonothermal, paleogeographic, and biotic history from the late-Proterozoicto mid-Paleozoic. Rockies test bed will focus on integration of data with dynamic models, to better understand deformation history. GEON will develop the most comprehensive regional datasets in test bed areas.
 r3d100010247	GSA Data Repository	https://gsapubs.figshare.com/	The GSA Data Repository is an open file in which authors of articles in our journals can place information that supplements and expands on their article. These supplements will not appear in print but may be obtained from GSA.
 r3d100010248	GermOnline	http://www.germonline.org/index.html	GermOnline 4.0 is a cross-species database gateway focusing on high-throughput expression data relevant for germline development, the meiotic cell cycle and mitosis in healthy versus malignant cells. The portal provides access to the Saccharomyces Genomics Viewer (SGV) which facilitates online interpretation of complex data from experiments with high-density oligonucleotide tiling microarrays that cover the entire yeast genome.
 r3d100010249	ALLBUS	https://www.gesis.org/en/allbus/allbus-home	The German General Social Survey (ALLBUS) collects up-to-date data on attitudes, behavior, and social structure in Germany. Every two years since 1980 a representative cross section of the population is surveyed using both constant and variable questions. The ALLBUS data become available to interested parties for research and teaching as soon as they are processed and documented.
@@ -456,7 +456,7 @@ r3d100010347	tDAR	https://www.tdar.org/	The Digital Archaeological Record (tDAR)
 r3d100010348	TESS	https://www.tessexperiments.org/	Time-sharing Experiments for the Social Sciences (TESS) offers researchers the opportunity to capture the internal validity of experiments while also realizing the benefits of working with a large, diverse population of research participants.
 r3d100010349	Association of Religion Data Archives	https://www.thearda.com/	The Association of Religion Data Archives (ARDA) strives to democratize access to the best data on religion. Founded as the American Religion Data Archive in 1997 and going online in 1998, the initial archive was targeted at researchers interested in American religion. The targeted audience and the data collection have both greatly expanded since 1998, now including American and international collections and developing features for educators, journalists, religious congregations, and researchers. Data included in the ARDA are submitted by the foremost religion scholars and research centers in the world.
 r3d100010351	Tree of Life Web Project	http://www.tolweb.org/tree/phylogeny.html	The Tree of Life Web Project is a collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Its goal is to contain a page with pictures, text, and other information for every species and for each group of organisms, living or extinct. Connections between Tree of Life web pages follow phylogenetic branching patterns between groups of organisms, so visitors can browse the hierarchy of life and learn about phylogeny and evolution as well as the characteristics of individual groups.
-r3d100010352	CRYSTMET	None	<<<<!! The database is no longer available from 1st July 2018!! CRYSTMET was previously included in the NCDS as part of CrystalWorks.  Unfortunately we are no longer able to license the CRYSTMET database for access through the NCDS. Therefore the database will no longer be accessible from 1st July 2018. >>>>    CRYSTMET contains chemical, crystallographic and bibliographic data together with associated comments regarding experimental details for each study. It is a database of critically evaluated crystallographic data for metals, including alloys, intermetallics and minerals.Using these data, a number of associated files are derived, a major one being a parallel file of calculated powder patterns. These derived data are included within the CRYSTMET product.
+r3d100010352	CRYSTMET		<<<<!! The database is no longer available from 1st July 2018!! CRYSTMET was previously included in the NCDS as part of CrystalWorks.  Unfortunately we are no longer able to license the CRYSTMET database for access through the NCDS. Therefore the database will no longer be accessible from 1st July 2018. >>>>    CRYSTMET contains chemical, crystallographic and bibliographic data together with associated comments regarding experimental details for each study. It is a database of critically evaluated crystallographic data for metals, including alloys, intermetallics and minerals.Using these data, a number of associated files are derived, a major one being a parallel file of calculated powder patterns. These derived data are included within the CRYSTMET product.
 r3d100010354	THREDDS Data Server	http://www.unidata.ucar.edu/software/thredds/current/tds/TDS.html	The THREDDS Data Server (TDS) is a web server that provides metadata and data access for scientific datasets, using OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access protocols. Unidata is a diverse community of over 250 institutions vested in the common goal of sharing data, and tools to access and visualize that data. For more than 25 years Unidata has been providing data, tools, and support to enhance earth-system education and research. In an era of increasing data complexity, accessibility, and multidisciplinary integration, Unidata provides a rich set of services and tools.
 r3d100010355	Unidata Internet Data Distribution	http://www.unidata.ucar.edu/projects/index.html#idd	The Unidata community of over 260 universities is building a system for disseminating near real-time earth observations via the Internet. Unlike other systems, which are based on data centers where the information can be accessed, the Unidata IDD is designed so a university can request that certain data sets be delivered to computers at their site as soon as they are available from the observing system. The IDD system also allows any site with access to specialized observations to inject the dataset into the IDD for delivery to other interested sites.
 r3d100010356	Unidata's RAMADDA	https://ramadda.unidata.ucar.edu/repository	Our mission is to provide the data services, tools, and cyberinfrastructure leadership that advance earth-system science, enhance educational opportunities, and broaden participation. Unidata's main RAMADDA server contains access to a variety of datasets including the full IDD feed, Case Studies and other project data. RAMADDA is a content management system for Earth Science data. More information is available here:  http://ramadda.org/
@@ -587,10 +587,10 @@ r3d100010469	Movebank Data Repository	https://www.datarepository.movebank.org/	T
 r3d100010472	Phaidra Universität Wien	https://phaidra.univie.ac.at/	Phaidra Universität Wien, is the innovative whole-university digital asset management system with long-term archiving functions, offers the possibility to archive valuable data university-wide with permanent security and systematic input, offering multilingual access using metadata (data about data), thus providing worldwide availability around the clock. As a constant data pool for administration, research and teaching, resources can be used flexibly, where continual citability allows the exact location and retrieval of prepared digital objects.
 r3d100010473	myExperiment	https://www.myexperiment.org/home	myExperiment is a collaborative environment where scientists can safely publish their workflows and in silico experiments, share them with groups and find those of others. Workflows, other digital objects and bundles (called Packs) can now be swapped, sorted and searched like photos and videos on the Web. Unlike Facebook or MySpace, myExperiment fully understands the needs of the researcher and makes it really easy for the next generation of scientists to contribute to a pool of scientific methods, build communities and form relationships — reducing time-to-experiment, sharing expertise and avoiding reinvention. myExperiment is now the largest public repository of scientific workflows.
 r3d100010474	International Food Policy Research Institute Dataverse	https://dataverse.harvard.edu/dataverse/IFPRI	The International Food Policy Research Institute (IFPRI) seeks sustainable solutions for ending hunger and poverty.  In collaboration with institutions throughout the world, IFPRI is often involved in the collection of primary data and the compilation and processing of secondary data. The resulting datasets provide a wealth of information at the local (household and community), national, and global levels. IFPRI freely distributes as many of these datasets as possible and encourages their use in research and policy analysis. IFPRI Dataverse contains following dataverses: Agricultural Science and Knowledge Indicators - ASTI, HarvestChoice, Statistics on Public Expenditures for Economic Development - SPEED, International Model for Policy Analysis of Agricultural Commodities and Trade - IMPACT, Africa RISING Dataverse and Food Security Portal Dataverse.
-r3d100010475	DataFed	None	>>>>!!!!<<<< As of 2017-05-17 the data catalog is no longer available >>>>!!!!<<<< DataFed is a web services-based software that non-intrusively mediates between autonomous, distributed data providers and users. The main goals of DataFed are: Aid air quality management and science by effective use of relevant data - Facilitate the access and flow of atmospheric data from provider to users - Support the development of user-driven data processing value chains. DataFed Catalog links searchable Datafed applications worldwide.
+r3d100010475	DataFed		>>>>!!!!<<<< As of 2017-05-17 the data catalog is no longer available >>>>!!!!<<<< DataFed is a web services-based software that non-intrusively mediates between autonomous, distributed data providers and users. The main goals of DataFed are: Aid air quality management and science by effective use of relevant data - Facilitate the access and flow of atmospheric data from provider to users - Support the development of user-driven data processing value chains. DataFed Catalog links searchable Datafed applications worldwide.
 r3d100010477	ANU Data Commons	https://datacommons.anu.edu.au/DataCommons/	The Australian National University undertake work to collect and publish metadata about research data held by ANU, and in the case of four discipline areas, Earth Sciences, Astronomy, Phenomics and Digital Humanities to develop pipelines and tools to enable the publication of research data using a common and repeatable approach. Aims and outcomes: To identify and describe research data held at ANU, to develop a consistent approach to the publication of metadata on the University's data holdings: Identification and curation of significant orphan data sets that might otherwise be lost or inadvertently destroyed, to develop a culture of data data sharing and data re-use.
 r3d100010478	GigaDB	http://gigadb.org/	GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.
-r3d100010479	DataBox	None	!!! the repository is no longer available, archived site: http://archive.is/6UyFH/image!!! DataBox is a digital archive for scientific primary data for use by researchers at The University of Copenhagen. DataBox is available to researchers, departments and institutes at the University and research groups with an affiliation to the University of Copenhagen.
+r3d100010479	DataBox		!!! the repository is no longer available, archived site: http://archive.is/6UyFH/image!!! DataBox is a digital archive for scientific primary data for use by researchers at The University of Copenhagen. DataBox is available to researchers, departments and institutes at the University and research groups with an affiliation to the University of Copenhagen.
 DataBox serves as an additional backup system, which archives data in a structured form for both short and medium term preservation. It can also serve as a way of sharing data. Each researcher/group can create his/her own space in DataBox and can store and process the data, and if he/she chooses to share his/her data. Version history of files is retained by the system.
 r3d100010480	COSYNA Data web portal	https://codm.hzg.de/codm/	The COSYNA observatory measures key physical, sedimentary, geochemical and biological parameters at high temporal resolution in the water column and at the sediment and atmospheric boundaries.
 COSYNA delivers spatial representation through a set of fixed and moving platforms, like tidal flats poles, FerryBoxes, gliders, ship surveys, towed devices, remote sensing, etc..
@@ -698,7 +698,7 @@ r3d100010551	Nucleic Acid Database	http://ndbserver.rutgers.edu/	The NDB is a re
 r3d100010552	Mouse Phenome Database	http://phenome.jax.org/	The Mouse Phenome Database (MPD; phenome.jax.org) has characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies.
 r3d100010553	REFOLDdb	http://p4d-info.nig.ac.jp/refolddatabase/	REFOLD has merged to REFOLDdb. 
