-
Notifications
You must be signed in to change notification settings - Fork 4
/
MANIFEST
118 lines (111 loc) · 3.49 KB
/
MANIFEST
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
bin/bioaln
bin/bioseq
bin/biotree
Build.PL
Changes
GNUmakefile
LICENSE
MANIFEST This list of files
README.md
doc/bpwrapper-reference-card.pdf
lib/Bio/BPWrapper/AlnManipulations.pm
lib/Bio/BPWrapper/SeqManipulations.pm
lib/Bio/BPWrapper/TreeManipulations.pm
lib/Bio/BPWrapper.pm
lib/Bio/BPWrapper.pod
t/00test-pod.t
t/10test-bioaln.t
t/10test-bioseq.t
t/10test-biotree.t
t/Helper.pm
t/check-data/bioaln-opt-aln-index.right
t/check-data/bioaln-opt-avg-pid.right
t/check-data/bioaln-opt-codon-view.right
t/check-data/bioaln-opt-con-blocks.right
t/check-data/bioaln-opt-concat.right
t/check-data/bioaln-opt-consensus.right
t/check-data/bioaln-opt-delete.right
t/check-data/bioaln-opt-dna2pep.right
t/check-data/bioaln-opt-input.right
t/check-data/bioaln-opt-length.right
t/check-data/bioaln-opt-list-ids.right
t/check-data/bioaln-opt-match.right
t/check-data/bioaln-opt-no-flat.right
t/check-data/bioaln-opt-no-gaps.right
t/check-data/bioaln-opt-num-seq.right
t/check-data/bioaln-opt-output.right
t/check-data/bioaln-opt-pep2dna.right
t/check-data/bioaln-opt-pick.right
t/check-data/bioaln-opt-ref-seq.right
t/check-data/bioaln-opt-resample.right
t/check-data/bioaln-opt-rm-col.right
t/check-data/bioaln-opt-select-third.right
t/check-data/bioaln-opt-slice.right
t/check-data/bioaln-opt-uniq.right
t/check-data/bioaln-opt-var-sites.right
t/check-data/bioaln-opt-window.right
t/check-data/bioseq-feat2fasta.right
t/check-data/bioseq-genbank2fast.right
t/check-data/bioseq-hydroB.right
t/check-data/bioseq-opt-C.right
t/check-data/bioseq-opt-G.right
t/check-data/bioseq-opt-anonymize.right
t/check-data/bioseq-opt-break.right
t/check-data/bioseq-opt-composition.right
t/check-data/bioseq-opt-delete.right
t/check-data/bioseq-opt-length.right
t/check-data/bioseq-opt-linearize.right
t/check-data/bioseq-opt-no-gaps.right
t/check-data/bioseq-opt-num-seq.right
t/check-data/bioseq-opt-pick.right
t/check-data/bioseq-opt-reloop.right
t/check-data/bioseq-opt-remove-stop.right
t/check-data/bioseq-opt-revcom.right
t/check-data/bioseq-opt-subseq.right
t/check-data/bioseq-opt-translate.right
t/check-data/bioseq-pick-order-2,4.right
t/check-data/bioseq-pick-order-2-4.right
t/check-data/bioseq-restrict.right
t/check-data/biotree-opt-depth.right
t/check-data/biotree-opt-dist-all.right
t/check-data/biotree-opt-dist.right
t/check-data/biotree-opt-label-nodes.right
t/check-data/biotree-opt-lca.right
t/check-data/biotree-opt-length-all.right
t/check-data/biotree-opt-length.right
t/check-data/biotree-opt-ltt.right
t/check-data/biotree-opt-otus-all.right
t/check-data/biotree-opt-otus-desc.right
t/check-data/biotree-opt-otus-num.right
t/check-data/biotree-opt-output.right
t/check-data/biotree-opt-rmbl.right
t/check-data/biotree-opt-subset.right
t/check-data/biotree-opt-walk.right
test-files/genbank
test-files/test-bioaln-cat-1.aln
test-files/test-bioaln-cat-2.aln
test-files/test-bioaln-cat-3.aln
test-files/test-bioaln-pep2dna.aln
test-files/test-bioaln-pep2dna.nuc
test-files/test-bioaln.aln
test-files/test-bioaln.cds
test-files/test-biopop.fas
test-files/test-bioseq-leadgap.fas
test-files/test-bioseq-re.fas
test-files/test-bioseq-single-seq.nuc
test-files/test-bioseq.cds
test-files/test-bioseq.gb
test-files/test-bioseq.nuc
test-files/test-bioseq.pep
test-files/test-biotree-ci-short.aln
test-files/test-biotree-ci.aln
test-files/test-biotree-ci.dnd
test-files/test-biotree-label.txt
test-files/test-biotree-midpoint.dnd
test-files/test-biotree-trait-file.dnd
test-files/test-biotree-trait-file.txt
test-files/test-biotree.dnd
TODO.md
META.yml
META.json
Makefile.PL