 REFOLDdb is a unique database for the life sciences research community, providing annotated information for designing new refolding protocols and customizing existing methodologies. We envisage that this resource will find wide utility across broad disciplines that rely on the production of pure, active, recombinant proteins. Furthermore, the database also provides a useful overview of the recent trends and statistics in refolding technology development.We based our resource on the existing REFOLD database, which has not been updated since 2009. We redesigned the data format to be more concise, allowing consistent representations among data entries compared with the original REFOLD database. The remodeled data architecture enhances the search efficiency and improves the sustainability of the database. After an exhaustive literature search we added experimental refolding protocols from reports published 2009 to early 2017. In addition to this new data, we fully converted and integrated existing REFOLD data into our new resource.
-r3d100010554	South African Data Archive	None	>>>!!!<<< 2020-08-28; the repository is no longer available >>>!!!<<< The South African Data Archive promotes and facilitates the sharing of research data and related documentation of computerised raw quantitative data of large scale regional, national and international research projects mainly in the humanities and social sciences. It makes these datasets available to the research community for further analysis, comparative studies, longitudinal studies, teaching and decision-making purposes.
+r3d100010554	South African Data Archive		>>>!!!<<< 2020-08-28; the repository is no longer available >>>!!!<<< The South African Data Archive promotes and facilitates the sharing of research data and related documentation of computerised raw quantitative data of large scale regional, national and international research projects mainly in the humanities and social sciences. It makes these datasets available to the research community for further analysis, comparative studies, longitudinal studies, teaching and decision-making purposes.
 r3d100010555	Stanford Microarray Database	http://smd.princeton.edu/	>>>!!!<<< SMD has been retired.
 After approximately fifteen years of microarray-centric research service, the Stanford Microarray Database has been retired. We apologize for any inconvenience; please read below for possible resolutions to your queries.
 If you are looking for any raw data that was directly linked to SMD from a manuscript, please search one of the public repositories.
@@ -764,7 +764,7 @@ r3d100010599	DSpace@MIT	http://dspace.mit.edu/	DSpace@MIT is a service of the MI
 DSpace@MIT content includes conference papers, images, peer-reviewed scholarly articles, preprints, technical reports, theses, working papers, research datasets and more.  This collection of more than 60,000 high-quality works is recognized as among the world's premier scholarly repositories and receives, on average, more than 1 million downloads per month.
 r3d100010600	Macaulay Library	https://www.macaulaylibrary.org/	The Macaulay Library is the world's largest and oldest scientific archive of biodiversity audio and video recordings. The library collects and preserves recordings of each species' behavior and natural history, to facilitate the ability of others to collect and preserve such recordings, and to actively promote the use of these recordings for diverse purposes spanning scientific research, education, conservation, and the arts.  All archived analog recordings in the collection, going back to 1929.
 r3d100010601	WDC Sunspot Index and Long-term Solar Observations	http://sidc.be/silso/	SILSO is the World Data Center for the production, preservation and dissemination of the international sunspot number.
-r3d100010602	Space Physics Interactive Data Resource	None	>>>!!!<<<The repository is offline >>>!!!<<<   The Space Physics Interactive Data Resource from NOAA's National Geophysical Data Center allows solar terrestrial physics customers to intelligently access and manage historical space physics data for integration with environment models and space weather forecasts.
+r3d100010602	Space Physics Interactive Data Resource		>>>!!!<<<The repository is offline >>>!!!<<<   The Space Physics Interactive Data Resource from NOAA's National Geophysical Data Center allows solar terrestrial physics customers to intelligently access and manage historical space physics data for integration with environment models and space weather forecasts.
 r3d100010603	Spitzer Heritage Archive	http://ssc.spitzer.caltech.edu/	Spitzer is the final mission in NASA's Great Observatories Program - a family of four orbiting observatories, each observing the Universe in a different kind of light (visible, gamma rays, X-rays, and infrared). Spitzer is also a part of NASA's Astronomical Search for Origins Program, designed to provide information which will help us understand our cosmic roots, and how galaxies, stars and planets develop and form.
 r3d100010605	SWISS-MODEL Repository	https://swissmodel.expasy.org/repository/	The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.
 r3d100010606	Tropical Ecology Assessment and Monitoring Network	http://www.teamnetwork.org/	TEAM is devoted to monitoring long-term trends in biodiversity, land cover change, climate and ecosystem services in tropical forests. Tropical forests received first billing because of their overwhelming significance to the global biosphere (e.g., their disproportionately large role in global carbon and energy cycles) and because of the extraordinary threats they face. About 50 percent of the species described on Earth, and an even larger proportion of species not yet described, occur in tropical forests. TEAM aims to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.
@@ -772,7 +772,7 @@ r3d100010607	United States Health Information Knowledgebase	https://ushik.ahrq.g
 r3d100010608	World Data Center for Geomagnetism, Kyoto	http://wdc.kugi.kyoto-u.ac.jp/	The task of WDC geomagnetism is to collect geomagnetic data from all over the globe and distribute those data to researchers and data users, as a World Data Center for Geomagnetism.
 r3d100010609	World Data Center for Geoinformatics and Sustainable Development	http://wdc.org.ua/	Among the basic tasks of WDC-Ukraine there is collection, handling and storage of science data and giving access to it for usage both in science research and study process. That include contemporary tutoring technologies and resources of e-libraries and archives; remote access to own information resources for the wide circle of scientists from the universities and science institutions of Ukraine
 r3d100010610	ALEXA	http://www.alexaplatform.org/	ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by the use of alternative transcription initiation, splicing and polyadenylation sites. We use the term 'ALEXA' to describe a collection of novel genomic methods for 'alternative expression' analysis. 'Alternative expression' refers to the identification and quantification of alternative mRNA transcripts produced by alternative transcript initiation, alternative splicing and alternative polyadenylation. This website provides supplementary materials, source code and other downloads for recent publications describing our studies of alternative expression (AE). Most recently we have developed a method, 'ALEXA-Seq' and associated resources for alternative expression analysis by massively parallel RNA sequencing.
-r3d100010611	C. Elegans Gene Expression	None	!!! <<< Genome data generated by BC Genome Sciences Centre is no longer available through this site as it is regularly deposited into controlled data repositories such as the European Genome Phenome Archive (EGA); ICGC (International Cancer Genome Consortium) and the Genome Data Commons (GDC) <<< !!! Using serial analysis of gene expression (SAGE) and microarrays, we are examining total mRNA populations in all developmental stages, both in whole worms and in specific cells and tissues. In addition, we are building promoter::GFP constructs to monitor gene expression in transgenic worms, focusing on C. elegans genes that have human orthologues. Also available are web-based PCR primer design tools, and access to information about our C. elegans Fosmid library.
+r3d100010611	C. Elegans Gene Expression		!!! <<< Genome data generated by BC Genome Sciences Centre is no longer available through this site as it is regularly deposited into controlled data repositories such as the European Genome Phenome Archive (EGA); ICGC (International Cancer Genome Consortium) and the Genome Data Commons (GDC) <<< !!! Using serial analysis of gene expression (SAGE) and microarrays, we are examining total mRNA populations in all developmental stages, both in whole worms and in specific cells and tissues. In addition, we are building promoter::GFP constructs to monitor gene expression in transgenic worms, focusing on C. elegans genes that have human orthologues. Also available are web-based PCR primer design tools, and access to information about our C. elegans Fosmid library.
 r3d100010612	ChIP-Seq Transcription Factor Data	http://www.bcgsc.ca/data/chipseq/chip-seq-data	We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon-gamma (IFN-gamma)-stimulated and unstimulated human HeLa S3 cells, and compared the method's performance to ChIP-PCR and to ChIP-chip for four chromosomes.For both Chromatin- immunoprecipation Transcription Factors and Histone modifications. Sequence files and the associated probability files are also provided.
 r3d100010613	Physical mapping data at Canada's Michael Smith Genome Sciences Centre - Data	http://www.bcgsc.ca/data	FPC Mapping data files from species that have been fingerprinted at Canada's Michael Smith Genome Sciences Centre (BCGSC).
 r3d100010614	Follicular Lymphoma Genome Data at Canada's Michael Smith Genome Sciences Centre (BCGSC)	http://www.bcgsc.ca/data/hra-follicular-lymphoma	<<<!!!<<< Genome data generated by BC Genome Sciences Centre is no longer available through this site as it is regularly deposited into controlled data repositories such as the European Genome Phenome Archive (EGA); ICGC (International Cancer Genome Consortium) and the Genome Data Commons (GDC) >>>!!!>>>
@@ -890,7 +890,7 @@ The first working target, is the implementation of the TNG Long-Term Archive (LT
 − providing tools to support the life cycle of observing proposals.
 The second target of the proposal aims at ensuring harmonization with other projects related to archiving of data of astrophysical interest, with particular reference to projects involving the Italian astronomical community (LBT, VST, GSC-II, DPOSS, …), to the Italian Solar and Solar System Physics community (SOLAR, SOLRA, ARTHEMIS which form SOLARNET – a future node of EGSO) and to the national and international coordination efforts fostering the idea of a multiwavelength Virtual Astronomical Observatory, and the use of the archived data through the Italian Astronomical Grid.
 r3d100010683	HomoMINT	http://mint.bio.uniroma2.it/HomoMINT/Welcome.do	The repository is no longer available. >>>!!!<<<2019-02-19
-r3d100010684	domino	None	>>>!!!<<< The repository is no longer available. 2019-02-19
+r3d100010684	domino		>>>!!!<<< The repository is no longer available. 2019-02-19
 r3d100010685	virus mentha	https://virusmentha.uniroma2.it/	virus mentha archives evidence about viral interactions collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. virus mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions. Protein interaction databases archive protein-protein interaction (PPI) information from published articles. However, no database alone has sufficient literature coverage to offer a complete resource to investigate "the interactome".
 virus mentha's approach generates every week a consistent interactome (graph). Most importantly, the procedure assigns to each interaction a reliability score that takes into account all the supporting evidence. virus mentha offers direct access to viral families such as: Orthomyxoviridae, Orthoretrovirinae and Herpesviridae plus, it offers the unique possibility of searching by host organism. The website and the graphical application are designed to make the data stored in virus mentha accessible and analysable to all users.virus mentha superseeds VirusMINT. The Source databases are: MINT, DIP, IntAct, MatrixDB, BioGRID.
 r3d100010689	Smithsonian Tropical Research Institute Logo - Panama	http://ctfs.si.edu/PanamaAtlas/datasets/	Welcome to the digital flora of Panama. You may access the taxonomic list of lianas, common trees, shrubs and palms by species name, family, or by their common names in Panama. There are for each species: a botanical description, photos, scans, drawings, and a distribution map showing its presence or absence in a series of floristic inventories and plots established by the Center for Tropical Forest Science in the Panama Canal watershed. A map of its distribution in the countries of Panama and its neighbor Costa Rica includes data from the Global Biodiversity Information Facility (GBIF) network (https://www.gbif.org/). Some families include descriptions.
@@ -993,7 +993,7 @@ r3d100010764	Southern California Earthquake Center	https://www.scec.org/	SCEC's
 r3d100010765	American Mineralogist Crystal Structure Database	http://rruff.geo.arizona.edu/AMS/amcsd.php	AMCSD is an interface to a crystal structure database that includes every structure published in the American Mineralogist, The Canadian Mineralogist, European Journal of Mineralogy and Physics and Chemistry of Minerals, as well as selected datasets from other journals. The database is maintained under the care of the Mineralogical Society of America and the Mineralogical Association of Canada, and financed by the National Science Foundation. You may search by a mineral of your choice, or choose a mineral from a complete list to help aid your research.
 r3d100010766	RRUFF Project	https://rruff.info/	The RRUFF Project is creating a complete set of high quality spectral data from well characterized minerals and is developing the technology to share this information with the world. The collected data provides a standard for mineralogists, geoscientists, gemologists and the general public for the identification of minerals both on earth and for planetary exploration.Electron microprobe analysis is used to determine the chemistry of each mineral.
 r3d100010767	Reciprocal Net	http://www.reciprocalnet.org/	The Reciprocal Net is a distributed database used by research crystallographers to store information about molecular structures; much of the data is available to the general public. The Reciprocal Net project is still under development. Currently, there are 18 participating crystallography laboratories online. The project is funded by the National Science Foundation (NSF) and part of the National Science Digital Library. The contents of this collection will come principally from structures contributed by participating crystallography laboratories, thus providing a means for teachers, students, and the general public to connect better with current chemistry research. The Reciprocal Net's emphasis is on obtaining structures of general interest and usefulness to those several classes of digital library users.
-r3d100010768	American FactFinder	None	>>>!!!<<< American FactFinder has been decommissioned and is no longer available. Data are now available at: data.census.gov  >>>!!!<<< 
+r3d100010768	American FactFinder		>>>!!!<<< American FactFinder has been decommissioned and is no longer available. Data are now available at: data.census.gov  >>>!!!<<< 
 American FactFinder, maintained by the U.S. Census Bureau, is a source for United States population, housing, economic, and geographic data. The Census Bureau conducts nearly one hundred surveys and censuses every year. Note that by law, no one is permitted to reveal information from these censuses and surveys that could identify any person, household, or business.
 r3d100010769	Public Geodata Repository	https://www.osgeo.org/projects/geonetwork/	OSGeo's mission is to support the collaborative development of open source geospatial software, in part by providing resources for projects and promoting freely available geodata. The Public Geodata Repository is a distributed repository and registry of data sources free to access, reuse, and re-distribute.
 r3d100010770	Biomedical Informatics Research Network	https://neuroscienceblueprint.nih.gov/factSheet/birn.htm	>>>!!!<<< As stated 2017-05-16 The BIRN project was finished a few years ago. The web portal is no longer live.>>>!!!<<<  BIRN is a national initiative to advance biomedical research through data sharing and online collaboration. It supports multi-site, and/or multi-institutional, teams by enabling researchers to share significant quantities of data across geographic distance and/or incompatible computing systems.  BIRN offers a library of data-sharing software tools specific to biomedical research, best practice references, expert advice and other resources.
@@ -1100,7 +1100,7 @@ r3d100010873	National Agricultural Statistics Service	https://www.nass.usda.gov/
 r3d100010874	XNAT CENTRAL	https://central.xnat.org/	XNAT CENTRAL is a publicly accessible datasharing portal at Washinton University Medical School using XNAT software. XNAT provides neuroimaging data through a web interface and a customizable open source platform.  XNAT facilitates data uploads and downloads for data sharing, processing and organization.
 r3d100010875	ExPASy Bioinformatics Resource Portal	https://www.expasy.org/	Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources
 r3d100010876	U.S. Department of Labor, Bureau of Labor Statistics	https://www.bls.gov/data/	The U.S. Bureau of Labor Statistics collects, analyzes, and publishes reliable information on many aspects of the United States economy and society. They measure employment, compensation, worker safety, productivity, and price movements. This information is used by jobseekers, workers, business leaders, and others to assist them in making sound decisions at work and at home. Statistical data covers a wide range of topics about the labor market, economy and society in the U.S.; subject areas include: Inflation & Prices, Employment, Unemployment, Pay & Benefits, Spending & Time Use, Productivity, Workplace Injuries, International, and Regional Resources. Data is available in multiple formats including charts and tables as well as Bureau of Labor Statistics publications.
-r3d100010877	ROAR Isolate Database	None	The repository is no longer available. >>>!!!<<< 2019-03-29: no more access to ROAR Isolate Database >>>!!!<<<
+r3d100010877	ROAR Isolate Database		The repository is no longer available. >>>!!!<<< 2019-03-29: no more access to ROAR Isolate Database >>>!!!<<<
 r3d100010878	ComBase	https://www.combase.cc/index.php/en/	ComBase is a resource for quantitative and predictive food microbiology. ComBase includes a database of observed microbial responses to a variety of food-related environments and a collection of predictive models.
 r3d100010879	Gateway to Global Aging Data	https://g2aging.org/	The Gateway to Global Aging Data is a platform for population survey data on aging around the world.  This site offers a digital library of survey questions, a search engine for finding comparable questions across surveys, and identically defined variables for cross-country analysis. The Survey Meta Data Repository provides Health and Retirement Study metadata of family surveys. Survey Meta Data Repository primarily provides access to survey metadata so researchers can compare survey formats, types and identically defined variables.  Additional resources include tools for cross-country analysis, general statistics by country and year, survey question library, and tools for comparing questions across the surveys. Datasets are in Stata format; users must register and request datasets.
 r3d100010881	NCBI dbMHC	https://www.ncbi.nlm.nih.gov/gv/mhc/	>>>> !!! the repository is no longer available - Data previously on the site are now available at ftp://ftp.ncbi.nlm.nih.gov/pub/mhc/mhc/Final Archive.  !!!  <<< The dbMHC database provides an open, publicly accessible platform for DNA and clinical data related to the human Major Histocompatibility Complex (MHC). The dbMHC provides access to human leukocyte antigen (HLA) sequences, HLA allele and haplotype frequencies, and clinical datasets.
@@ -1112,7 +1112,7 @@ r3d100010886	Demographic and Health Surveys	https://dhsprogram.com/	MEASURE DHS
 r3d100010887	TalkBank	http://talkbank.org/	TalkBank provides transcripts, audio and video of communicative interactions for research in human and animal communication.
 r3d100010888	Digital Lunar Orbiter Photographic Atlas of the Moon	https://www.lpi.usra.edu/resources/lunar_orbiter/	The Lunar Orbiter Photographic Atlas of the Moon by Bowker and Hughes (NASA SP-206) is considered the definitive reference manual to the global photographic coverage of the Moon. The images contained within the atlas are excellent for studying lunar morphology because they were obtained at low to moderate Sun angles. The digital Lunar Orbiter Atlas of the Moon is a reproduction of the 675 plates contained in Bowker and Hughes. The digital archive, however, offers many improvements upon its original hardbound predecessor. Multiple search capabilities were added to the database to expedite locating images and features of interest. For accuracy and usability, surface feature information has been updated and improved. Lastly, to aid in feature identification, a companion image containing feature annotation has been included. The symbols on the annotated overlays, however, should only be used as locators and not for precise measurements. More detailed information about the digital archive process can be read in abstracts presented at the 30th and 31st Lunar and Planetary Science Conferences.
 r3d100010890	Protein Circular Dichroism Data Bank	https://pcddb.cryst.bbk.ac.uk/	The Protein Circular Dichroism Data Bank (PCDDB) provides and accepts a circular dichroism spectra data. The PCDDB and it's parent organization, the Institute of Structural and Molecular Biology (ISMB), investigate molecular structure using techniques such as biomolecular nuclear magnetic resonance, X-ray crystallography and computational structure prediction, as methods for protein production and biological characterization.
-r3d100010892	DMITRE Petroleum	None	>>>!!!<<<  the url is no longer responsive <<<!!!>>>   South Australia has considerable potential for petroleum and geothermal energy. The Energy Resources Division provides geoscientific and engineering information and data to support industry exploration and development.
+r3d100010892	DMITRE Petroleum		>>>!!!<<<  the url is no longer responsive <<<!!!>>>   South Australia has considerable potential for petroleum and geothermal energy. The Energy Resources Division provides geoscientific and engineering information and data to support industry exploration and development.
 r3d100010894	International Satellite Cloud Climatology Project	https://eosweb.larc.nasa.gov/project/isccp/isccp_table	The International Satellite Cloud Climatology Project (ISCCP) is a database of intended for researchers to share information about cloud radiative properties. The data sets focus on the effects of clouds on the climate, the radiation budget, and the long-term hydrologic cycle. Within the data sets the data entries are broken down into entries of specific characteristics based on temporal resolution, spatial resolution, or temporal coverage.
 r3d100010895	Journal of Cell Biology - JCB DataViewer	https://rupress.org/jcb/pages/history	>>>!!!<<<   Data originally published in the JCB DataViewer has been moved BioStudies. Please note that while the majority of data were moved, some authors opted to remove their data completely.    >>>!!!<<<   Migrated data can be found at https://www.ebi.ac.uk/biostudies/JCB/studies. Screen data are available in the Image Data Resource repository. http://idr.openmicroscopy.org/webclient/?experimenter=-1   >>>!!!<<<     The DataViewer was decommissioned in 2018 as the journal evolved to an all-encompassing archive policy towards original source data and as new data repositories that go beyond archiving data and allow investigators to make new connections between datasets, potentially driving discovery, emerged. JCB authors are encouraged to make available all datasets included in the manuscript from the date of online publication either in a publicly available database or as supplemental materials hosted on the journal website. We recommend that our authors store and share their data in appropriate publicly available databases based on data type and/or community standard. >>>!!!<<<
 r3d100010896	EVIA Digital Archive Project	http://eviada.webhost.iu.edu/Scripts/mainCat.cfm?mc=7	The EVIA Digital Archive Project is a repository of ethnographic video recordings and an infrastructure of tools and systems supporting scholars in the ethnographic disciplines. The project focuses on the fields of ethnomusicology, folklore, anthropology, and dance ethnology.
@@ -1185,7 +1185,7 @@ The Ocean Data Explorer  contains scientific and management information includin
 r3d100010963	National Science Foundation Polar Programs UV Monitoring Network	http://uv.biospherical.com/	The National Science Foundation (NSF) Ultraviolet (UV) Monitoring Network provides data on ozone depletion and the associated effects on terrestrial and marine systems.  Data are collected from 7 sites in Antarctica, Argentina, United States, and Greenland. The network is providing data to researchers studying the effects of ozone depletion on terrestrial and marine biological systems. Network data is also used for the validation of satellite observations and for the verification of models describing the transfer of radiation through the atmosphere.
 r3d100010964	Advanced Cooperative Arctic Data and Information Service	https://arcticdata.io/	>>>>!!!<<<<As of March 28, 2016, the 'NSF Arctic Data Center' will serve as the current repository for NSF-funded Arctic data. The ACADIS Gateway http://www.aoncadis.org is no longer accepting data submissions. All data and metadata in the ACADIS system have been transferred to the NSF Arctic Data Center system. There is no need for you to resubmit existing data. >>>>!!!<<<<
 ACADIS is a repository for Arctic research data to provide data archival, preservation and access for all projects funded by NSF's Arctic Science Program (ARC). Data include long-term observational timeseries, local, regional, and system-scale research from many diverse domains. The Advanced Cooperative Arctic Data and Information Service (ACADIS) program includes data management services.
-r3d100010965	Integrated Fertility Survey Series	None	>>>>>> !!! <<<<<<    This website ceased operation on Sept. 30, 2020, as the website is no longer funded   >>>>>  !!!!!   <<<<
+r3d100010965	Integrated Fertility Survey Series		>>>>>> !!! <<<<<<    This website ceased operation on Sept. 30, 2020, as the website is no longer funded   >>>>>  !!!!!   <<<<
 r3d100010966	Earth System Research Laboratory - Global Monitoring Division	https://www.esrl.noaa.gov/gmd/	Earth System Research Laboratory (ESRL) Global Monitoring Division (GMD) provides data relating to climate change forces and models, ozone depletion and rehabilitation, and baseline air quality.  Data are freely available so the public, policy makers, and scientists stay current with long-term atmospheric trends.
 r3d100010967	Indian National Centre for Ocean Information  Services	https://odis.incois.gov.in/	The Ocean Date and Information System provides information on physical, chemical, biological and geological parameters of ocean and coasts on spatial and temporal domains that is vital for both research and operational oceanography. In-situ and remote sensing data are included. The Ocean Information Bank is supported by the data received from Ocean Observing Systems in the Indian Ocean (both the in-situ platforms and satellites) as well as by a chain of Marine Data Centres. Ocean and coastal measurements are available.  Data products are accessible through various portals on the site and are largely available by data type (in situ or remote sensing) and then by parameter.
 r3d100010968	NASA Prognostics Data Repository	https://ti.arc.nasa.gov/tech/dash/groups/pcoe/prognostic-data-repository/	>>>!!!<<<  No more data will be available on this page. >>>!!!<<<  NASA's Prognostics Center of Excellence hosts the Prognostics Data Repository to provide data used in the development of prognostic algorithms, and time series of nominal to failed states.  Data are donated from universities, agencies, or companies on an ongoing process.
@@ -1195,8 +1195,8 @@ Indian Genetic Disease Database (IGDD) is an initiative of CSIR Indian Institute
 The Indian people represent one-sixth of the world population and consists of a ethnically, geographically, and genetically diverse population. In some communities the ratio of genetic disorder is relatively high due to consanguineous marriage practiced in the community. This database has been created to keep track of mutations in the causal genes for genetic diseases common in India and help the physicians, geneticists, and other professionals retrieve and use the information for the benefit of the public. The database includes scientific information about these genetic diseases and disabilities, but also statistical information about these diseases in today's society. Data is categorized by body part affected and then by title of the disease.
 r3d100010971	Marine Microbial Database of India	http://www.biosearch.in/microbes/	>>>!!!<<< This repository is no longer available >>>!!!<<< 
 Marine Microbial Database of India is an initiative of CSIR National Institute of Oceanography (NIO). It is supported by Council of Scientific and Industrial Research (CSIR) and managed by Biodiversity Informatics Group (BIG), Bioinformatics Centre of the NIO. It contains records about 1,814 marine microbes. Each record provides information on microbe’s location, habitat, importance (of the organism), threats (to the organism). The database also provides a Taxonomic Hierarchy and Scientific Name Index.
-r3d100010972	ACEpepDB: Peptide Database	None	>>>>!!<<<< As stated 2017-11-23 the database is not available anymore >>>>!!<<<< ACEpepDB is a database ran by the Central Food Technological Research Institute. It contains records of about 865 peptides. Each record provides information on the food source, preparation,  purification and any other additional information. Each record includes the reference(s). The database provides a search and browsing option for a more personalized research experience.
-r3d100010973	TBNet India	None	>>>>!!<<< As detected 2017-11-24  TBNet India is no longer accessible >>>>!!<<<< TBNet India is an initiative by the Department of Biotechnology, Govt of India with special focus on Indian contributions on research and various issues related to tuberculosis. Around 13 institutions across India are apart of this initiative. TB Net India focuses to gather clinical, epidemiological and molecular data and make it available to the biomedical community.
+r3d100010972	ACEpepDB: Peptide Database		>>>>!!<<<< As stated 2017-11-23 the database is not available anymore >>>>!!<<<< ACEpepDB is a database ran by the Central Food Technological Research Institute. It contains records of about 865 peptides. Each record provides information on the food source, preparation,  purification and any other additional information. Each record includes the reference(s). The database provides a search and browsing option for a more personalized research experience.
+r3d100010973	TBNet India		>>>>!!<<< As detected 2017-11-24  TBNet India is no longer accessible >>>>!!<<<< TBNet India is an initiative by the Department of Biotechnology, Govt of India with special focus on Indian contributions on research and various issues related to tuberculosis. Around 13 institutions across India are apart of this initiative. TB Net India focuses to gather clinical, epidemiological and molecular data and make it available to the biomedical community.
 r3d100010975	Yeast Resource Center	http://depts.washington.edu/yeastrc/	The Yeast Resource Center provides access to data about mass spectrometry, yeast two-hybrid arrays, deconvolution florescence microscopy, protein structure prediction and computational biology. These services are provided to further the goal of a complete understanding of the chemical interactions required for the maintenance and faithful reproduction of a living cell. The observation that the fundamental biological processes of yeast are conserved among all eukaryotes ensures that this knowledge will shape and advance our understanding of living systems.
 r3d100010976	ForestPlots.net	https://www.forestplots.net	ForestPlots.net is a web-accessible secure repository for forest plot inventories in South America, Africa and Asia. The database includes plot geographical information; location, taxonomic information and diameter measurements of trees inside each plot; and participants in plot establishment and re-measurement, including principal investigators, field assistants, students.
 r3d100010977	HIstome	http://www.actrec.gov.in/histome/index.php	HIstome: The Histone Infobase is a database of human histones, their post-translational modifications and modifying enzymes. HIstome is a combined effort of researchers from two institutions, Advanced Center for Treatment, Research and Education in Cancer (ACTREC), Navi Mumbai and Center of Excellence in Epigenetics, Indian Institute of Science Education and Research (IISER), Pune.
@@ -1248,7 +1248,7 @@ Data are served through a number of subsystems (information provided in reposito
 r3d100011015	Internet Archive	https://archive.org/	The Internet Archive includes texts, audio, moving images, software, and archived web pages.
 r3d100011016	National Geothermal Data System	http://geothermaldata.org/	The National Geothermal Data System (NGDS) is a distributed data system that provides access to information related to geothermal energy from a network of data providers, including academic researchers, private industry, and state and federal agencies.
 r3d100011017	Primate Life Histories database	https://plhdb.org/	This database contains individual-based life history data that have been collected from wild primate populations by nine working group participants over a minimum of 19 years.
-r3d100011018	NARSTO	None	>>>!!!<<<  the repository is offline >>>!!!<<< NARSTO is dedicated to improving management of air quality in North America.  Additionally, NARSTO is working to improve collaboration between the air-quality and health-sciences research communities, to advance understanding of the scientific issues involved in effecting a multi-pollutant/multi-media approach to air quality management, and to increase understanding of the linkages between air quality and climate change. NARSTO is represented by private and public organizations in Canada, Mexico, and the United States.
+r3d100011018	NARSTO		>>>!!!<<<  the repository is offline >>>!!!<<< NARSTO is dedicated to improving management of air quality in North America.  Additionally, NARSTO is working to improve collaboration between the air-quality and health-sciences research communities, to advance understanding of the scientific issues involved in effecting a multi-pollutant/multi-media approach to air quality management, and to increase understanding of the linkages between air quality and climate change. NARSTO is represented by private and public organizations in Canada, Mexico, and the United States.
 NARSTO was terminated as of December 31, 2010. While data remain available via the original NARSTO Data Archive, the permanent data archive is maintained by the NASA Langley Research Center Atmospheric Science Data Center
 r3d100011019	PSLC DataShop	https://pslcdatashop.web.cmu.edu/index.jsp	PSLC DataShop houses datasets in the areas of learning science and educational software. The site also provides online tools for analyzing and reporting the data.
 r3d100011020	Barrow Atmospheric Baseline  Observatory	https://esrl.noaa.gov/gmd/obop/brw/	The Barrow, Alaska Observatory (BRW) archives and provides digital access to their findings related to climate change, ozone depletion and baseline air quality.  The BRW is part of the National Oceanic and Atmospheric Administration and Earth System Research Laboratory Global Monitoring Division.
@@ -1574,7 +1574,7 @@ facilitating the use and transfer of resources and tools set up within public la
 promoting French language and the regional languages of France by sharing expertise acquired by public laboratories.
 ORTOLANG is a service for the language, which is complementary to the service offered by Huma-Num (très grande infrastructure de recherche). Ortolang gives access to SLDR for speech, and CNRTL for text resources.
 r3d100011332	CLARIN INT Portal	https://portal.clarin.inl.nl/	The focus of CLARIN INT Portal is on resources that are relevant to the lexicological study of the Dutch language and on resources relevant for research in and development of language and speech technology. For Example: lexicons, lexical databases, text corpora, speech corpora, language and speech technology tools, etc. The resources are: Cornetto-LMF (Lexicon Markup Framework), Corpus of Contemporary Dutch (Corpus Hedendaags Nederlands), Corpus Gysseling, Corpus VU-DNC (VU University Diachronic News text Corpus), Dictionary of the Frisian Language (Woordenboek der Friese Taal), DuELME-LMF (Lexicon Markup Framework), Language Portal (Taalportaal), Namescape, NERD (Named Entity Recognition and Disambiguation) and TICCLops (Text-Induced Corpus Clean-up online processing system).
-r3d100011333	CLARIN Centre Vienna	None	>>>!!!<<<<ARCHE  https://www.re3data.org/repository/r3d100012523 is the successor of a repository project established in 2014 as CLARIN Centre Vienna / Language Resources Portal (CCV/LRP).    The mission of CCV/LRP was to provide depositing services and easy and sustainable access to digital language resources created in Austria. ARCHE replaces CCV/LRP and extends its mission by offering an advanced and reliable data management and depositing service open to a broader range of humanities fields in Austria.  >>>!!!<<<
+r3d100011333	CLARIN Centre Vienna		>>>!!!<<<<ARCHE  https://www.re3data.org/repository/r3d100012523 is the successor of a repository project established in 2014 as CLARIN Centre Vienna / Language Resources Portal (CCV/LRP).    The mission of CCV/LRP was to provide depositing services and easy and sustainable access to digital language resources created in Austria. ARCHE replaces CCV/LRP and extends its mission by offering an advanced and reliable data management and depositing service open to a broader range of humanities fields in Austria.  >>>!!!<<<
 r3d100011334	Meertens Instituut Collecties	https://meertens.knaw.nl/en/collections/	Currently the institute has more than 700 collections consisting of (digital) research data, digitized material, archival collections, printed material, handwritten questionnaires, maps and pictures. The focus is on resources relevant for the study of function, meaning and coherence of cultural expressions and resources relevant for the structural, dialectological and sociolinguistic study of language variation within the Dutch language. An overview is here https://meertens.knaw.nl/en/datasets/
 r3d100011335	DHS Data Access	https://www.dhsdata.nl/site/users/login	The DNB Household Survey (DHS) supplies longitudinal data to the international academic community, with a focus on the psychological and economic aspects of financial behavior. The study comprises information on work, pensions, housing, mortgages, income, assets, loans, health, economic and psychological concepts, and personal characteristics. The DHS data are collected from 2,000 households participating in the CentERpanel. The CentERpanel is an Internet panel that reflects the composition of the Dutch-speaking population in the Netherlands. Both the DHS as well as the CentERpanel, in which the study in conducted, are run by CentERdata
 r3d100011336	eLaborate	https://elaborate.huygens.knaw.nl/	eLaborate is an online work environment in which scholars can upload scans, transcribe and annotate text, and publish the results as on online text edition which is freely available to all users. Short information about and a link to already published editions is presented on the page Editions under Published. Information about editions currently being prepared is posted on the page Ongoing projects.
@@ -1645,7 +1645,7 @@ r3d100011395	EUDAT	https://www.eudat.eu/	The EUDAT project aims to contribute to
 The EUDAT vision is to support a Collaborative Data Infrastructure which will allow researchers to share data within and between communities and enable them to carry out their research effectively. EUDAT aims to provide a solution that will be affordable, trustworthy, robust, persistent and easy to use.
 EUDAT comprises 26 European partners, including data centres, technology providers, research communities and funding agencies from 13 countries.
 B2FIND is the EUDAT metadata service allowing users to discover what kind of data is stored through the B2SAFE and B2SHARE services which collect a large number of datasets from various disciplines. EUDAT will also harvest metadata from communities that have stable metadata providers to create a comprehensive joint catalogue to help researchers find interesting data objects and collections.
-r3d100011396	The Content Name Collection	None	>>>!!!<<< The repository is offline >>>!!!<<< A collection of open content name datasets for Information Centric Networking. The "Content Name Collection" (CNC) lists and hosts open datasets of content names. These datasets are either derived from URL link databases or web traces. The names are typically used for research on Information Centric Networking (ICN), for example to measure cache hit/miss ratios in simulations.
+r3d100011396	The Content Name Collection		>>>!!!<<< The repository is offline >>>!!!<<< A collection of open content name datasets for Information Centric Networking. The "Content Name Collection" (CNC) lists and hosts open datasets of content names. These datasets are either derived from URL link databases or web traces. The names are typically used for research on Information Centric Networking (ICN), for example to measure cache hit/miss ratios in simulations.
 r3d100011397	AEKOS Data Portal	http://www.aekos.org.au/index.html#/home	TERN's AEKOS data portal is the original gateway to Australian ecology data. It is a ‘data and research methods’ data portal for Australia’s land-dwelling plants, animals and their environments. The primary focus of data content is raw co-located ‘species and environment’ ecological survey data that has been collected at the ‘plot’ level to describe biodiversity, its patterns and ecological processes.  It is openly accessible with standard discovery metadata and user-oriented, contextual metadata critical for data reuse. Our services support the ecosystem science community, land managers and governments seeking to publish under COPE publishing ethics and the FAIR data publishing principles. AEKOS is registered with Thomson & Reuters Data Citation Index and is a recommended repository of Nature Publishing’s Scientific Data.  There are currently 97,037 sites covering mostly plant biodiversity and co-located environmental data of Australia.  The AEKOS initiative is supported by TERN (tern.org.au), hosted by The University of Adelaide and funded by the Australian Government’s National Research Infrastructure for Australia.
 r3d100011398	B2SAFE	https://www.eudat.eu/b2safe	B2SAFE is a robust, safe and highly available service which allows community and departmental repositories to implement data management policies on their research data across multiple administrative domains in a trustworthy manner.
 A solution to: provide an abstraction layer which virtualizes large-scale data resources, guard against data loss in long-term archiving and preservation, optimize access for users from different regions, bring data closer to powerful computers for compute-intensive analysis
@@ -1761,7 +1761,7 @@ r3d100011511	DigiMorph	http://www.digimorph.org/index.phtml	The Digital Morpholo
 r3d100011512	EarthStat	http://www.earthstat.org/	EarthStat.org serves geographic data sets with the purpose of solving the grand challenge of feeding a growing global population while reducing agriculture’s impact on the environment.
 r3d100011514	Community Data Portal	http://cdp.ucar.edu/	!!!! <<<<     The Community Data Portal (CDP) has been retired after nearly 15 years of service and is no longer available.  Data can now be found here:     DASH Search: https://data.ucar.edu/ . Please contact us with questions or concerns: datahelp@ucar.edu     >>>>  !!!! The Community Data Portal (CDP) is a collection of earth science datasets from NCAR, UCAR, UOP, and participating organizations.
 r3d100011515	NITRC	https://www.nitrc.org/	Neuroimaging Tools and Resources Collaboratory (NITRC) is currently a free one-stop-shop environment for science researchers that need resources such as neuroimaging analysis software, publicly available data sets, and computing power. Since its debut in 2007, NITRC has helped the neuroscience community to use software and data produced from research that, before NITRC, was routinely lost or disregarded, to make further discoveries. NITRC provides free access to data and enables pay-per-use cloud-based access to unlimited computing power, enabling worldwide scientific collaboration with minimal startup and cost. With NITRC and its components—the Resources Registry (NITRC-R), Image Repository (NITRC-IR), and Computational Environment (NITRC-CE)—a researcher can obtain pilot or proof-of-concept data to validate a hypothesis for a few dollars.
-r3d100011516	PLEXdb	None	>>>!!!<<< 08.08.2019: Plexdb is no longer online, URLold: http://www.plexdb.org/index.php >>>!!!<<<   >>>>!!!! <<<< 13.12.2018: PLEXdb is now a static site after funding stopped from NSF. We have stopped registration of new users; but past users who have data can login when needed and interact with the site. You can download data using the authentication provided at the download page.   >>>>!!!!<<<<
+r3d100011516	PLEXdb		>>>!!!<<< 08.08.2019: Plexdb is no longer online, URLold: http://www.plexdb.org/index.php >>>!!!<<<   >>>>!!!! <<<< 13.12.2018: PLEXdb is now a static site after funding stopped from NSF. We have stopped registration of new users; but past users who have data can login when needed and interact with the site. You can download data using the authentication provided at the download page.   >>>>!!!!<<<<
  PLEXdb is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.
 r3d100011517	United States Department of Agriculture, Economic Research Service, Data Products	https://www.ers.usda.gov/data-products.aspx	The ERS mission is to inform and enhance public and private decision making on economic and policy issues related to agriculture, food, the environment, and rural development.
 r3d100011520	UniMES	https://www.uniprot.org/help/unimes	>>>!!!!<<<  Retirement of UniProt Metagenomic and Environmental Sequences (UniMES):  UniProt has retired UniMES as there is now a resource at the EBI that is dedicated to serving metagenomic researchers. Henceforth, we recommend using the EBI Metagenomics portal instead https://www.ebi.ac.uk/metagenomics/ . In addition to providing a repository of metagenomics sequence data, EBI Metagenomics allows you to view functional and taxonomic analyses and to submit your own samples for analysis. >>> !!!<<<   The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. We provide UniMES clusters in order to obtain complete coverage of sequence space at different resolutions.
@@ -1825,7 +1825,7 @@ r3d100011563	Panel on household finances	https://www.bundesbank.de/en/bundesbank
 r3d100011565	1000 Functional Connectomes Project	http://fcon_1000.projects.nitrc.org/fcpClassic/FcpTable.html	The FCP entailed the aggregation and public release (via www.nitrc.org) of over 1200 resting state fMRI (R-fMRI) datasets collected from 33 sites around the world.
 r3d100011566	WASCAL Data Discovery Portal	https://wascal-dataportal.org/wascal_searchportal2/	Within WASCAL a large number of heterogeneous data are collected. These data are mainly coming from different initiated research activities within WASCAL (Core Research Program, Graduate School Program) from the hydrological-meteorological, remote sensing, biodiversity and socio economic observation networks within WASCAL, and from the activities of the WASCAL Competence Center in Ouagadougou, Burkina-Faso.
 r3d100011567	BIGG Database	http://bigg.ucsd.edu/	BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. BiGG integrates several published genome-scale metabolic networks into one resource with standard nomenclature which allows components to be compared across different organisms. BiGG can be used to browse model content, visualize metabolic pathway maps, and export SBML files of the models for further analysis by external software packages. Users may follow links from BiGG to several external databases to obtain additional information on genes, proteins, reactions, metabolites and citations of interest.
-r3d100011568	Genome-Scale Metabolic Network DataBase	None	>>>!!!<<< 2019-12-23: the repository is offline >>>!!!<<< Introduction of genome-scale metabolic network:
+r3d100011568	Genome-Scale Metabolic Network DataBase		>>>!!!<<< 2019-12-23: the repository is offline >>>!!!<<< Introduction of genome-scale metabolic network:
 The completion of genome sequencing and subsequent functional annotation for a great number of species enables the reconstruction of genome-scale metabolic networks. These networks, together with in silico network analysis methods such as the constraint based methods (CBM) and graph theory methods, can provide us systems level understanding of cellular metabolism. Further more, they can be applied to many predictions of real biological application such as: gene essentiality analysis, drug target discovery and metabolic engineering
 r3d100011570	Kyoto Encyclopedia of Genes and Genomes	http://www.genome.jp/kegg/	KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies
 r3d100011571	Gulf of Mexico Research Initiative Information and Data Cooperative	https://data.gulfresearchinitiative.org/	The Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) is a team of researchers, data specialists and computer system developers who are supporting the development of a data management system to store scientific data generated by Gulf of Mexico researchers. The Master Research Agreement between BP and the Gulf of Mexico Alliance that established the Gulf of Mexico Research Initiative (GoMRI) included provisions that all data collected or generated through the agreement must be made available to the public. The Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) is the vehicle through which GoMRI is fulfilling this requirement. The mission of GRIIDC is to ensure a data and information legacy that promotes continual scientific discovery and public awareness of the Gulf of Mexico Ecosystem.
@@ -1871,7 +1871,7 @@ r3d100011597	LEDAS	https://www.ledas.ac.uk/	The Leicester Database and Archive S
 r3d100011598	Canadian Research Data Centre Network	https://crdcn.ca/publications-data/data/	Research Data Centres offer a secure access to detailed microdata from Statistics Canada's surveys, and to Canadian censuses' data, as well as to an increasing number of administrative data sets. The search engine was designed to help you find out more easily which dataset among all the surveys available in the RDCs best suits your research needs.
 r3d100011601	Structural Biology Data Grid	https://data.sbgrid.org/	Open access to macromolecular X-ray diffraction and MicroED datasets. The repository complements the Worldwide Protein Data Bank. SBDG also hosts reference collection of biomedical datasets contributed by members of SBGrid, Harvard and pilot communities.
 r3d100011602	EELS Data Base	https://eelsdb.eu/	The EELS database is a public interactive consultable web repository of outer-shell and inner-shell excitation spectra from Electron Energy Loss Spectroscopy and X-Ray experiments, which forms a reference catalog of fine structures for materials. Each spectrum is available with a full set of recording parameters providing a complete overview of the working conditions. The database must also be seen as a research tool for EEL spectroscopists, theoreticians, students, or private firms and a central “location” for the growing EELS community.
-r3d100011604	Astronomical Data Archives Center	None	The Astronomical Data Archives Center (ADAC) provides access to astronomical data from all over the world with links to online data catalogs, journal archives, imaging services and data archives. Users can access the VizieR catalogue service as well as the Hubble Ultra Deep Field Data by requesting password access. ADAC also provides access to the SMOKA public science data obtained through the Subaru Telescope in Hawaii as well as Schmidt Telescope at the University of Tokyo & MITSuME and KANATA Telescope at Higashi-Hiroshima Observatory. Users may need to contact the ADAC for password access or create user accounts for the various data services accessible through the ADAC site.
+r3d100011604	Astronomical Data Archives Center		The Astronomical Data Archives Center (ADAC) provides access to astronomical data from all over the world with links to online data catalogs, journal archives, imaging services and data archives. Users can access the VizieR catalogue service as well as the Hubble Ultra Deep Field Data by requesting password access. ADAC also provides access to the SMOKA public science data obtained through the Subaru Telescope in Hawaii as well as Schmidt Telescope at the University of Tokyo & MITSuME and KANATA Telescope at Higashi-Hiroshima Observatory. Users may need to contact the ADAC for password access or create user accounts for the various data services accessible through the ADAC site.
 r3d100011609	PLANTS Database	https://plants.usda.gov/java/	The PLANTS Database provides standardized information about the vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories. It includes names, plant symbols, checklists, distributional data, species abstracts, characteristics, images, crop information, automated tools, onward Web links, and references. This information primarily promotes land conservation in the United States and its territories, but academic, educational, and general use is encouraged. PLANTS reduces government spending by minimizing duplication and making information exchange possible across agencies and disciplines.
 r3d100011611	Stanford Network Analysis Project	http://snap.stanford.edu/index.html	Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library. It is written in C++ and easily scales to massive networks with hundreds of millions of nodes, and billions of edges. It efficiently manipulates large graphs, calculates structural properties, generates regular and random graphs, and supports attributes on nodes and edges. SNAP is also available through the NodeXL which is a graphical front-end that integrates network analysis into Microsoft Office and Excel. The SNAP library is being actively developed since 2004 and is organically growing as a result of our research pursuits in analysis of large social and information networks. Largest network we analyzed so far using the library was the Microsoft Instant Messenger network from 2006 with 240 million nodes and 1.3 billion edges.
 The datasets available on the website were mostly collected (scraped) for the purposes of our research.
@@ -1968,7 +1968,7 @@ r3d100011688	Collaborative Research Centre Transregio 32 Database	https://www.tr
 r3d100011690	UCSD Signaling gateway	http://www.signaling-gateway.org/molecule/	The UCSD Signaling Gateway Molecule Pages provide essential information on over thousands of proteins involved in cellular signaling. Each Molecule Page contains regularly updated information derived from public data sources as well as sequence analysis, references and links to other databases.
 r3d100011691	ACTRIS Data Centre	https://actris.nilu.no/	The ACTRIS DC is designed to assist scientists with discovering and accessing atmospheric data and contains an up-to-date catalogue of available datasets in a number of databases distributed throughout the world. A site like this can never be complete, but we have aimed at including datasets from the most relevant databases to the ACTRIS project, also building on the work and experiences achieved in the EU FP6 research project Global Earth Observation and Monitoring. The focus of the web portal is validated data, but it is also possible to browse the ACTRIS data server for preliminary data (rapid delivery data) through this site.
 The web site allows you to search in a local metadata catalogue that contains information on actual datasets that are archived in external archives. It is set up so that you can search for data by selecting the chemical/physical variable, the data location, the database that holds the data, the type of data, the data acquisition platform, and the data matrix
-r3d100011692	USGODAE Argo GDAC Data Browser	None	!!! <<< the repository is offline, please use: https://www.re3data.org/repository/r3d100011650  >>> !!! The USGODAE Project consists of United States academic, government and military researchers working to improve assimilative ocean modeling as part of the International GODAE Project. GODAE hopes to develop a global system of observations, communications, modeling and assimilation, that will deliver regular, comprehensive information on the state of the oceans, in a way that will promote and engender wide utility and availability of this resource for maximum benefit to the community.
+r3d100011692	USGODAE Argo GDAC Data Browser		!!! <<< the repository is offline, please use: https://www.re3data.org/repository/r3d100011650  >>> !!! The USGODAE Project consists of United States academic, government and military researchers working to improve assimilative ocean modeling as part of the International GODAE Project. GODAE hopes to develop a global system of observations, communications, modeling and assimilation, that will deliver regular, comprehensive information on the state of the oceans, in a way that will promote and engender wide utility and availability of this resource for maximum benefit to the community.
 The USGODAE Argo GDAC is currently operational, serving daily data from the following national DACs: Australia (CSIRO), Canada (MEDS), China (2: CSIO and NMDIS), France (Coriolis), India (INCOIS), Japan (JMA), Korea (2: KMA and Kordi), UK (BODC), and US (AOML).
 r3d100011693	Avian Knowledge Network	https://avianknowledge.net/	The Avian Knowledge Network (AKN) is an international network of governmental and non-governmental institutions and individuals linking avian conservation, monitoring and science through efficient data management and coordinated development of useful solutions using best-science practices based on the data.
 r3d100011694	AVISO+	https://www.aviso.altimetry.fr/en/home.html	AVISO stands for "Archiving, Validation and Interpretation of Satellite Oceanographic data". 
@@ -2034,7 +2034,7 @@ The GENCODE consortium was initially formed as part of the pilot phase of the EN
 r3d100011734	GEOSS Portal	https://www.geoportal.org/?f:dataSource=dab	The GEOSS Portal provides an entry point to access Earth Observation information and services. It will connect to a system of existing portals, addressing the GEO Societal Benefit Areas globally and provide national to regional perspective to achieve synergy and leverage.
 r3d100011738	GIS Data Depot	http://data.geocomm.com/	The repository is no longer available. >>>!!!<<< 2018-09-14: no more access to GIS Data Depot >>>!!!<<<
 r3d100011739	GISTEMP	https://data.giss.nasa.gov/gistemp/	Surface air temperature change is a primary measure of global climate change. The GISTEMP project started in the late 1970s to provide an estimate of the changing global surface air temperature which could be compared with the estimates obtained from climate models simulating the effect of changes in atmospheric carbon dioxide, volcanic aerosols, and solar irradiance. The continuing analysis updates global temperature change from the late 1800s to the present.
-r3d100011740	Global Land Cover Facility	None	>>>!!!<<<  2019-01: Global Land Cover Facility goes offline see https://spatialreserves.wordpress.com/2019/01/07/global-land-cover-facility-goes-offline/  ; no more access to http://www.landcover.org >>>!!!<<<   The Global Land Cover Facility (GLCF) provides earth science data and products to help everyone to better understand global environmental systems. In particular, the GLCF develops and distributes remotely sensed satellite data and products that explain land cover from the local to global scales.
+r3d100011740	Global Land Cover Facility		>>>!!!<<<  2019-01: Global Land Cover Facility goes offline see https://spatialreserves.wordpress.com/2019/01/07/global-land-cover-facility-goes-offline/  ; no more access to http://www.landcover.org >>>!!!<<<   The Global Land Cover Facility (GLCF) provides earth science data and products to help everyone to better understand global environmental systems. In particular, the GLCF develops and distributes remotely sensed satellite data and products that explain land cover from the local to global scales.
 r3d100011741	Global carbon atlas	http://www.globalcarbonatlas.org/?q=en/content/welcome-carbon-atlas	The Global Carbon Atlas is an online platform to explore, visualize and interpret global and regional carbon data arising from both human activities and natural processes. The graphics and data sources are made available in the belief that their wide dissemination will lead to new knowledge and better-informed decisions to limit and cope with human-induced climate change.
 The Global Carbon Atlas is a community effort under the umbrella of the Global Carbon Project based on the contributions of many research institutions and individual scientists around the world who make available observations, models, and interpretation skills.
 r3d100011742	AERONET	https://aeronet.gsfc.nasa.gov/	The AERONET (AErosol RObotic NETwork) program is a federation of ground-based remote sensing aerosol networks established by NASA and PHOTONS  (PHOtométrie pour le Traitement Opérationnel de Normalisation Satellitaire; Univ. of Lille 1, CNES, and CNRS-INSU) and is greatly expanded by networks (e.g., RIMA, AeroSpan, AEROCAN, and CARSNET) and collaborators from national agencies, institutes, universities, individual scientists, and partners. The program provides a long-term, continuous and readily accessible public domain database of aerosol optical, microphysical and radiative properties for aerosol research and characterization, validation of satellite retrievals, and synergism with other databases. The network imposes standardization of instruments, calibration, processing and distribution.
@@ -2399,7 +2399,7 @@ Monitoring location-related data,
 Sample and results-related data.
 Direct access to EMS is restricted to ministry staff, however public access is available upon request through EMS Web Reporting.
 r3d100012030	FactSage	https://www.factsage.com/	FactSage is a fully integrated Canadian thermochemical database system which couples proven software with self-consistent critically assessed thermodynamic data. It currently contains data on over 5000 chemical substances as well as solution databases representing over 1000 non-ideal multicomponent solutions (oxides, salts, sulfides, alloys, aqueous, etc.). FactSage is available for use with Windows.
-r3d100012031	National Contaminants Information System	None	>>>!!!<<< 2021-03-19: The repository is no longer available >>>!!!<<<
+r3d100012031	National Contaminants Information System		>>>!!!<<< 2021-03-19: The repository is no longer available >>>!!!<<<
 The National Contaminants Information System was begun as part of the Department's Green Plan. The NCIS is a computerized warehouse of information on toxic chemicals in fish, other aquatic life and their habitats. It was built to help manage the growing base of data and information.
 r3d100012032	OGSEarth	https://www.geologyontario.mndm.gov.on.ca/ogsearth.html	OGSEarth provides geoscience data, collected by the Mines and Minerals division, which can be viewed using user-friendly geographic information programs such as Google Earth™. OSGEarth provides data on Mining claims, Geology, Index maps, Administrative boundaries and Abandoned mines.
 r3d100012033	Digital Rocks Portal	https://www.digitalrocksportal.org/	Digital Rocks is a data portal for fast storage and retrieval of images of varied porous micro-structures. It has the purpose of enhancing research resources for modeling/prediction of porous material properties in the fields of Petroleum, Civil and Environmental Engineering as well as Geology.
@@ -2457,10 +2457,10 @@ r3d100012078	SOL Genomics Network	https://solgenomics.net/	The Sol Genomics Netw
 SGN is part of the International Solanaceae Initiative (SOL), which has the long-term goal of creating a network of resources and information to address key questions in plant adaptation and diversification
 r3d100012079	Clinical Proteomic Tumor Analysis Consortium Data Portal	https://cptac-data-portal.georgetown.edu/cptac/aboutData/show?scope=about	The CPTAC Data Portal is the centralized repository for the dissemination of proteomic data collected by the Proteome Characterization Centers (PCCs) for the CPTAC program. The portal also hosts analyses of the mass spectrometry data (mapping of spectra to peptide sequences and protein identification) from the PCCs and from a CPTAC-sponsored common data analysis pipeline (CDAP).
 r3d100012080	Materials Data Facility	https://www.materialsdatafacility.org/	The Materials Data Facility (MDF) is set of data services built specifically to support materials science researchers. MDF consists of two synergistic services, data publication and data discovery (in development). The production-ready data publication service offers a scalable repository where materials scientists can publish, preserve, and share research data. The repository provides a focal point for the materials community, enabling publication and discovery of materials data of all sizes.
-r3d100012081	GOBASE	None	!!! >>> the repository is offline >>> !!! GOBASE is a taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts. GOBASE is currently expanding to include information on representative bacteria that are thought to be specifically related to the bacterial ancestors of mitochondria and chloroplasts
+r3d100012081	GOBASE		!!! >>> the repository is offline >>> !!! GOBASE is a taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts. GOBASE is currently expanding to include information on representative bacteria that are thought to be specifically related to the bacterial ancestors of mitochondria and chloroplasts
 r3d100012083	Ocean Tracking Network	http://oceantrackingnetwork.org/	Ocean Tracking Network (OTN) deploys Canadian, state of the art acoustic receivers and oceanographic monitoring equipment in key ocean locations. These are being used to document the movements and survival of marine animals carrying acoustic tags and to document how both are influenced by oceanographic conditions.
 r3d100012084	Phenylalanine Hydroxylase Locus Knowledgebase	https://www.pahdb.mcgill.ca	<<<!!!<<< This repository is no longer available. >>>!!!>>>
-r3d100012085	Protist EST Program Database	None	<<<!!!<<< The PEP database (TBestDB)--Defunct as of 2017-04 >>>!!!>>>
+r3d100012085	Protist EST Program Database		<<<!!!<<< The PEP database (TBestDB)--Defunct as of 2017-04 >>>!!!>>>
 https://megasun.bch.umontreal.ca/pepdb/pepdb.html
 r3d100012086	Pseudomonas Genome DB	http://www.pseudomonas.com/	The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available.
 r3d100012087	UNESCO Institute for Statistics, Data Centre	http://data.uis.unesco.org/	A primary source for cross-nationally comparable statistics on education, science and technology, culture, and communication for more than 200 countries and territories.
@@ -2480,7 +2480,7 @@ Starting from 2003 our development team concentrated on statistical databases to
 r3d100012102	NAKALA	https://www.nakala.fr	NAKALA allows research teams, who so request, to file their digital data (text files, sound, image, video) in a secure warehouse, with DOI, IIIF and which ensures both data availability and quotability time. NAKALA is a full Web application and a repository for humanities and social sciences. It's created and powered in France by Huma-Num, the french infrastructure for digital humanities.
 r3d100012103	NCCOR	https://www.nccor.org/	The National Collaborative on Childhood Obesity Research (NCCOR) brings together four of the nation's leading research funders — the Centers for Disease Control and Prevention (CDC), the National Institutes of Health (NIH), the Robert Wood Johnson Foundation (RWJF), and the U.S. Department of Agriculture (USDA) — to address the problem of childhood obesity in America.
 The Tools of the NCCOR are: Catalogue of Surveillance Systems, Measures Registry and Registry of Studies.
-r3d100012104	Signature Bank	None	!!! >>> The repository is offline <<< !!! One of the world’s largest banks of biological, psychosocial and clinical data on people suffering from mental health problems. The Signature center systematically collects biological, psychosocial and clinical indicators from patients admitted to the psychiatric emergency and at four points throughout their journey in the hospital: upon arrival to the emergency room (state of crisis), at the end of their hospital stay, as well as at the beginning and the end of outpatient treatment. For all hospital clients who agree to participate, blood specimens are collected for the purpose of measuring metabolic, genetic, toxic and infectious biomarkers, while saliva samples are collected to measure sex hormones and hair samples are collected to measure stress hormones. Questionnaire has been selected to cover important dimensional aspects of mental illness such as Behaviour and Cognition (Psychosis, Depression, Anxiety, Impulsiveness, Aggression, Suicide, Addiction, Sleep),Socio-demographic Profile  (Spiritual beliefs, Social functioning, Childhood experiences, Demographic,  Family background) and Medical Data (Medication, Diagnosis, Long-term health, RAMQ data).
+r3d100012104	Signature Bank		!!! >>> The repository is offline <<< !!! One of the world’s largest banks of biological, psychosocial and clinical data on people suffering from mental health problems. The Signature center systematically collects biological, psychosocial and clinical indicators from patients admitted to the psychiatric emergency and at four points throughout their journey in the hospital: upon arrival to the emergency room (state of crisis), at the end of their hospital stay, as well as at the beginning and the end of outpatient treatment. For all hospital clients who agree to participate, blood specimens are collected for the purpose of measuring metabolic, genetic, toxic and infectious biomarkers, while saliva samples are collected to measure sex hormones and hair samples are collected to measure stress hormones. Questionnaire has been selected to cover important dimensional aspects of mental illness such as Behaviour and Cognition (Psychosis, Depression, Anxiety, Impulsiveness, Aggression, Suicide, Addiction, Sleep),Socio-demographic Profile  (Spiritual beliefs, Social functioning, Childhood experiences, Demographic,  Family background) and Medical Data (Medication, Diagnosis, Long-term health, RAMQ data).
 On 2016, May there are more than 1150 participants and 400 for the longitudinal Follow-Up
 r3d100012108	mdw Repository	https://repo.mdw.ac.at	mdw Repository provides researchers with a robust infrastructure for research data management and ensures accessibility of research data during and after completion of research projects, thus, providing a quality boost to contemporary and future research.
 r3d100012109	Amsterdam Cohort Studies on HIV infection and AIDS	https://www.cohortstudies.nl/	>>>!!!<<<   stated 26-02-2020: Amsterdam Cohort Studies on HIV infection and AIDS is no longer available online    >>>!!!<<<    The Amsterdam cohort study (ACS) on human immunodeficiency virus (HIV) infection and AIDS among homosexual men started in 1984 and was expanded to include drug users in 1985. Thus far, about 2100 homosexual men and 1630 (injecting) drug users have been included of whom approximately 700 homosexual men and 550 drug users are still in active follow-up. Every 3-6 months participants complete a standardized questionnaire to obtain medical, epidemiological and social scientific information and undergo a medical examination. In addition, they have blood drawn for virological and immunological tests and storage.
@@ -2640,7 +2640,7 @@ r3d100012226	EM-DAT	https://www.emdat.be/	EM-DAT is a global database on natural
 r3d100012227	ResearchGate Data	https://www.researchgate.net/search/data	ResearchGate is a network where 15+ million scientists and researchers worldwide connect to share their work. Researchers can upload data of any type and receive DOIs, detailed statistics and real-time feedback.
 In Data discovery Section of ResearchGate you can explore the added datasets.
 r3d100012228	The USH1C mutations database	http://www.umd.be/USH1C/	>>> !!! the repository is offline !!!  The current successor is https://www.lovd.nl/USH1C. <<< The database contains all the variants published as pathogenic mutations in the international literature up to November 2007. In addition, unpublished Usher mutations and non-pathogenic variants from the laboratory of Montpellier have been included.
-r3d100012230	GallusReactome	None	>>>!!!<<<  29.01.2020:  Gallus.Reactome is offline  >>>!!!<<<
+r3d100012230	GallusReactome		>>>!!!<<<  29.01.2020:  Gallus.Reactome is offline  >>>!!!<<<
 r3d100012231	Quality of Government Institute's Data	https://www.gu.se/en/quality-government/qog-data	The main objective of our research is to address the theoretical and empirical problem of how political institutions of high quality can be created and maintained. A second objective is to study the effects of Quality of Government on a number of policy areas, such as health, the environment, social policy, and poverty.
 r3d100012232	Surrey Research Insight	https://openresearch.surrey.ac.uk/esploro/	Surrey Research Insight (SRI) is an open access resource that hosts, preserves and disseminates the full text of scholarly papers produced by members of the University of Surrey. Its main purpose is to help Surrey authors make their research more widely known; their ideas and findings readily accessible; and their papers more frequently read and cited.
 Surrey Research Insight (formerly Surrey Scholarship Online) was developed in line with the Open Access Initiative, promoting free access to scholarship for the benefit of authors and scholars. It is one of many open access repositories around the world that operate on agreed standards to ensure wide and timely dissemination of research.
@@ -2749,7 +2749,7 @@ r3d100012320	Sammlung Schweizerischer Rechtsquellen online	https://www.ssrq-sds-
 r3d100012321	Carbohydrate-Active enZYmes Database	http://www.cazy.org/	CAZy is a specialist database dedicated to the display and analysis of genomic, structural and biochemical information on Carbohydrate-Active Enzymes (CAZymes).  CAZy data are accessible either by browsing sequence-based families or by browsing the content of genomes in carbohydrate-active enzymes. New genomes are added regularly shortly after they appear in the daily releases of GenBank. New families are created based on published evidence for the activity of at least one member of the family and all families are regularly updated, both in content and in description.
 r3d100012322	eCommons - Cornell's digital repository	https://ecommons.cornell.edu/	eCommons is a service of the Cornell University Library that provides long-term access to a broad range of Cornell-related digital content of enduring value. eCommons accepts both educational and research-oriented content, including pre- and post-publication papers, datasets, technical reports, theses and dissertations, books, lectures,  presentations and more.
 r3d100012325	PharmGKB	https://www.pharmgkb.org/	PharmGKB is a comprehensive resource that curates knowledge about the impact of genetic variation on drug response for clinicians and researchers. PharmGKB brings together the relevant data in a single place and adds value by combining disparate data on the same relationship, making it easier to search and easier to view the key aspects and by interpreting the data.PharmGKB provide clinical interpretations of this data, curated pathways and VIP summaries which are not found elsewhere.
-r3d100012326	SowiDataNet	None	>>>!!!<<<  08.11.2019:  SowidataNet has moved ; you can now access the SowiDataNet service at  https://data.gesis.org/sharing/#!Home  >>>!!!<<<
+r3d100012326	SowiDataNet		>>>!!!<<<  08.11.2019:  SowidataNet has moved ; you can now access the SowiDataNet service at  https://data.gesis.org/sharing/#!Home  >>>!!!<<<
 r3d100012327	SIP-Archiv	https://www.sip-archiv.de/	SIP-Archiv is an Internet based archive and database for petrophysical data derived by Spectral Induced Polarization (SIP) measurements on sediments and consolidated rocks, building materials, man-made materials and wood. It is open for all SIP related working Groups, and the usage is free of charge for scientific purposes. Nevertheless, a simple registration is needed for both, the users and the user's institution. More details can be found on the website.
 r3d100012328	NMDB	https://www.nmdb.eu	Real-Time Database for high-resolution Neutron Monitor measurements.
 NMDB provides access to Neutron Monitor measurements from stations around the world. The goal of NMDB is to provide easy access to all Neutron Monitor measurements through an easy to use interface. NMDB provides access to real-time as well as historical data.
@@ -3208,7 +3208,7 @@ r3d100012795	Lakehead University Dataverse	https://borealisdata.ca/dataverse/lak
 r3d100012796	Laurentian University Dataverse	https://borealisdata.ca/dataverse/laurentian	Laurentian University Dataverse is an institutional research data repository for research data produced at Laurentian University.
 r3d100012797	McMaster University Dataverse	https://borealisdata.ca/dataverse/mcmaster	The McMaster University Dataverse is a central location for research at McMaster University  and a service of the Ontario Council of University Libraries.
 r3d100012800	Queen's University Dataverse	https://borealisdata.ca/dataverse/queens	Queen's University Dataverse is the institutional open access research data repository for Queen's University, featuring Queen's University Biological Station (QUBS) which includes research related to ecology, evolution, resource management and conservation, GIS, climate data, and environmental science.
-r3d100012801	Ryerson University Dataverse	https://borealisdata.ca/dataverse/ryerson	A data repository for researchers affiliated with Ryerson University. This resource is part of Borealis which is a service provided by the Ontario Council of University Libraries.
+r3d100012801	Toronto Metropolitan University Dataverse	https://borealisdata.ca/dataverse/tmu	A data repository for researchers affiliated with Toronto Metropolitan University. This resource is part of Borealis which is a service provided by the Ontario Council of University Libraries.
 r3d100012802	Trent University Dataverse	https://borealisdata.ca/dataverse/trent	Trent University Dataverse is a research data repository for our faculty, students and staff. Files are held in a secure environment on Canadian servers. The platform makes it possible for researchers to deposit data, create appropriate metadata, and version documents as they work. Researchers can choose to make content available publicly, to specific individuals, or to keep it locked.
 r3d100012803	University of Guelph Research Data Repository  Dataverse	https://borealisdata.ca/dataverse/ugrdr	This repository, in conjunction with the Agri-environmental Research Data Repository, has been created to share and provide long-term access to data from research projects undertaken at the University of Guelph. The repository was created in 2013 by the University of Guelph Library.
 r3d100012805	University of Ottawa Dataverse	https://borealisdata.ca/dataverse/ottawa	Data deposit is supported for University of Ottawa faculty, students, and affiliated researchers. The repository is multidisciplinary and hosted on Canadian servers. It includes features such as permanent links (DOIs) which encourage citation of your dataset and help you set terms for access and reuse of your data. uOttawa Dataverse is currently optimal for small to medium datasets.
@@ -3498,7 +3498,12 @@ r3d100013158	Climate Models	http://repository.edition-topoi.org/collection/ANCM
 r3d100013159	Digitale Sammlungen der Württembergischen Landesbibliothek	http://digital.wlb-stuttgart.de/start/	The Digital Collections present selected pieces of all historical collections of the Württembergische Landesbibliothek. The aim is to offer digital reproductions of objects which are created within the framework of cataloguing and research projects.
 r3d100013160	BioGRID ORCS	https://orcs.thebiogrid.org	BioGRID ORCS is an open repository of CRISPR screens compiled through comprehensive curation efforts. The current index is version 1.0.3 and searches more than 49 publications and 58,161 genes to return more than 895 CRISPR screens from 3 major model organism species and 629 cell lines. All screen data are freely provided through our search index and available via download in a wide variety of standardized formats.
 r3d100013162	Digitale Historische Bibliothek Erfurt/Gotha	https://dhb.thulb.uni-jena.de/templates/master/template_dhb/index.xml	The Gotha Research Library of the University of Erfurt and the Erfurt University Library preserve unique collections of manuscripts, old prints and maps. The Digital Historical Library Erfurt/Gotha provides research-relevant, particularly valuable or frequently used parts of the historical holdings.
-r3d100013164	DASH Repository	https://dashrepo.ucar.edu/	The DASH Repository provides persistent data archiving and distribution for small-scale data collections from UCAR/NCAR researchers and projects. This data repository specifically focuses on providing long-term preservation and stewardship of NCAR's small-scale data collections. Complementing other NCAR-managed data repositories, the DASH Repository helps NCAR researchers to enable long term access, interoperability, and reuse of NCAR datasets.
+r3d100013164	Geoscience Data Exchange	https://gdex.ucar.edu/	The Geoscience Data Exchange (GDEX) mission is to provide public access to data and other digital research assets related to the Earth and its atmosphere, oceans, and space environment. GDEX fulfills federal and scientific publication requirements for open data access by:
+Providing long-term curation and stewardship of research assets;
+Enabling scientific transparency and traceability of research findings in digital formats;
+Complementing existing NCAR community data management and archiving capabilities;
+Facilitating openness and accessibility for the public to leverage the research assets and thereby benefit from NCAR's historical and ongoing scientific research.
+This mission intentionally supports and aligns with those of NCAR and its sponsor, the National Science Foundation (NSF).
 r3d100013165	SUNScholarData	https://scholardata.sun.ac.za/	SUNScholarData is an institutional research data repository which can be used for the registration, archival storage, sharing and dissemination of research data produced or collected in relation to research conducted under the auspices of Stellenbosch University. The repository has a public interface which can be used for finding content. It also has private user accounts which can be used by Stellenbosch University users in order to upload, share or publish their research data. In addition to this Stellenbosch University researchers can also use SUNScholarData in order to collaborate with researchers from other institutions whilst working on their research projects. The repository creates a medium through which Stellenbosch University’s research data can be made findable and accessible. It also facilitates the interoperability and re-usability of the university’s research data.
 r3d100013166	Forschungsdatenzentrum im Kraftfahrt-Bundesamt	https://www.kba.de/DE/Statistik/Forschungsdatenzentrum/forschungsdatenzentrum_node.html	The statistics pages of the Kraftfahrt-Bundesamt (KBA) provide an overview of official facts and figures relating to motor vehicles and their users. The data on this page are continuously updated. Publications generally appear as annual statistics. In addition to this, we provide monthly results relating to new registrations and changes of ownership in Germany, as well as information relating to road haulage with German vehicles
 The currently provisionally accredited research data center of the Kraftfahrt-Bundesamt extends the data portfolio of the official register data and initially provides anonymised microdata for access to the driving fitness register (FAER).
@@ -3552,7 +3557,7 @@ r3d100013212	Repositorio de datos de investigación de la Universidad del Rosari
 
 The Research data repository is the heart of an institutional strategy that seeks to ensure the generation of Findable, Accessible, Interoperable and Reusable (FAIR) data, with the aim of increasing its impact and visibility. This strategy follows the international philosophy of making research data “as open as possible and as closed as necessary”, in order to foster the expansion, valuation, acceleration and reusability of scientific research, but at the same time, safeguard the privacy of the subjects.
 The platform storage, preserves and facilitates the management of research data from all disciplines, generated by the researchers of all the schools and faculties of the University, that work together to ensure research with the highest standards of quality and scientific integrity, encouraging innovation for the benefit of society.
-r3d100013213	KORD Repository	None	>>>!!!<<<  This repository is no longer available, pleas use DataON  http://doi.org/10.17616/R31NJMV3  >>>!!!<<<     Domestic and foreign research data information in one place It is a national research data portal.
+r3d100013213	KORD Repository		>>>!!!<<<  This repository is no longer available, pleas use DataON  http://doi.org/10.17616/R31NJMV3  >>>!!!<<<     Domestic and foreign research data information in one place It is a national research data portal.
 r3d100013215	eData: the STFC Research Data Repository	https://edata.stfc.ac.uk/	eData is an institutional repository where STFC staff can deposit data and software that underpin journal articles and other published research.
 r3d100013216	RDPCIDAT	https://rdpcidat.rub.de/	The research data repository of the RUB Research Department Plasmas with Complex Interactions provides access to the data associated with the scientific publications of the PIs.
 r3d100013217	ESRF Portal	https://data.esrf.fr	Explore, search, and download data and metadata from your experiments and from public Open Data.
@@ -4168,3 +4173,5 @@ Through its Cord Blood for Research Program, Canadian Blood Services’ Cord Blo
 The Cord Blood for Research Program distributes cord blood products that do not meet the criteria for storage in the cord blood bank but still contain enough cells for meaningful research and for which mothers’ research consent has been obtained.
 r3d100013925	TB Portals	https://tbportals.niaid.nih.gov	NIAID’s TB Portals Program is a multi-national collaboration for TB data sharing and analysis to advance TB research. 
  As a global consortium of clinicians, scientists, and IT professionals from 40 sites in 16 countries throughout eastern Europe, Asia, and sub-Saharan Africa, the TB Portals Program is a web-based, open-access repository of multi-domain TB data and tools for its analysis. Researchers can find linked socioeconomic/geographic, clinical, laboratory, radiological, and genomic data from over 7,500 international published TB patient cases with an emphasis on drug-resistant tuberculosis.
+r3d100013927	Canadian Institute for Health Information Repository	https://www.cihi.ca/en/access-data-and-reports	The Canadian Institute for Health Information (CIHI) provides comparable and actionable data and information that are used to accelerate improvements in health care, health system performance and population health across Canada.
+r3d100013931	recherche.data.gov	https://recherche.data.gouv.fr/en	The Research Data Gouv platform is the national federated platform for open and shared research data serving the national scientific community. This platform was an integral part of the Second National Plan for Open Science (PNSO) and offers a multidisciplinary data repository, a registry which reports data hosted in other repositories and a web portal. The multidisciplinary repository is a sovereign publishing solution for sharing and opening up data for communities which are yet to set up their own recognised thematic repository.